genome.fa.s23.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  126  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38288746--38288815	30	2.3	29	83	7	86	22	25	14	37	1.92
38295342--38295605	45	5.9	45	92	0	411	25	19	15	38	1.92
38296061--38296205	66	2.1	67	94	3	256	48	14	20	16	1.80
38298578--38298705	45	2.8	45	92	0	211	25	18	15	39	1.90
38299774--38300083	45	6.9	45	98	0	593	37	15	20	26	1.92
38308167--38308221	15	3.8	15	85	2	69	1	21	1	74	1.01
38312365--38312406	17	2.4	18	80	11	52	76	4	16	2	1.07
38315358--38315412	28	2.0	27	85	7	74	65	5	10	18	1.42
38315392--38315433	21	2.0	22	90	4	68	76	4	7	11	1.15
38317688--38317741	23	2.2	25	78	15	60	62	3	22	11	1.43
38327406--38327434	12	2.3	13	94	5	51	75	0	0	24	0.80
38328791--38328842	23	2.3	22	75	21	54	9	23	1	65	1.32
38328800--38328854	12	4.6	12	73	15	51	12	23	0	63	1.29
38328836--38328873	17	2.2	18	85	4	51	10	23	2	63	1.39
38331667--38331724	22	2.5	23	89	10	84	72	1	6	18	1.16
38331682--38331727	13	3.8	13	83	11	62	73	0	6	19	1.04
38334072--38334134	21	3.0	21	88	2	81	33	31	4	30	1.78
38334436--38334470	12	2.8	12	95	4	61	77	0	8	14	0.99
38334436--38334474	13	3.1	13	88	7	62	71	0	10	17	1.12
38336645--38336698	17	3.2	17	81	0	63	75	3	12	7	1.14
38340575--38340637	21	3.0	21	88	2	81	33	31	4	30	1.78
38341315--38341351	19	1.9	20	88	5	58	32	8	35	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38354024--38354074	26	2.0	26	96	0	93	11	23	35	29	1.90
38353946--38354167	103	2.2	103	93	1	374	18	18	31	31	1.95
38354087--38354237	71	2.1	72	91	2	243	23	16	29	30	1.96
38361504--38361725	104	2.2	103	91	3	358	18	18	31	31	1.95
38361646--38361795	70	2.1	72	90	3	234	23	16	29	30	1.96
38364332--38364437	48	2.2	47	82	12	119	16	23	1	58	1.48
38365464--38365544	29	2.8	29	80	10	94	8	14	4	71	1.27
38367032--38367078	20	2.3	20	81	0	58	23	12	34	29	1.92
38367997--38368057	22	2.7	23	89	7	88	21	13	0	65	1.26
38367997--38368066	22	3.0	22	85	8	59	27	12	0	60	1.33
38369438--38369491	25	2.2	25	86	0	72	18	25	14	40	1.89
38374689--38374785	30	3.2	30	75	2	106	27	26	16	28	1.97
38376475--38376526	12	4.4	12	87	4	79	78	3	5	11	1.05
38376475--38376526	23	2.2	23	96	3	95	78	3	5	11	1.05
38377397--38377458	5	12.0	5	76	19	56	75	1	17	4	1.05
38377527--38377558	12	2.8	12	95	4	57	78	0	15	6	0.95
38379671--38379767	30	3.2	30	73	2	97	27	26	15	29	1.96
38391073--38391130	10	5.7	10	76	11	64	29	27	13	29	1.94
38391073--38391133	20	3.0	20	83	9	79	27	26	13	32	1.93
38392464--38392540	12	5.7	13	74	21	61	72	5	9	12	1.25
38392464--38392526	29	2.1	30	85	2	83	74	3	7	14	1.16
38392505--38392555	16	3.5	15	78	21	56	70	7	15	5	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38392506--38392577	28	2.6	27	78	6	81	69	5	15	9	1.34
38392463--38392541	41	1.9	42	84	2	106	72	6	8	12	1.28
38392505--38392577	29	2.6	28	81	8	87	68	6	15	9	1.37
38393441--38393475	18	1.9	18	88	11	54	57	0	20	22	1.41
38395527--38395584	10	5.7	10	76	11	64	29	27	13	29	1.94
38395527--38395587	20	3.0	20	83	9	79	27	26	13	32	1.93
38396793--38396855	21	3.0	21	88	2	90	30	3	33	33	1.74
38397934--38397975	10	4.3	10	78	6	50	28	11	23	35	1.91
38400989--38401041	19	2.8	20	82	8	65	7	15	1	75	1.11
38400989--38401041	20	2.7	19	85	5	61	7	15	1	75	1.11
38400998--38401041	18	2.3	20	84	7	56	6	13	2	77	1.07
38403610--38403672	21	3.0	21	88	2	90	30	3	33	33	1.74
38404751--38404792	10	4.3	10	78	6	50	28	11	23	35	1.91
38406972--38407192	80	2.8	80	79	7	193	27	26	20	25	1.99
38407012--38407192	80	2.3	80	83	9	210	27	27	20	24	1.99
38407009--38407192	40	4.6	40	81	7	187	28	26	20	24	1.99
