genome.fa.s23.2.7.7.80.10.50.1000.215.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  215  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64361401--64361491	46	2.0	46	93	0	155	38	9	19	31	1.85
64362403--64362440	16	2.4	16	90	0	58	18	18	21	42	1.90
64367174--64367199	12	2.2	12	100	0	52	42	15	23	19	1.89
64375000--64375033	17	2.0	17	94	0	59	44	50	0	5	1.26
64379629--64379662	17	2.0	17	94	0	59	44	50	0	5	1.26
64393436--64393462	4	6.8	4	100	0	54	25	0	0	74	0.83
64403352--64403416	27	2.4	27	94	2	114	36	43	6	13	1.70
64404544--64404575	3	10.3	3	93	6	55	31	3	0	65	1.08
64405107--64405137	16	1.9	16	93	0	53	35	6	3	54	1.42
64417365--64417662	44	6.9	44	72	10	177	30	20	22	26	1.98
64417409--64417855	44	10.4	44	67	12	146	31	19	21	27	1.98
64417452--64417778	173	1.9	170	87	5	480	30	19	22	27	1.98
64417620--64417869	127	2.0	127	88	3	378	32	18	21	28	1.97
64418154--64418222	27	2.6	27	95	2	122	36	42	7	14	1.73
64419914--64419948	18	1.9	18	94	0	61	37	5	2	54	1.39
64423397--64423445	14	3.6	14	71	20	50	14	16	14	55	1.70
64423395--64423447	26	2.0	26	96	0	97	18	15	13	52	1.74
64424427--64424488	24	2.5	25	89	5	99	25	19	41	12	1.87
64424975--64425025	15	3.3	15	86	5	66	35	3	0	60	1.15
64424983--64425025	8	5.5	8	80	5	52	34	2	0	62	1.08
64427125--64427176	26	2.0	26	85	3	70	53	11	13	21	1.70
64428944--64428982	14	2.5	16	84	15	55	35	5	0	58	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64431357--64431398	21	2.0	22	85	4	59	38	4	9	47	1.57
64435076--64435596	189	2.7	188	84	4	634	33	20	16	29	1.95
64449224--64449545	174	1.9	174	82	2	405	31	16	19	32	1.94
64456443--64456517	30	2.5	30	85	6	91	37	24	25	13	1.91
64458278--64458315	17	2.2	18	85	4	51	73	2	2	21	1.07
64466043--64466086	21	2.0	22	91	4	72	34	11	15	38	1.84
64471904--64471941	17	2.2	17	86	9	51	26	0	5	68	1.11
64475191--64475283	31	2.9	32	79	7	100	15	18	20	46	1.84
64488016--64488062	20	2.3	21	82	17	64	36	0	8	55	1.31
64491527--64491569	16	2.7	16	89	7	61	34	18	2	44	1.63
64491670--64491702	2	16.5	2	100	0	66	51	0	0	48	1.00
64513396--64513427	6	5.3	6	100	0	64	46	37	0	15	1.46
64532936--64532968	16	2.0	17	94	5	59	63	0	6	30	1.18
64540157--64540214	18	3.1	19	80	7	57	37	1	0	60	1.07
64546552--64546593	22	1.9	22	85	0	57	47	4	2	45	1.36
64549634--64549659	6	4.3	6	100	0	52	84	0	15	0	0.62
64552473--64552508	11	3.3	11	88	11	56	33	0	0	66	0.92
64567919--64567961	19	2.3	19	84	4	61	39	0	2	58	1.11
64578115--64578148	16	2.1	17	88	5	52	41	2	0	55	1.15
64581692--64581757	31	2.1	31	88	5	98	36	7	12	43	1.70
64591148--64591196	26	1.9	26	84	12	66	67	8	6	18	1.37
64591766--64591814	21	2.3	21	92	0	80	57	8	22	12	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64597326--64597365	21	1.9	21	89	0	62	12	17	15	55	1.70
64606948--64607176	112	2.0	112	98	0	440	38	22	13	25	1.90
64613683--64613769	43	2.0	43	100	0	174	29	16	32	21	1.95
64617283--64617323	21	2.0	21	90	0	64	19	29	21	29	1.98
64627587--64627710	63	1.9	63	80	3	140	37	6	1	54	1.36
64627614--64627673	20	3.2	20	81	9	72	38	5	1	55	1.32
64627635--64627686	24	2.2	24	86	3	70	32	5	1	59	1.32
64631433--64631470	15	2.5	15	91	4	58	63	10	5	21	1.46
64651091--64651132	22	1.9	22	85	0	57	71	2	9	16	1.23
64651818--64651855	15	2.4	16	91	4	60	63	10	5	21	1.46
64665782--64665817	16	2.2	16	100	0	72	63	13	5	16	1.47
64679043--64679077	18	1.9	18	94	0	61	51	14	8	25	1.70
64685166--64685217	24	2.2	24	89	0	77	55	9	1	32	1.43
64688087--64688126	18	2.2	19	86	13	57	37	0	15	47	1.45
64700134--64700244	57	1.9	58	92	1	188	27	16	9	47	1.76
