genome.fa.s23.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  51  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15521496--15521553	30	1.9	30	96	0	107	24	31	31	13	1.94
15527587--15527664	41	1.9	41	91	0	129	32	15	6	46	1.71
15531136--15531173	18	2.1	19	90	5	60	28	0	0	71	0.87
15531142--15531182	18	2.3	18	83	4	57	31	0	0	68	0.90
15538549--15538658	57	1.9	58	94	1	195	54	10	10	25	1.64
15539112--15539166	19	2.8	20	88	2	85	56	40	0	3	1.17
15541642--15541677	12	3.0	12	95	0	63	27	25	5	41	1.77
15550960--15551061	30	3.4	30	86	2	134	30	21	2	45	1.67
15551643--15551685	12	3.6	12	81	12	61	81	0	18	0	0.69
15551650--15551682	10	3.3	10	88	12	50	81	0	18	0	0.68
15551643--15551684	14	3.1	14	86	3	59	83	0	16	0	0.65
15551680--15551706	11	2.5	11	100	0	54	70	0	7	22	1.12
15552295--15552482	38	5.1	37	76	6	150	37	12	9	40	1.76
15552285--15552406	17	6.8	17	69	15	77	31	12	9	45	1.74
15552307--15552482	74	2.4	75	82	4	196	36	13	9	40	1.76
15552442--15552517	36	2.1	36	85	4	100	39	13	9	38	1.76
15552460--15552536	36	2.1	37	88	9	115	40	12	10	36	1.78
15552460--15552551	36	2.6	35	84	6	87	38	13	9	39	1.77
15562839--15562874	12	3.0	12	92	8	56	27	25	5	41	1.77
15567380--15567427	18	2.7	18	86	0	78	54	41	0	4	1.20
15567878--15567955	34	2.3	35	77	2	86	35	7	5	51	1.53
15569861--15569896	12	3.0	12	95	0	63	27	25	5	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15578017--15578191	71	2.5	70	85	2	228	28	13	22	34	1.93
15578209--15578567	71	4.9	70	79	14	370	26	16	22	33	1.95
15578209--15578414	67	3.0	68	86	7	256	29	15	22	32	1.95
15578400--15578428	13	2.2	13	100	0	58	13	13	6	65	1.45
15578358--15578847	87	6.3	79	76	17	328	28	16	20	34	1.94
15578555--15578582	14	2.0	14	100	0	56	14	21	7	57	1.61
15578279--15578853	152	3.7	155	84	8	660	29	16	20	34	1.94
15578585--15578847	79	3.5	75	82	8	320	32	14	19	33	1.92
15579005--15579146	72	2.0	73	91	1	232	21	15	23	38	1.92
15579138--15579337	73	2.8	71	81	2	238	32	14	20	33	1.93
15579357--15579391	14	2.5	14	95	0	61	17	14	8	60	1.58
15578997--15579428	233	1.9	232	82	7	554	27	15	21	34	1.95
15579446--15579481	14	2.6	14	95	4	65	33	13	5	47	1.67
15579301--15579551	88	2.8	89	83	5	337	25	17	20	36	1.94
15579578--15579637	30	2.0	30	90	6	95	20	10	28	41	1.84
15580457--15580505	18	2.7	18	93	0	89	59	36	0	4	1.17
15580784--15580827	13	3.4	13	75	12	54	0	11	6	81	0.86
15584542--15584629	31	2.9	31	81	6	108	39	4	13	42	1.65
15584543--15584674	61	2.1	62	81	1	149	43	6	12	37	1.68
15587011--15587077	34	2.0	35	88	5	102	50	1	0	47	1.10
15587043--15587091	25	2.0	25	84	4	64	51	2	2	44	1.24
15589373--15589417	17	2.6	17	80	10	56	73	8	6	11	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15589459--15589494	18	2.0	18	88	0	54	22	30	5	41	1.76
15592218--15592343	38	3.2	38	70	20	123	46	6	9	37	1.62
15592195--15592355	80	2.0	80	97	0	304	44	8	9	37	1.67
15593082--15593130	23	2.1	23	82	14	57	55	6	8	30	1.54
15604388--15604434	23	2.0	23	87	8	67	57	0	2	40	1.11
15604715--15604761	22	2.1	23	84	11	62	44	4	12	38	1.62
15607411--15607437	9	3.0	9	100	0	54	44	0	33	22	1.53
15608238--15608513	101	2.7	102	83	4	335	26	14	26	31	1.95
15613247--15613471	109	2.1	109	97	0	423	28	20	18	32	1.96
15617277--15617332	27	2.1	27	96	0	103	37	12	14	35	1.84
15617361--15617413	6	8.8	6	95	0	70	58	0	24	16	1.38
15617361--15617413	18	2.9	18	88	0	79	58	0	24	16	1.38
15641617--15641655	21	2.0	21	85	10	55	35	20	17	25	1.95
15647814--15647865	26	2.0	26	96	0	95	38	17	11	32	1.85
15650107--15650144	20	1.9	20	88	0	58	63	23	13	0	1.30
15654997--15655112	54	2.1	55	81	10	132	22	22	33	21	1.97
