genome.fa.s23.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  133  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40632052--40632097	19	2.4	18	82	10	56	67	0	4	28	1.10
40632241--40632296	28	2.0	28	82	0	67	64	7	5	23	1.40
40632253--40632307	28	2.0	28	92	0	92	54	7	5	32	1.51
40634113--40634328	42	5.1	42	88	3	310	35	21	22	20	1.96
40634302--40634419	42	2.8	42	92	0	191	21	21	23	33	1.97
40638433--40638807	185	2.0	185	96	0	687	47	5	29	17	1.71
40639201--40639325	40	3.2	38	75	5	106	33	20	16	28	1.95
40639614--40639659	14	3.3	14	84	6	58	19	0	32	47	1.50
40639626--40639665	7	5.7	7	84	0	53	20	0	32	47	1.50
40639619--40639658	21	1.9	21	94	0	71	17	0	32	50	1.47
40641820--40641880	11	5.5	11	74	18	63	39	1	11	47	1.50
40644000--40644063	33	1.9	33	100	0	128	34	15	9	40	1.80
40644496--40644710	41	5.2	41	73	13	156	20	25	26	27	1.99
40644496--40644692	82	2.4	80	78	13	195	20	25	25	27	1.99
40645766--40645936	73	2.3	74	91	1	272	26	18	19	35	1.95
40645786--40645936	74	2.1	73	94	1	266	25	18	19	36	1.94
40648800--40648835	15	2.5	15	90	4	56	11	16	8	63	1.49
40649491--40649867	16	24.1	15	69	24	189	45	12	2	38	1.57
40649491--40649745	31	8.2	30	66	22	127	46	12	1	38	1.54
40649449--40649725	93	3.0	93	93	2	495	46	12	1	39	1.53
40649575--40649630	9	6.8	9	71	19	50	46	16	0	37	1.47
40649584--40649842	124	2.1	124	94	1	448	45	13	2	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40649709--40649867	50	3.3	49	73	18	172	45	13	3	37	1.61
40649708--40649925	93	2.4	93	92	1	368	44	13	3	38	1.60
40649615--40649811	62	3.2	62	72	16	217	45	13	3	38	1.59
40649491--40649942	217	2.1	215	92	3	746	45	13	2	38	1.57
40649506--40649989	75	6.3	77	70	18	273	45	13	2	38	1.57
40649967--40650008	16	2.7	15	85	7	66	45	14	0	40	1.45
40655680--40655738	21	2.8	21	86	0	82	35	16	42	5	1.71
40655533--40655698	87	1.9	87	88	4	255	40	16	28	13	1.87
40656048--40656387	43	7.9	43	91	0	527	22	20	26	30	1.98
40656040--40656458	129	3.2	129	84	2	340	23	20	26	29	1.99
40656529--40656572	21	2.0	21	82	8	52	38	22	18	20	1.93
40657090--40657134	21	2.1	21	84	8	56	48	15	0	35	1.45
40658048--40658091	21	2.1	21	100	0	88	38	9	13	38	1.77
40658047--40658102	21	2.8	19	87	10	85	37	8	16	37	1.80
40658060--40658125	23	3.0	23	82	12	77	37	6	16	39	1.74
40658091--40658135	23	2.0	23	86	4	65	33	4	15	46	1.66
40658325--40658369	23	2.0	23	81	0	54	22	0	15	62	1.33
40658519--40658567	23	2.2	22	82	10	55	36	2	0	61	1.08
40658814--40658866	23	2.2	23	83	6	61	32	11	1	54	1.47
40659048--40659107	3	20.0	3	92	0	102	31	1	0	66	1.01
40665574--40666066	44	11.4	43	89	5	691	25	16	27	30	1.96
40665954--40666018	34	1.9	34	93	0	112	21	23	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40665910--40666062	78	2.0	78	89	5	238	23	18	28	29	1.98
40665986--40666101	44	2.6	44	83	5	128	26	19	24	29	1.99
40665861--40666100	122	2.0	122	84	6	317	25	17	26	30	1.97
40666077--40666361	88	3.3	87	67	15	246	28	20	25	25	1.99
40666003--40666367	172	2.1	175	88	3	549	28	18	26	26	1.98
40666035--40666405	172	2.1	175	87	3	534	28	18	25	27	1.98
40666383--40666498	44	2.7	44	82	4	128	31	16	21	31	1.95
40667012--40667065	19	2.8	19	100	0	108	37	11	16	35	1.84
40667012--40667089	19	3.8	22	89	6	87	37	8	16	37	1.80
40667288--40667332	23	2.0	23	81	0	54	22	0	15	62	1.33
40667478--40667526	23	2.2	22	82	10	55	36	2	0	61	1.08
40668944--40669195	27	9.4	27	84	0	317	19	17	21	41	1.91
40668944--40669219	54	5.1	54	86	0	365	19	16	21	42	1.89
40668944--40669195	81	3.1	81	86	0	353	19	17	21	41	1.91
40672755--40672818	32	2.0	33	93	3	112	39	7	32	20	1.81
