genome.fa.s23.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  169  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51251738--51252113	123	3.0	123	88	1	545	33	21	14	30	1.93
51252717--51252756	21	1.9	21	84	0	53	50	0	0	50	1.00
51255119--51255322	71	2.8	72	89	0	320	28	15	19	35	1.93
51262631--51262712	27	3.0	27	96	0	155	25	21	23	29	1.99
51266603--51266899	129	2.3	129	84	1	362	33	20	19	25	1.97
51266693--51266900	44	4.8	42	73	9	143	34	20	20	25	1.97
51266832--51266929	44	2.2	44	80	3	108	33	19	20	26	1.96
51269367--51269500	71	1.9	70	92	1	223	28	17	20	33	1.95
51271257--51271306	18	2.8	17	76	11	55	60	2	4	34	1.27
51279695--51279742	21	2.2	22	85	3	62	50	12	6	31	1.65
51280837--51280874	14	2.6	14	84	15	51	39	0	2	57	1.12
51283527--51284012	43	11.3	43	80	4	309	27	24	23	24	2.00
51283724--51284012	129	2.2	129	83	3	348	27	24	25	23	2.00
51284335--51284388	21	2.6	21	81	0	63	9	38	12	38	1.76
51284441--51284486	21	2.2	21	84	0	56	4	39	17	39	1.69
51284364--51284536	87	2.0	87	89	4	269	12	30	17	39	1.87
51287041--51287156	35	3.5	35	70	21	124	30	1	19	48	1.59
51286993--51287208	9	24.7	9	69	17	143	32	2	19	45	1.63
51287009--51287183	62	2.9	61	88	3	262	31	2	20	46	1.63
51287300--51287340	13	2.8	15	85	14	59	34	0	19	46	1.50
51287299--51287377	16	5.0	16	75	13	74	34	1	17	46	1.56
51287428--51287478	21	2.4	22	80	9	70	50	1	0	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51289219--51289245	11	2.5	11	100	0	54	55	0	18	25	1.43
51292122--51292442	41	7.8	41	72	8	222	36	21	23	18	1.95
51295711--51295763	17	3.2	16	81	7	61	33	0	7	58	1.26
51306843--51306907	29	2.2	29	83	5	76	52	6	7	33	1.55
51329836--51329917	41	2.0	41	100	0	164	26	31	7	34	1.84
51336845--51336894	24	2.1	23	85	3	64	48	4	0	48	1.20
51353728--51353796	35	2.0	35	97	0	129	50	17	11	20	1.76
51356732--51356875	41	3.5	41	91	0	207	31	20	20	27	1.97
51357013--51357187	64	2.7	67	79	8	182	42	14	8	34	1.77
51358558--51358657	46	2.1	47	92	1	166	28	1	30	41	1.63
51361631--51361676	23	2.0	23	86	0	65	8	41	17	32	1.80
51364114--51364149	19	1.9	19	88	5	56	50	8	0	41	1.33
51366306--51366385	39	2.1	39	95	0	142	20	20	21	38	1.93
51368260--51368364	51	2.1	51	89	5	160	32	14	11	41	1.81
51370009--51370053	21	2.0	22	83	8	56	15	11	8	64	1.49
51372392--51372432	21	2.0	21	85	4	57	17	0	41	41	1.49
51372400--51372456	15	3.9	15	81	2	71	21	0	43	35	1.52
51372421--51372471	23	2.2	24	89	3	77	17	3	45	33	1.67
51372004--51372871	284	3.0	287	82	8	940	28	2	26	42	1.67
51372658--51372704	14	3.3	15	88	8	71	25	0	34	40	1.56
51372651--51372768	21	5.5	21	70	11	71	27	0	33	38	1.63
51372701--51372774	15	5.1	14	76	16	64	27	1	33	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51382876--51383228	85	4.1	86	82	4	349	28	16	27	27	1.97
51382876--51383213	43	7.9	43	82	3	351	28	16	28	26	1.97
51382876--51383213	128	2.6	129	80	3	362	28	16	28	26	1.97
51394628--51394811	45	4.1	43	84	5	206	34	15	20	29	1.94
51394628--51395024	44	8.7	45	72	13	256	31	17	20	30	1.95
51394628--51394812	89	2.1	89	86	2	255	34	16	20	29	1.94
51394646--51394831	45	4.2	44	80	9	191	34	16	20	27	1.95
51408526--51408581	24	2.3	24	87	0	85	39	12	17	30	1.87
51408891--51409174	88	3.2	88	88	0	442	27	19	24	28	1.98
51409117--51409749	132	4.8	132	89	0	930	29	18	24	26	1.98
51410026--51410186	88	1.8	88	82	2	207	29	19	21	29	1.98
51413781--51413824	22	2.0	22	86	0	61	38	2	22	36	1.67
51414407--51414463	30	1.9	30	88	0	87	15	15	24	43	1.86
51417501--51417542	21	2.0	21	85	0	57	59	11	0	28	1.33
51417547--51417591	21	2.3	19	84	7	54	46	8	0	44	1.34