15663410--15663458	25	2.0	25	87	0	71	32	46	6	14	1.69
15669924--15670286	40	9.1	40	85	3	437	15	30	18	36	1.92
15669931--15670230	20	15.1	20	67	2	154	14	29	17	38	1.90
15670253--15670311	20	3.0	20	74	0	73	10	30	23	35	1.88
15674899--15674938	21	1.9	21	85	10	55	57	0	12	30	1.36
15680866--15680912	21	2.2	22	92	3	78	21	19	38	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15693244--15693287	23	1.9	23	86	9	63	45	0	2	52	1.13
15694569--15694606	16	2.4	16	95	0	67	36	2	34	26	1.71
15694588--15694680	44	2.1	43	84	13	118	33	4	26	35	1.76
15694819--15695292	120	4.0	119	94	2	807	51	4	1	42	1.30
15695980--15696038	30	2.0	30	93	0	100	45	13	20	20	1.84
15701156--15701297	50	2.8	51	77	10	150	28	21	26	23	1.99
15706678--15706756	37	2.1	37	88	0	113	41	26	13	17	1.87
15720582--15720675	42	2.2	42	84	1	125	35	25	10	28	1.89
15720582--15720807	48	5.0	42	80	10	155	31	24	15	28	1.96
15720636--15720820	48	3.9	48	87	2	241	30	24	16	28	1.97
15720637--15720820	95	1.9	95	84	4	246	30	23	16	28	1.97
15738335--15738423	19	4.7	19	75	0	79	34	26	16	21	1.95
15738328--15738423	38	2.5	38	81	0	102	34	27	17	20	1.95
15748740--15748791	20	2.6	20	87	0	68	40	5	15	38	1.71
15781448--15781710	45	5.9	45	84	0	303	37	16	20	25	1.93
15781416--15781687	89	3.0	89	83	1	220	38	15	20	25	1.91
15781453--15781710	134	1.9	134	84	1	347	37	16	20	25	1.93
15781475--15781687	89	2.4	90	86	1	293	38	15	19	26	1.91
15792846--15792946	50	2.0	50	88	3	150	26	8	21	42	1.82
15794543--15794601	3	19.7	3	89	0	55	33	10	0	55	1.33
15807595--15807653	26	2.3	26	85	5	75	44	6	10	38	1.65
15817570--15817603	16	2.1	16	88	0	50	58	2	0	38	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15817685--15817730	19	2.5	19	82	6	60	45	0	4	50	1.21
15818103--15818127	13	1.9	13	100	0	50	28	0	0	72	0.86
15818928--15818967	21	2.0	21	85	9	57	5	30	0	65	1.14
15832756--15832911	25	6.4	24	79	9	156	24	23	17	34	1.96
15832756--15832911	49	3.2	48	82	6	163	24	23	17	34	1.96
15832806--15832927	50	2.5	49	84	5	140	27	24	17	31	1.97
15832784--15832931	25	6.0	25	76	12	90	26	25	16	31	1.97
15834058--15834087	16	1.9	16	93	6	53	30	0	20	50	1.49
15835117--15835155	20	1.9	21	85	15	55	33	15	2	48	1.58
15836134--15836172	20	1.9	21	89	5	62	35	43	7	12	1.72
15840390--15840416	13	2.1	13	100	0	54	48	0	7	44	1.31
15843687--15843786	43	2.5	40	77	14	109	33	33	17	17	1.92
15843712--15843909	43	4.6	43	85	0	252	27	33	17	21	1.96
15848153--15848222	19	3.6	19	71	19	56	51	2	1	44	1.25
15849738--15849984	41	5.8	41	84	9	314	28	29	21	20	1.98
15849876--15849984	42	2.6	41	92	2	182	29	31	21	18	1.97
15849746--15849984	133	1.8	132	94	0	424	28	29	21	20	1.98
15850165--15850190	12	2.2	12	100	0	52	46	30	15	7	1.74
15852985--15853012	11	2.5	11	100	0	56	53	17	0	28	1.44
15854030--15854077	18	2.8	18	79	17	57	75	10	2	12	1.14
15854030--15854079	19	2.8	19	82	11	61	74	10	2	14	1.16
15855638--15855690	20	2.5	22	81	9	65	69	1	3	24	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15855647--15855706	20	3.4	17	71	22	52	71	3	3	21	1.15
15867183--15867228	20	2.4	19	82	13	58	71	4	0	23	1.03
15870061--15870139	37	2.1	37	86	4	106	25	29	18	26	1.98
15870258--15870891	47	13.4	47	93	2	1038	29	28	8	33	1.87
15870258--15870887	238	2.7	236	91	2	1023	29	28	8	33	1.87
15870258--15870887	191	3.3	190	93	2	1061	29	28	8	33	1.87
15878860--15878912	14	3.7	14	77	5	61	79	1	0	18	0.83
15878883--15878924	20	2.1	20	91	8	68	71	2	0	26	0.98
15879225--15879272	3	16.7	3	79	16	57	66	2	0	31	1.03
15879225--15879271	11	3.9	11	80	20	58	68	2	0	29	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218