genome.fa.s23.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  186  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55451878--55451943	32	2.0	34	91	8	109	36	21	22	19	1.95
55461549--55461593	21	2.1	21	100	0	90	8	26	4	60	1.46
55468785--55468825	18	2.3	18	86	0	55	29	2	46	21	1.64
55468785--55468856	18	3.7	18	71	20	54	27	4	43	25	1.73
55470476--55470595	33	3.5	37	83	10	148	34	27	10	28	1.89
55470780--55470948	41	4.1	41	92	0	275	23	27	20	29	1.98
55470786--55470948	82	2.0	82	98	0	317	23	27	19	29	1.98
55471169--55471214	17	2.8	17	90	6	69	43	19	2	34	1.63
55483381--55483504	56	2.2	56	88	2	178	41	7	13	37	1.72
55483499--55483583	23	3.7	23	93	0	125	32	1	17	48	1.55
55483551--55484089	29	18.6	29	89	4	822	28	0	26	44	1.56
55483499--55483612	23	4.7	23	84	12	120	31	0	20	47	1.56
55483732--55483774	23	2.0	21	95	4	68	30	0	20	48	1.50
55485298--55485332	7	5.0	7	100	0	70	57	14	0	28	1.38
55486516--55486566	22	2.3	21	83	9	66	37	0	31	31	1.58
55486519--55486617	52	1.9	52	93	0	171	39	0	31	29	1.57
55486571--55486617	22	2.1	22	96	0	85	40	0	34	25	1.56
55493462--55493649	61	3.1	60	68	17	172	42	1	6	48	1.39
55493523--55493569	16	3.0	16	78	12	53	46	0	2	51	1.13
55493450--55493686	120	2.0	121	96	0	440	42	1	6	49	1.38
55493625--55493684	16	3.8	16	76	12	54	45	0	1	53	1.10
55493634--55493675	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55493906--55493946	16	2.6	16	100	0	82	19	36	4	39	1.73
55495242--55495300	11	5.4	11	82	8	66	66	6	8	18	1.41
55495242--55495303	22	2.8	22	87	4	81	66	8	8	17	1.42
55495264--55495311	22	2.2	22	92	0	78	68	12	8	10	1.39
55497199--55497631	152	2.8	150	83	5	532	29	8	7	53	1.60
55497635--55498289	153	4.2	153	87	4	852	52	7	10	30	1.63
55504966--55505006	16	2.5	16	88	4	55	46	2	0	51	1.14
55506323--55506392	28	2.5	28	97	2	133	28	8	0	62	1.24
55518268--55518307	20	2.0	20	85	0	53	60	12	0	27	1.33
55518424--55518472	24	2.1	23	82	14	57	51	2	8	38	1.43
55518506--55518561	3	18.7	3	81	7	69	62	1	5	30	1.28
55522054--55522096	17	2.6	17	81	3	52	69	2	18	9	1.26
55523214--55528791	43	131.0	42	76	10	4180	25	0	26	47	1.57
55523676--55523770	50	1.9	49	91	2	154	25	0	27	47	1.52
55523705--55523760	29	1.9	29	85	7	78	25	0	26	48	1.52
55524098--55524170	7	10.4	7	71	21	55	24	0	28	46	1.53
55524120--55524191	35	2.1	35	84	5	92	22	0	31	45	1.52
55524140--55524184	15	2.9	16	81	12	51	22	0	28	48	1.50
55526352--55526381	14	2.1	14	93	0	51	16	0	33	50	1.46
55526739--55526857	58	2.1	57	81	9	134	24	0	27	47	1.58
55526784--55526815	15	2.2	15	94	5	57	28	0	15	56	1.40
55527063--55527146	27	3.1	26	71	21	75	26	0	25	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55527702--55527740	7	5.6	7	87	0	51	15	0	35	48	1.45
55523214--55528791	21	263.1	21	77	10	4528	25	0	26	47	1.57
55529356--55529398	18	2.4	18	84	0	59	46	9	27	16	1.77
55530046--55530085	7	5.7	7	93	0	71	57	12	0	30	1.36
55530254--55530291	20	1.9	20	84	10	51	57	7	0	34	1.28
55531233--55531296	22	2.9	23	83	2	69	46	3	29	20	1.66
55531247--55531296	11	4.5	11	87	2	64	46	4	34	16	1.65
55532644--55532706	27	2.3	27	97	0	117	20	30	31	17	1.96
55534576--55534624	19	2.4	21	83	10	57	20	2	4	73	1.10
55537781--55537868	43	2.0	43	97	0	167	26	15	19	38	1.92
55538389--55538436	17	2.7	18	78	18	55	60	6	4	29	1.40
55545249--55545297	24	2.1	23	88	3	71	61	0	2	36	1.08
55547251--55547278	12	2.3	12	100	0	56	42	7	0	50	1.30
55550977--55551018	21	2.0	22	90	4	68	69	7	21	2	1.25
55558156--55558204	22	2.3	22	96	3	91	38	28	0	32	1.57
55561852--55561901	26	2.0	26	84	7	68	44	2	2	52	1.24