51422995--51423188	94	2.1	94	99	0	381	42	18	7	31	1.77
51424949--51424994	16	3.1	15	87	9	67	56	0	0	43	0.99
51428160--51428360	41	4.9	41	84	3	235	29	19	27	23	1.98
51428547--51428635	37	2.5	36	91	7	139	28	10	28	33	1.89
51435496--51435696	41	4.9	41	83	3	217	28	18	27	24	1.98
51435883--51435971	37	2.5	36	91	7	139	28	10	28	33	1.89
51438025--51438058	6	5.7	6	96	0	59	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51438740--51438779	20	2.0	20	100	0	80	25	20	15	40	1.90
51449994--51450036	20	2.1	20	83	12	52	67	0	4	27	1.10
51459359--51459409	19	2.7	19	88	8	70	43	5	19	31	1.75
51461188--51461234	9	5.8	8	82	9	51	59	2	4	34	1.29
51472582--51472634	3	17.7	3	100	0	106	33	0	33	32	1.58
51473099--51473141	11	3.6	13	76	23	58	30	6	18	44	1.76
51473104--51473146	22	2.0	22	95	0	77	34	4	16	44	1.68
51476221--51476245	12	2.1	12	100	0	50	36	8	24	32	1.84
51486082--51486125	2	22.0	2	80	0	52	40	0	59	0	0.98
51490145--51490374	112	2.1	112	98	0	442	40	13	22	23	1.89
51496860--51497168	152	2.0	153	96	2	575	36	12	19	31	1.89
51497363--51497413	26	2.0	26	84	7	68	27	11	11	49	1.74
51502451--51502640	102	1.9	102	84	0	254	40	15	12	32	1.84
51509186--51509223	16	2.4	16	91	8	60	42	0	28	28	1.56
51509205--51509297	44	2.1	46	89	4	145	29	4	30	36	1.77
51509205--51509310	39	2.5	44	82	11	132	30	3	31	34	1.75
51509455--51509491	16	2.2	17	86	13	51	59	0	0	40	0.97
51509448--51509487	14	2.9	15	82	14	50	52	0	0	47	1.00
51509483--51509512	15	1.9	16	93	6	53	50	6	0	43	1.28
51509437--51509794	120	3.0	120	96	0	662	49	4	2	43	1.37
51509533--51509718	59	3.1	59	69	17	175	50	3	3	43	1.34
51509577--51509611	18	2.0	17	88	5	52	54	0	2	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51509603--51509632	15	1.9	16	93	6	53	50	6	0	43	1.28
51509678--51509718	15	2.7	16	82	17	52	51	0	0	48	1.00
51509436--51509748	57	5.3	55	68	20	193	49	3	2	43	1.34
51509485--51509792	61	5.1	61	69	19	268	49	4	3	42	1.40
51510904--51510928	13	1.9	13	100	0	50	8	28	16	48	1.74
51514198--51514267	16	4.4	16	87	0	104	42	5	30	21	1.76
51514198--51514265	32	2.1	32	94	0	118	42	5	29	22	1.77
51514245--51514333	45	2.0	44	89	6	135	32	5	25	35	1.80
51514425--51514513	35	2.5	35	80	10	92	51	2	1	44	1.21
51518263--51518289	14	1.9	14	100	0	54	62	0	29	7	1.22
51526318--51526444	67	1.9	67	95	0	227	36	19	10	33	1.86
51530601--51531068	120	3.9	120	98	0	893	43	2	6	47	1.41
51531216--51531306	45	2.0	45	85	2	121	37	28	6	27	1.82
51531287--51531355	16	4.2	16	92	3	120	36	37	1	24	1.65
51531287--51531355	33	2.1	32	94	2	120	36	37	1	24	1.65
51534022--51534078	19	2.7	22	84	10	66	36	8	15	38	1.79
51535910--51535949	14	2.9	14	84	0	53	32	7	17	42	1.77
51535933--51535972	20	2.0	20	90	0	62	27	10	12	50	1.72
51535918--51535984	34	1.9	35	90	3	109	31	8	13	46	1.74
51535912--51535988	14	5.0	15	71	20	52	32	9	15	42	1.78
51536138--51536192	25	2.4	25	80	20	66	60	5	0	34	1.20
51538294--51538336	6	7.2	6	86	0	50	39	0	58	2	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51538292--51538333	12	3.6	12	90	3	68	42	0	54	2	1.13
51538286--51538333	23	2.1	23	84	7	62	43	0	52	4	1.20
51538292--51538333	17	2.4	17	84	4	57	42	0	54	2	1.13
51552658--51552708	4	12.8	4	95	0	93	25	0	23	50	1.49
51554745--51554779	13	2.7	13	90	0	52	37	5	22	34	1.78
51562625--51562747	60	2.1	60	85	1	167	26	19	13	41	1.87
51563237--51563267	12	2.5	12	94	5	53	54	0	0	45	0.99
51572259--51572320	29	2.2	28	83	13	76	41	4	9	43	1.59
51573921--51573958	18	2.1	18	95	0	67	21	15	34	28	1.94
51584726--51584855	64	2.0	64	84	0	170	23	20	22	34	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218