genome.fa.s23.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  30  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9561973--9562030	30	1.9	30	96	0	107	58	15	3	22	1.52
9562075--9562113	11	3.5	11	78	0	51	61	7	10	20	1.52
9562067--9562109	22	2.0	22	85	0	59	60	9	9	20	1.55
9564676--9564752	36	2.1	36	83	4	93	16	12	28	41	1.86
9567352--9567388	16	2.3	16	100	0	74	40	5	18	35	1.74
9568084--9568140	28	2.0	28	93	0	96	24	12	17	45	1.83
9570735--9570803	35	1.9	36	94	2	122	24	4	18	52	1.64
9572095--9572181	33	2.7	32	79	13	106	44	17	10	27	1.81
9572161--9572225	34	1.9	33	87	9	96	47	10	7	33	1.67
9575472--9576851	458	3.0	458	100	0	2760	35	17	7	39	1.78
9579121--9579239	43	2.8	42	73	2	112	31	25	16	26	1.97
9585103--9585146	12	3.7	12	75	0	52	25	0	43	31	1.55
9595590--9595614	2	12.5	2	100	0	50	0	48	0	52	1.00
9597960--9598210	132	1.9	132	90	1	396	33	21	21	23	1.97
9625281--9625760	115	4.4	111	84	10	619	37	12	15	33	1.86
9625227--9625769	115	5.0	110	81	10	512	37	13	16	33	1.87
9625938--9625971	15	2.4	14	95	5	59	0	14	0	85	0.60
9627379--9627422	21	2.1	21	100	0	88	50	0	22	27	1.50
9628492--9628556	28	2.5	27	87	9	91	23	18	15	43	1.88
9628548--9628635	44	2.0	43	82	6	106	26	1	54	18	1.50
9632506--9632538	17	1.9	18	88	11	52	42	12	0	45	1.41
9632665--9632697	4	8.5	4	93	6	59	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9635228--9635323	28	3.4	28	84	8	122	30	23	22	22	1.99
9635242--9635323	30	2.8	28	87	5	101	31	25	19	23	1.98
9635657--9635931	27	10.2	26	83	6	284	20	21	16	41	1.90
9635643--9635931	54	5.3	52	85	6	330	20	21	16	41	1.90
9635674--9635931	81	3.2	80	89	6	378	19	22	15	42	1.89
9636127--9636153	14	1.9	14	100	0	54	18	29	0	51	1.46
9638705--9638744	20	2.0	20	90	0	62	42	0	27	30	1.56
9647606--9647633	2	14.0	2	100	0	56	0	50	0	50	1.00
9648844--9648873	6	5.0	6	100	0	60	16	33	50	0	1.46
9652005--9652033	3	9.7	3	100	0	58	68	0	0	31	0.89
9656148--9656179	12	2.8	11	90	9	55	0	21	0	78	0.76
9667486--9667528	21	2.1	21	82	4	52	34	4	20	39	1.74
9669984--9670071	21	4.0	23	81	8	87	35	25	21	18	1.95
9671236--9671288	3	17.7	3	96	0	97	66	1	0	32	1.03
9671416--9671461	14	3.3	14	93	0	83	56	2	0	41	1.11
9673520--9673556	15	2.5	15	90	0	56	51	2	0	45	1.15
9684710--9684944	43	5.5	43	87	1	328	31	27	17	24	1.97
9684710--9684944	85	2.7	85	88	1	317	31	27	17	24	1.97
9688873--9688917	22	2.0	22	86	0	63	35	37	0	26	1.57
9688898--9688931	14	2.4	14	90	9	52	32	44	0	23	1.54
9689014--9689065	21	2.7	18	85	8	59	53	19	13	13	1.72
9689220--9689271	7	7.3	7	81	12	61	46	36	0	17	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9689221--9689281	15	4.2	15	77	10	56	49	32	0	18	1.48
9697184--9697446	9	30.3	9	73	14	223	31	1	22	45	1.61
9697208--9697274	26	2.6	26	97	0	125	32	2	20	43	1.67
9697193--9697265	19	4.6	17	71	28	72	31	4	21	42	1.72
9697185--9697445	34	7.5	35	71	15	152	31	1	22	45	1.62
9697184--9697446	25	10.1	25	80	12	191	31	1	22	45	1.61
9697610--9697643	12	2.8	13	86	13	54	50	0	0	50	1.00
9698461--9698540	31	2.6	31	93	0	133	43	22	15	18	1.87
9700453--9700538	39	2.2	39	87	8	122	38	39	2	19	1.65
9701216--9701246	9	3.4	9	90	0	53	25	12	22	38	1.90
9701300--9701336	9	4.1	9	92	0	65	45	13	10	29	1.77
9701550--9701609	30	2.0	31	86	3	86	20	40	0	40	1.52
9701712--9701766	20	2.8	20	91	0	92	23	25	0	50	1.49
9702455--9702827	113	3.3	112	81	8	434	26	25	21	26	1.99
9702456--9702868	227	1.8	227	82	5	539	26	24	21	26	1.99
9704343--9704422	37	2.2	37	97	2	153	30	16	10	43	1.80