55563670--55563714	18	2.5	18	88	0	72	15	48	6	28	1.70
55564552--55564580	3	9.7	3	100	0	58	68	31	0	0	0.89
55564644--55564681	9	3.7	10	86	13	51	63	10	0	26	1.27
55564644--55564682	19	2.0	21	90	10	64	64	10	0	25	1.25
55564707--55564745	11	3.6	11	93	6	71	0	25	0	74	0.82
55564933--55564999	27	2.6	27	92	4	111	47	1	8	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55565306--55565349	16	2.8	16	89	0	70	36	0	29	34	1.58
55566562--55566614	20	2.7	20	96	0	97	45	0	32	22	1.53
55566720--55566779	30	2.0	31	86	3	86	40	0	40	20	1.52
55566993--55567038	9	5.1	9	89	10	76	32	10	10	45	1.74
55567092--55567122	9	3.4	9	90	0	53	38	22	12	25	1.90
55569136--55569229	48	2.0	48	91	4	154	30	17	23	28	1.97
55575237--55575308	36	2.0	36	88	0	108	34	12	30	22	1.91
55579502--55579543	6	7.0	6	100	0	84	33	0	66	0	0.92
55582861--55582928	33	2.1	33	100	0	136	36	35	5	22	1.78
55582942--55582966	13	1.9	13	100	0	50	40	16	16	28	1.89
55596103--55596141	19	2.0	20	90	5	62	58	15	12	12	1.62
55597677--55597712	6	5.7	6	87	12	54	2	16	0	80	0.83
55597677--55597712	13	2.8	13	95	0	63	2	16	0	80	0.83
55598004--55598067	31	2.1	31	82	5	76	56	6	6	31	1.49
55600975--55601255	125	2.3	126	88	5	403	30	15	21	32	1.95
55601776--55601838	22	2.8	23	77	15	69	44	0	20	34	1.52
55608406--55608494	41	2.2	41	89	0	133	61	12	0	25	1.31
55610873--55610940	32	2.1	32	91	5	111	52	17	0	29	1.45
55616149--55616201	3	17.7	3	80	7	63	30	5	1	62	1.29
55616235--55616283	24	2.1	23	82	14	57	38	8	2	51	1.43
55627653--55627680	1	28.0	1	100	0	56	100	0	0	0	0.00
55628889--55629217	43	7.6	44	71	14	179	32	21	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55630865--55630917	3	17.7	3	80	7	63	30	5	1	62	1.29
55630951--55630999	24	2.1	23	82	14	57	38	8	2	51	1.43
55642937--55643077	27	5.2	27	86	3	194	24	27	9	37	1.87
55642923--55643078	81	1.9	82	86	1	224	25	28	10	36	1.88
55644679--55644869	57	3.6	54	82	9	225	21	18	14	45	1.85
55644677--55644869	54	3.6	54	85	5	234	22	18	13	44	1.85
55654628--55654673	23	2.0	23	91	4	76	36	0	4	58	1.18
55655435--55655501	28	2.4	28	92	2	109	67	0	0	32	0.91
55655438--55655480	20	2.1	21	86	4	61	67	0	0	32	0.91
55655433--55655509	28	2.8	26	79	12	84	67	0	0	32	0.91
55655504--55655588	11	8.4	10	68	17	50	58	2	9	29	1.42
55655502--55655590	20	4.4	20	72	18	69	57	2	8	31	1.42
55657353--55657423	28	2.6	27	88	4	99	64	0	0	35	0.94
55657464--55657509	20	2.2	21	84	3	58	67	2	6	23	1.25
55658951--55659028	29	2.8	28	88	5	115	34	0	42	23	1.54
55659358--55659441	19	4.3	18	76	11	69	34	0	2	63	1.08
55660018--55660072	27	2.1	26	96	3	101	32	20	9	38	1.84
55666170--55666257	39	2.3	40	92	4	137	46	13	3	36	1.60
55666181--55666258	39	2.0	39	100	0	156	48	10	2	38	1.51
55666775--55666855	21	3.9	21	76	0	72	44	16	20	18	1.87
55666765--55666914	42	3.6	41	79	1	138	46	16	20	17	1.84
55666796--55666914	21	5.7	21	74	7	98	44	14	22	18	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55669018--55669080	30	2.1	30	93	0	108	25	3	14	57	1.52
55669484--55669639	78	2.0	77	93	1	267	41	13	20	25	1.89
55671048--55671113	33	2.0	33	100	0	132	42	21	15	21	1.89
55672898--55673118	51	4.3	52	80	6	229	24	15	28	31	1.95
55672932--55673116	101	1.8	102	91	3	311	24	16	26	32	1.96
55673038--55673118	26	3.2	25	67	28	62	23	12	27	37	1.90
55673124--55673334	43	5.0	43	82	8	263	22	18	24	34	1.96
55673124--55673334	85	2.5	84	94	2	361	22	18	24	34	1.96
55676424--55676606	38	4.7	37	70	16	111	43	1	4	49	1.33
55676355--55676642	119	2.4	119	98	0	549	43	1	3	51	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218