64710917--64710957	21	2.0	21	81	18	50	31	19	26	21	1.97
64715585--64715695	57	1.9	58	90	1	179	29	16	6	47	1.71
64721427--64721460	16	2.1	16	88	0	50	50	14	17	17	1.79
64724259--64724299	21	2.0	21	90	0	64	29	21	29	19	1.98
64726204--64726237	16	2.1	16	88	0	50	50	14	17	17	1.79
64729546--64729570	8	3.1	8	100	0	50	72	0	0	28	0.86
64731869--64731893	7	3.6	7	100	0	50	44	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64738211--64738249	3	12.3	3	84	10	51	28	2	5	64	1.28
64738254--64738299	22	2.0	23	83	4	58	39	6	2	52	1.40
64738265--64738309	22	2.0	22	83	8	56	35	11	0	53	1.37
64750892--64751271	44	8.8	43	71	12	228	32	20	20	26	1.97
64752875--64752913	3	12.3	3	84	10	51	28	2	5	64	1.28
64752918--64752963	22	2.0	23	83	4	58	39	6	2	52	1.40
64752929--64752973	22	2.0	22	83	8	56	35	11	0	53	1.37
64757409--64757514	36	2.9	36	91	0	185	27	11	26	34	1.90
64757210--64757731	285	1.8	285	89	1	814	30	13	26	29	1.95
64759653--64759678	13	2.0	13	100	0	52	7	23	0	69	1.14
64761502--64761559	30	1.9	31	86	10	84	32	0	3	63	1.11
64773385--64773427	20	2.2	20	87	4	61	18	11	13	55	1.68
64775379--64775415	18	2.2	18	85	9	51	56	2	0	40	1.13
64778258--64778376	30	3.8	30	75	14	100	47	2	12	37	1.55
64785422--64785523	44	2.3	43	79	14	102	46	0	1	51	1.12
64785461--64785538	31	2.6	30	76	15	79	47	0	1	51	1.09
64785487--64785548	30	2.0	31	82	14	76	50	0	0	50	1.00
64787884--64787926	11	3.8	11	84	6	59	58	0	2	39	1.11
64787884--64787929	12	4.0	12	81	18	62	58	0	2	39	1.10
64791798--64791834	14	2.6	14	95	0	65	56	10	8	24	1.60
64792703--64792743	19	2.2	19	86	4	57	58	9	12	19	1.61
64798420--64798466	22	2.1	23	84	7	62	57	2	0	40	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64800622--64800653	16	1.9	17	93	6	57	25	21	0	53	1.46
64801365--64801405	21	1.9	22	85	5	57	56	2	0	41	1.13
64801532--64801596	30	2.3	27	84	7	76	44	3	0	52	1.16
64801562--64801599	16	2.4	17	82	13	53	47	0	0	52	1.00
64806577--64806604	12	2.3	12	100	0	56	28	14	42	14	1.84
64808244--64808323	42	1.9	42	92	5	135	45	5	7	42	1.54
64809425--64809468	23	2.0	23	86	4	63	31	4	6	56	1.46
64822504--64822572	35	1.9	36	94	2	122	34	2	27	34	1.72
64829919--64829954	7	5.1	7	100	0	72	55	13	13	16	1.69
64831945--64831980	17	2.0	18	89	10	56	16	5	0	77	0.94
64834135--64834258	30	4.1	30	93	1	203	25	24	6	43	1.78
64834145--64834252	15	7.2	15	67	12	78	25	22	7	44	1.79
64838821--64838914	30	3.1	30	90	1	143	25	24	6	43	1.78
64838831--64838908	15	5.2	15	67	11	61	25	21	7	44	1.79
64844503--64844543	21	2.0	21	90	0	64	19	29	21	29	1.98
64859028--64859058	16	1.9	16	93	0	53	19	0	9	70	1.14
64859495--64859558	31	2.0	32	82	8	78	34	14	9	42	1.77
64860052--64860080	14	2.1	14	100	0	58	34	13	31	20	1.92
64860488--64860560	33	2.2	33	80	7	87	36	27	20	15	1.92
64862625--64862671	21	2.2	22	92	3	78	21	38	19	21	1.94
64867856--64867936	40	2.0	40	97	0	153	28	38	9	23	1.87
64882666--64882763	42	2.3	42	87	3	135	20	27	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64890427--64890626	99	2.0	99	100	0	400	20	12	20	47	1.82
64896874--64896930	19	2.8	20	76	20	55	40	15	3	40	1.65
64898354--64898397	23	1.9	22	82	17	54	36	25	0	38	1.56
64898489--64898680	51	3.8	52	73	11	164	30	27	17	24	1.97
64900465--64900525	22	2.6	22	77	10	59	67	0	1	31	1.01
64900459--64900525	23	2.8	25	82	11	86	67	0	1	31	1.00
64902878--64902927	24	2.1	24	84	0	64	36	2	8	54	1.42
64918889--64918951	30	2.0	32	87	6	94	30	9	6	53	1.58
64922795--64922830	18	2.0	18	100	0	72	16	38	27	16	1.90
64925171--64925327	82	1.9	81	89	7	248	37	12	4	45	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218