9715028--9715069	15	3.2	13	78	15	50	57	0	2	40	1.12
9721031--9721073	19	2.3	18	84	4	59	2	65	0	32	1.06
9722820--9722874	29	1.9	28	85	10	76	34	1	0	63	1.05
9722817--9722885	32	2.1	33	84	7	88	34	2	1	60	1.20
9722814--9722887	38	1.9	38	81	10	89	35	4	1	59	1.25
9724484--9724518	16	2.2	16	89	0	52	22	14	20	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9727130--9727163	17	2.0	17	88	0	50	85	8	5	0	0.75
9729050--9729722	50	13.5	50	67	2	348	29	23	25	20	1.99
9729042--9729729	100	6.9	99	91	1	1038	29	23	25	21	1.99
9729021--9729742	299	2.4	298	92	1	1187	28	23	25	22	1.99
9729016--9729785	399	1.9	399	89	2	1181	28	23	25	22	1.99
9731145--9731187	20	2.2	20	87	8	61	39	2	2	55	1.25
9731155--9731216	7	8.6	7	75	18	56	38	1	0	59	1.07
9731158--9731219	24	2.9	22	75	25	62	38	1	0	59	1.07
9731161--9731248	33	3.0	30	74	18	78	37	2	2	57	1.23
9731168--9731258	30	2.8	33	81	6	98	35	2	3	59	1.26
9731154--9731200	20	2.2	20	88	7	67	40	2	0	57	1.11
9731154--9731207	24	2.3	23	84	12	74	38	1	0	59	1.08
9732992--9733066	22	3.4	22	79	0	78	58	16	12	13	1.63
9735277--9735321	21	2.2	21	88	4	65	57	4	2	35	1.31
9740835--9740872	15	2.6	15	83	4	51	26	10	7	55	1.61
9744360--9744398	20	2.0	20	89	0	60	20	23	15	41	1.90
9744485--9744532	20	2.5	20	80	10	55	10	25	22	41	1.85
9746308--9746336	13	2.1	14	93	6	51	58	6	0	34	1.25
9747433--9747470	17	2.3	17	90	4	60	57	2	0	39	1.12
9748840--9749117	94	3.0	93	86	3	378	41	23	13	21	1.89
9750399--9750536	33	4.2	33	81	8	158	38	34	10	16	1.83
9756219--9756341	42	3.0	43	79	9	139	43	17	20	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9759879--9759945	23	3.1	23	62	24	54	43	13	11	31	1.80
9759873--9759959	42	2.1	42	95	0	156	45	14	9	29	1.76
9764869--9764913	22	2.0	23	82	8	56	28	2	11	57	1.45
9776348--9776407	25	2.3	26	88	5	95	23	25	25	26	2.00
9776577--9776645	35	2.0	35	94	0	120	17	50	11	20	1.76
9778004--9778062	3	20.3	3	81	6	50	35	8	0	55	1.30
9778002--9778051	25	2.0	26	92	4	84	40	10	0	50	1.36
9782630--9782660	15	2.1	14	94	5	53	77	0	22	0	0.77
9784400--9784507	6	18.0	6	98	0	207	15	0	33	50	1.44
9786214--9786239	5	5.2	5	100	0	52	23	19	19	38	1.93
9789966--9790031	3	23.0	3	77	9	57	36	6	0	57	1.23
9789974--9790023	25	2.0	26	92	4	84	40	8	0	52	1.31
9802099--9802596	44	11.4	43	76	6	387	27	16	25	30	1.96
9802096--9802597	132	3.8	131	92	2	837	27	16	25	30	1.97
9802096--9802596	263	1.9	263	97	0	948	27	16	25	30	1.97
9802574--9802619	23	2.0	23	82	0	56	19	21	17	41	1.90
9802596--9802839	44	5.5	44	77	4	224	25	17	26	30	1.97
9802354--9802840	242	2.0	242	96	1	895	26	17	25	30	1.97
9802596--9802846	132	1.9	132	97	0	475	25	17	26	30	1.97
9804022--9804090	3	24.0	3	78	8	54	36	7	0	56	1.27
9804030--9804079	25	2.0	26	92	4	84	40	10	0	50	1.36
9808659--9808689	15	2.1	14	94	5	53	77	0	22	0	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9810429--9810548	6	20.0	6	98	0	231	15	0	33	50	1.45
9812253--9812278	5	5.2	5	100	0	52	23	19	19	38	1.93
9821557--9821828	136	2.0	136	94	0	481	35	16	21	26	1.94
9822692--9822742	23	2.2	23	79	6	59	45	31	1	21	1.63
9823559--9823703	46	3.2	45	81	6	159	20	20	13	45	1.85
9823683--9823839	45	3.5	46	83	6	189	24	19	17	38	1.93
9823827--9823927	45	2.2	45	96	0	184	16	20	20	41	1.90
9823677--9823887	90	2.3	89	80	6	228	22	19	18	39	1.92
9824820--9824885	23	2.8	24	80	13	75	36	0	1	62	1.05
9824820--9824872	24	2.2	23	86	6	70	32	0	1	66	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218