40676322--40676352	15	2.1	14	94	5	53	35	9	0	54	1.33
40676510--40676608	43	2.3	43	80	3	110	26	19	26	28	1.99
40678012--40678073	32	2.0	31	84	9	81	41	6	4	46	1.51
40682545--40682613	30	2.3	31	80	5	79	23	10	4	62	1.45
40682948--40682972	11	2.3	11	100	0	50	48	8	0	44	1.32
40683491--40683561	31	2.3	31	92	2	115	45	14	11	29	1.79
40690916--40690995	3	26.7	3	87	0	61	36	0	10	53	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40691267--40691333	18	3.9	18	66	15	52	43	8	0	47	1.34
40694811--40694857	6	7.7	6	90	4	76	48	0	12	38	1.41
40694906--40695129	113	2.0	115	94	1	398	36	9	19	34	1.84
40698295--40698403	3	36.3	3	70	14	73	62	1	34	0	1.12
40698294--40698344	11	4.6	11	78	11	52	64	0	33	1	1.05
40698310--40698342	16	2.1	16	94	0	57	66	0	33	0	0.92
40698309--40698424	61	1.9	60	81	10	137	61	1	37	0	1.07
40698650--40698712	30	2.1	30	96	0	117	23	9	9	57	1.60
40698698--40698766	22	3.1	21	78	17	68	23	1	10	65	1.31
40698707--40698763	12	4.8	12	77	16	64	22	0	8	68	1.17
40698950--40699801	158	5.3	159	91	3	1354	54	8	8	29	1.58
40698950--40699801	321	2.7	320	92	2	1403	54	8	8	29	1.58
40701460--40701515	25	2.2	25	80	3	67	21	7	10	60	1.53
40705160--40705333	40	4.5	37	72	16	131	50	12	5	32	1.61
40705190--40705331	76	1.9	76	88	2	214	51	12	5	30	1.63
40705538--40705607	6	11.0	6	74	17	52	2	24	0	72	0.98
40705549--40705604	13	4.2	13	75	18	53	1	26	0	71	0.96
40705549--40705604	20	2.8	21	76	15	64	1	26	0	71	0.96
40719867--40719909	21	2.0	21	86	0	59	27	18	20	32	1.96
40720701--40720747	12	3.5	13	81	18	53	31	2	12	53	1.51
40724220--40724250	16	1.9	16	93	0	53	54	0	35	9	1.33
40725262--40725294	15	2.2	16	89	10	52	60	3	0	36	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40732986--40733028	16	2.5	18	88	7	63	34	2	2	60	1.22
40734050--40734165	59	2.0	58	91	1	187	44	1	11	42	1.50
40734054--40734181	59	2.2	59	86	6	172	46	1	11	40	1.50
40744250--40744311	31	2.0	31	90	0	97	25	24	27	22	2.00
40753319--40753368	23	2.2	23	88	0	73	24	20	26	30	1.98
40762830--40763221	29	13.5	29	72	11	94	23	27	13	35	1.93
40762835--40763193	58	6.2	58	72	11	184	22	27	14	36	1.92
40762927--40763221	87	3.4	87	79	4	344	23	28	13	34	1.93
40762927--40763221	29	10.2	29	82	2	283	23	28	13	34	1.93
40765062--40765150	45	2.0	45	82	4	108	26	16	20	35	1.94
40767821--40767871	23	2.2	23	86	6	68	43	19	7	29	1.79
40768322--40768355	12	2.8	13	86	13	54	44	0	0	55	0.99
40768353--40768379	11	2.5	11	100	0	54	25	0	0	74	0.83
40775898--40775945	22	2.2	22	100	0	96	27	4	14	54	1.59
40778382--40778418	15	2.4	17	82	17	53	35	16	0	48	1.46
40779146--40779501	133	2.7	134	78	8	373	34	13	21	30	1.92
40779146--40779551	133	3.0	134	75	8	369	33	13	20	31	1.92
40782530--40782587	28	2.1	27	84	6	73	5	13	31	50	1.64
40784384--40784422	16	2.5	15	88	8	60	41	0	5	53	1.23
40784494--40784606	9	12.7	9	71	12	81	45	17	2	34	1.63
40784585--40784628	22	2.0	23	86	4	63	54	13	0	31	1.39
40786241--40786370	66	2.0	66	90	0	206	39	17	27	15	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40786689--40787010	42	7.7	42	81	2	306	31	21	20	26	1.98
40787454--40787493	17	2.3	18	95	4	73	60	0	0	40	0.97
40796784--40796822	21	2.0	20	85	10	53	7	30	7	53	1.57
40796884--40796938	14	3.6	14	76	21	56	7	21	1	69	1.23
40798815--40798849	18	2.0	17	88	5	52	31	0	8	60	1.27
40801613--40801646	4	8.5	4	100	0	68	23	0	0	76	0.79
40801616--40801663	8	6.0	8	90	0	51	22	8	2	66	1.29
40801713--40801756	15	2.9	15	82	0	61	20	6	6	65	1.39
40808600--40808820	89	2.5	90	82	3	259	35	14	19	30	1.91
40808511--40809430	44	19.8	46	71	14	374	35	16	18	29	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218