genome.fa.s23.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  92  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26737673--26737734	21	3.0	21	84	13	67	29	0	27	43	1.55
26737715--26737789	35	2.1	35	97	0	141	24	0	32	44	1.54
26737751--26738523	23	31.6	23	70	25	360	27	0	26	45	1.57
26737851--26737906	21	2.6	22	91	5	96	26	0	25	48	1.52
26737745--26737982	29	8.3	29	72	20	164	26	0	27	44	1.60
26737826--26738232	124	3.3	123	89	7	651	26	0	26	45	1.59
26737652--26738032	170	2.2	173	88	7	571	27	0	26	45	1.58
26737988--26738032	22	2.2	20	88	11	65	28	0	24	46	1.53
26738020--26738384	29	12.1	29	68	14	157	27	0	26	45	1.56
26738101--26738155	21	2.5	22	94	5	103	23	0	27	49	1.51
26738165--26738267	35	3.1	35	86	8	137	25	0	30	43	1.61
26738020--26738482	182	2.7	179	84	11	560	27	0	26	46	1.55
26738165--26738290	64	2.1	58	84	11	155	26	0	30	42	1.61
26738283--26738341	20	2.8	20	92	5	91	25	0	25	49	1.51
26738202--26738524	112	2.8	116	81	13	346	27	0	26	45	1.56
26738325--26738407	29	3.1	28	75	20	95	30	0	24	45	1.53
26738519--26738656	25	5.7	25	78	14	173	43	15	1	39	1.55
26738529--26738707	45	3.9	44	78	14	200	46	14	1	37	1.52
26739809--26739842	7	4.9	7	86	13	52	58	11	0	29	1.33
26740952--26740993	11	3.8	11	87	0	66	54	7	19	19	1.66
26741453--26741671	43	5.2	42	76	12	180	23	15	25	35	1.95
26741453--26741640	43	4.4	42	79	10	186	22	16	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26741480--26741676	85	2.3	84	92	0	322	24	16	25	34	1.95
26747547--26747596	26	1.9	26	87	0	73	18	22	34	26	1.96
26747612--26747763	43	3.5	44	77	9	161	23	13	26	36	1.92
26747611--26747729	42	2.8	43	80	10	136	25	15	24	35	1.94
26747610--26747810	85	2.4	84	85	1	267	23	14	24	36	1.93
26754891--26754942	14	3.7	14	85	10	70	11	3	0	84	0.74
26754890--26754941	23	2.2	24	83	13	72	11	5	0	82	0.82
26754905--26754941	17	2.2	17	90	4	58	10	5	0	83	0.79
26754984--26755162	60	3.0	60	76	9	152	32	21	5	40	1.75
26754984--26755115	30	4.4	30	82	3	142	34	20	3	40	1.70
26755761--26755794	16	2.1	16	100	0	68	26	41	26	5	1.78
26755979--26756032	20	2.8	20	85	2	74	16	46	29	7	1.74
26756746--26756885	19	7.6	17	70	20	52	36	12	9	41	1.76
26756700--26757091	17	21.9	17	69	16	131	31	13	11	43	1.79
26756800--26756884	19	4.5	19	80	8	75	38	11	7	42	1.69
26756791--26756884	38	2.4	39	77	12	95	37	11	7	43	1.69
26756753--26757125	35	10.4	34	69	14	145	32	12	10	43	1.78
26756926--26757091	53	3.2	52	76	11	160	31	12	11	44	1.78
26760139--26760178	7	6.0	7	91	2	57	12	0	17	70	1.18
26763789--26763838	21	2.3	21	83	10	57	50	4	4	42	1.40
26764257--26764315	25	2.3	27	77	11	70	47	0	3	49	1.18
26767382--26767415	16	2.1	16	88	0	50	35	20	2	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26771142--26771629	176	2.8	176	94	1	815	28	18	19	33	1.95
26772115--26772154	20	2.0	20	100	0	80	35	5	25	35	1.78
26773241--26773288	19	2.5	20	80	16	57	29	0	4	66	1.10
26777988--26778215	114	2.0	114	100	0	456	27	21	19	31	1.97
26780062--26780114	23	2.2	24	87	9	74	58	0	3	37	1.16
26780063--26780122	24	2.5	24	84	10	70	60	0	3	36	1.14
26780861--26780922	31	2.0	31	96	0	115	54	11	9	24	1.65
26787476--26787507	16	2.0	16	93	0	55	40	6	15	37	1.73
26787658--26787994	51	6.6	51	72	9	181	25	16	26	31	1.97
26787759--26787992	101	2.3	101	81	6	260	25	16	27	31	1.96
26787656--26788001	152	2.3	152	90	0	548	25	17	27	30	1.97
26787916--26787996	26	3.2	26	63	16	69	25	13	27	33	1.94
26790105--26790168	29	2.2	29	97	0	119	42	15	14	28	1.86
26791063--26791099	19	1.9	19	89	10	58	24	0	2	72	0.97
26791306--26791380	24	3.0	24	77	15	80	30	0	1	68	0.98