38413617--38413680	33	1.9	34	93	3	112	40	12	9	37	1.75
38417912--38418169	80	3.3	79	79	4	234	25	20	27	25	1.99
38417912--38418134	40	5.6	39	81	5	214	25	20	27	26	1.99
38417988--38418169	79	2.3	80	82	1	215	26	19	28	25	1.99
38419954--38419995	12	3.3	12	87	9	57	64	2	11	21	1.38
38425599--38425720	50	2.4	51	83	5	167	28	26	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38425962--38426027	21	3.0	22	84	4	71	30	3	30	36	1.73
38430368--38430406	17	2.2	19	86	9	55	28	5	2	64	1.28
38430629--38430700	22	3.2	22	71	11	65	26	5	31	36	1.80
38433000--38433058	20	3.0	21	80	9	79	27	18	28	25	1.98
38434097--38434256	39	4.1	39	97	0	295	49	11	8	30	1.70
38437555--38437608	20	2.8	20	78	13	58	31	11	29	27	1.91
38437572--38437628	20	2.8	21	84	10	66	29	12	28	29	1.93
38437590--38437628	10	3.7	11	86	10	55	30	12	25	30	1.93
38439026--38439095	36	1.9	36	82	5	88	22	17	32	27	1.96
38441838--38441874	19	1.9	19	89	10	58	54	10	0	35	1.36
38443598--38443796	47	4.2	47	89	1	292	27	30	9	32	1.89
38443781--38443808	14	2.0	14	100	0	56	28	28	14	28	1.95
38443734--38443855	61	2.0	61	93	0	208	30	28	9	31	1.88
38443687--38443897	108	2.0	108	95	0	377	29	29	9	31	1.88
38443795--38443897	47	2.2	47	96	0	188	30	30	8	31	1.87
38448214--38448398	79	2.3	81	84	7	236	24	22	27	25	2.00
38448215--38448398	40	4.6	40	83	9	216	24	22	27	25	2.00
38448215--38448431	79	2.7	79	81	7	201	25	22	27	24	2.00
38452979--38453176	50	3.8	50	81	4	207	22	29	22	25	1.99
38453514--38453580	30	2.2	29	78	5	71	29	20	8	40	1.83
38459103--38459181	37	2.1	37	88	4	115	25	30	18	25	1.98
38459300--38459459	47	3.4	47	98	0	302	30	30	7	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38463132--38463157	13	2.0	13	100	0	52	46	7	0	46	1.31
38463547--38463585	20	1.9	21	89	5	62	35	12	28	23	1.91
38471401--38471427	14	1.9	14	100	0	54	33	22	14	29	1.94
38478002--38478056	14	3.8	14	77	15	58	1	20	1	76	0.97
38477999--38478046	24	2.0	24	84	11	64	4	18	2	75	1.07
38478002--38478052	15	3.5	15	83	2	68	1	17	1	78	0.94
38486312--38486392	12	6.8	12	69	17	53	12	24	1	61	1.38
38486327--38486382	18	3.0	20	68	26	59	10	26	0	62	1.28
38486422--38486468	15	3.1	15	84	9	60	12	17	0	70	1.17
38487516--38487567	22	2.4	21	81	9	59	7	13	1	76	1.07
38489111--38489157	20	2.3	20	82	7	60	25	17	29	27	1.97
38490662--38490738	38	2.0	38	97	0	145	33	20	19	25	1.96
38497434--38497466	13	2.5	13	90	9	50	18	3	3	75	1.06
38497522--38497546	11	2.3	11	100	0	50	20	12	0	68	1.21
38498829--38498874	18	2.6	19	80	10	53	54	10	0	34	1.36
38502526--38502576	13	3.8	13	81	5	57	19	5	13	60	1.53
38503712--38503748	19	1.9	19	88	0	56	51	0	5	43	1.24
38510171--38510204	13	2.5	13	90	4	50	70	5	0	23	1.09
38511972--38512050	37	2.1	37	90	0	122	25	31	18	24	1.98
38512169--38512620	47	9.4	47	89	3	643	29	28	8	32	1.87
38515879--38516064	44	4.2	44	83	1	239	25	23	22	27	2.00
38515879--38516064	88	2.1	88	89	2	293	25	23	22	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38516064--38516759	87	8.0	87	80	5	655	24	26	23	26	2.00
38516064--38516759	175	4.0	169	80	7	646	24	26	23	26	2.00
38516102--38516759	262	2.5	257	87	2	897	24	26	23	25	2.00
38516203--38516759	44	12.9	43	70	8	252	24	26	23	25	2.00
38528980--38529028	13	3.6	14	78	10	57	67	6	0	26	1.14
38529887--38529922	18	2.0	18	94	0	63	0	16	2	80	0.83
38533435--38533473	18	2.1	19	86	13	55	51	10	17	20	1.74
38542030--38542077	23	2.1	23	100	0	96	29	12	4	54	1.56
38543127--38543161	15	2.2	16	90	5	54	11	22	0	65	1.24
38550402--38550443	16	2.5	17	84	7	59	42	11	11	33	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218