26791395--26791438	22	2.0	23	86	4	63	47	0	0	52	1.00
26791408--26791446	16	2.4	16	86	0	60	41	0	0	58	0.98
26794482--26794736	122	2.1	121	93	2	431	43	0	3	51	1.25
26794965--26795010	16	2.9	16	86	0	65	21	28	6	43	1.77
26795008--26795049	20	2.1	20	100	0	84	45	19	14	21	1.85
26802672--26802719	22	2.2	22	96	0	87	25	35	0	39	1.56
26802693--26802751	30	2.0	30	96	0	109	25	35	3	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26802723--26802773	22	2.3	22	86	6	77	27	35	1	35	1.68
26802672--26802771	52	1.9	52	95	0	182	26	35	2	37	1.68
26802807--26802873	31	2.2	31	97	0	125	35	0	0	64	0.94
26805186--26805606	30	13.8	30	80	13	475	45	25	0	28	1.59
26805207--26805261	23	2.4	23	96	0	101	50	21	0	27	1.49
26805186--26805608	89	4.6	88	83	9	501	45	26	0	28	1.59
26805468--26805496	12	2.3	13	94	5	51	37	48	0	13	1.43
26805439--26805526	42	2.1	42	97	0	167	43	32	0	23	1.54
26805349--26805606	131	2.0	132	93	2	448	45	26	0	27	1.59
26805386--26805584	101	2.0	101	94	0	353	44	27	1	26	1.61
26805186--26805608	59	6.9	59	82	12	493	45	26	0	28	1.59
26813821--26813852	15	2.1	15	100	0	64	46	12	6	34	1.67
26816284--26816512	41	5.6	41	87	1	289	20	19	31	29	1.97
26819657--26819721	32	2.0	33	93	3	114	12	3	15	69	1.31
26820945--26820971	5	5.4	5	100	0	54	81	0	0	18	0.69
26821834--26821980	43	3.4	43	84	3	206	27	31	20	19	1.97
26822055--26822141	41	2.1	42	82	6	106	31	27	11	29	1.92
26822721--26822811	39	2.3	38	81	7	101	32	19	23	24	1.97
26822738--26822832	39	2.4	38	82	3	118	40	22	17	20	1.92
26822868--26823192	41	7.9	41	91	1	490	19	22	28	29	1.98
26823557--26823593	14	2.6	14	86	0	56	24	2	29	43	1.68
26823891--26823935	7	6.4	7	84	0	63	20	0	46	33	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26823904--26823941	14	2.7	14	91	0	58	21	0	47	31	1.51
26828174--26828264	43	2.1	43	87	2	130	35	10	9	43	1.73
26828540--26828765	42	5.3	44	80	9	213	21	15	32	30	1.95
26831653--26831831	95	1.9	95	81	2	216	32	16	24	27	1.96
26833975--26834105	50	2.6	51	78	14	146	23	18	25	32	1.97
26835762--26835795	12	2.8	12	95	0	59	79	2	0	17	0.86
26835838--26835883	12	3.7	12	80	11	56	71	0	6	21	1.08
26835833--26835883	14	3.9	13	85	10	68	64	0	9	25	1.24
26835833--26835883	26	2.0	26	92	3	86	64	0	9	25	1.24
26839984--26840072	45	2.0	45	93	0	151	25	17	23	32	1.97
26845044--26845191	65	2.3	65	89	2	226	44	28	8	18	1.79
26847408--26847444	4	9.2	4	100	0	74	75	24	0	0	0.80
26849518--26849566	22	2.2	22	82	7	64	36	6	16	40	1.73
26851213--26851270	27	2.1	27	96	0	107	20	37	3	37	1.70
26857563--26857622	29	2.1	29	83	0	75	71	1	3	23	1.10
26857571--26857621	18	2.7	18	84	9	57	72	1	3	21	1.11
26857571--26857661	19	4.7	19	75	10	87	65	1	5	27	1.21
26857931--26857993	26	2.4	27	81	5	67	25	1	3	69	1.12
26857997--26858051	28	2.0	28	85	7	76	38	1	1	58	1.20
26872872--26872917	20	2.3	21	75	10	53	73	0	2	23	0.94
26873912--26873958	25	1.9	24	82	4	58	38	0	34	27	1.57
26880553--26880594	21	2.0	21	81	9	50	73	2	16	7	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26883313--26883344	14	2.4	14	90	10	50	65	0	6	28	1.16
26884220--26884328	41	2.7	40	75	4	101	22	13	31	32	1.93
26884735--26884830	21	4.6	21	78	2	95	21	1	28	48	1.57
26884735--26884830	7	13.7	7	76	3	86	21	1	28	48	1.57
26884671--26884839	14	11.9	14	74	9	92	26	1	26	46	1.60
26884824--26884883	21	2.9	21	75	9	61	21	0	43	35	1.53
26884996--26885050	16	3.5	16	80	14	69	47	0	0	52	1.00
26885003--26885059	16	3.5	16	92	7	89	50	1	0	47	1.11
26885003--26885066	16	3.9	15	78	15	56	50	1	1	46	1.20
26885173--26885200	14	2.0	14	100	0	56	14	0	28	57	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218