genome.fa.s23.2.7.7.80.10.50.1000.217.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  217  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65255525--65255592	30	2.3	30	85	10	86	41	5	10	42	1.63
65266895--65267049	31	5.3	30	70	14	90	42	13	3	40	1.63
65271596--65271633	20	1.9	19	89	5	58	39	2	2	55	1.28
65277244--65277489	53	4.7	53	85	2	309	32	15	5	47	1.67
65277244--65277489	105	2.3	104	86	4	341	32	15	5	47	1.67
65281981--65282007	13	2.1	13	100	0	54	37	0	18	44	1.50
65316911--65317136	118	1.9	118	88	5	341	41	17	15	25	1.88
65325633--65325684	24	2.2	24	85	0	68	53	9	3	32	1.51
65327600--65327651	24	2.2	24	85	0	68	53	9	3	32	1.51
65328530--65328835	110	2.7	114	85	8	378	26	12	21	39	1.89
65329229--65329673	194	2.3	194	94	1	784	31	17	18	32	1.94
65329911--65329956	23	2.0	23	82	4	56	21	4	2	71	1.14
65348272--65348305	14	2.3	15	85	5	52	26	2	2	67	1.19
65350391--65350683	108	2.7	108	88	4	414	28	27	22	21	1.99
65354468--65354515	24	2.0	24	83	0	60	4	16	29	50	1.64
65362493--65362527	18	1.9	18	88	0	52	8	14	25	51	1.70
65365961--65366004	11	4.0	11	81	0	52	13	25	52	9	1.70
65369997--65370045	23	2.1	24	84	3	64	8	38	2	51	1.43
65370409--65370490	40	2.1	39	81	6	94	19	32	7	40	1.79
65372710--65372906	87	2.3	86	79	5	213	26	28	24	19	1.99
65377956--65377994	20	2.0	20	89	0	60	25	5	20	48	1.70
65382722--65382762	20	2.0	20	100	0	82	56	19	0	24	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65390378--65390417	6	6.7	6	86	11	55	0	30	22	47	1.52
65390378--65390417	18	2.2	18	95	0	71	0	30	22	47	1.52
65391716--65391793	29	2.8	28	79	11	90	58	3	0	37	1.16
65395696--65395734	3	13.0	3	100	0	78	33	0	0	66	0.92
65396280--65396313	3	11.3	3	87	0	50	32	0	32	35	1.58
65402028--65402058	3	10.3	3	100	0	62	32	0	0	67	0.91
65402605--65402629	3	8.3	3	100	0	50	32	0	32	36	1.58
65409880--65409935	27	2.1	27	89	0	85	46	1	14	37	1.55
65421014--65421071	27	2.1	27	84	6	73	36	5	5	53	1.46
65421740--65422075	173	1.9	174	84	4	455	36	21	11	30	1.89
65424534--65424732	46	4.4	46	92	3	325	33	15	24	27	1.95
65425457--65425507	18	2.8	17	77	13	57	64	1	1	31	1.15
65427391--65427482	3	31.7	3	68	18	52	58	3	4	33	1.34
65427616--65427650	16	2.2	16	90	5	54	77	2	0	20	0.90
65437722--65437760	20	2.0	19	85	5	51	53	5	7	33	1.51
65438339--65438403	32	2.0	32	100	0	130	21	9	24	44	1.81
65441558--65441585	14	2.0	14	100	0	56	35	7	21	35	1.81
65441618--65441675	29	2.0	29	100	0	116	31	3	20	44	1.68
65442824--65442870	21	2.2	21	81	7	60	36	0	2	61	1.08
65444004--65444044	14	2.7	15	85	14	57	68	0	0	31	0.90
65444003--65444052	16	3.2	16	75	13	50	64	0	2	34	1.05
65453585--65453626	20	2.2	20	87	12	61	21	14	0	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65454126--65454169	24	1.9	23	90	9	72	47	0	0	52	1.00
65454122--65454175	24	2.4	22	81	12	65	48	1	0	50	1.11
65454188--65454230	23	2.0	23	86	9	63	48	0	4	46	1.22
65457077--65457157	31	2.5	31	84	4	99	28	18	12	40	1.87
65460446--65460486	16	2.4	16	84	8	55	39	4	0	56	1.21
65463284--65463328	21	2.1	21	95	0	81	28	17	28	24	1.97
65467498--65467641	69	2.1	69	85	2	191	47	12	9	30	1.72
65473701--65474054	105	3.3	108	82	9	401	36	14	16	32	1.88
65475335--65475745	104	3.8	109	80	10	447	36	14	17	31	1.90
65476325--65476382	20	3.3	18	74	23	52	32	3	0	63	1.11
65476488--65476557	31	2.3	31	85	2	88	54	5	8	31	1.54
65483483--65483516	3	11.3	3	100	0	68	67	0	0	32	0.91
65483873--65483915	23	2.0	23	86	9	63	48	4	9	37	1.56
65484822--65484861	21	2.0	20	85	5	53	62	2	0	35	1.09
65489685--65489749	30	2.2	30	91	0	103	50	10	9	29	1.68
65490182--65490219	19	2.0	20	89	5	60	50	18	2	28	1.61
65490187--65490228	20	2.2	19	86	4	57	47	19	4	28	1.69
65499017--65499139	9	13.0	9	69	18	63	34	2	5	57	1.35
65499080--65499130	22	2.5	22	84	9	72	35	0	7	56	1.28
65499064--65499143	40	2.1	38	83	9	99	30	0	8	61	1.26
65506403--65506468	33	2.0	33	82	11	82	46	1	1	50	1.20
65510234--65510292	10	6.0	10	75	9	50	64	1	0	33	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65510237--65510298	29	2.1	30	90	3	99	69	1	1	27	1.07
65510641--65510681	22	1.9	22	85	14	59	19	4	4	70	1.24
65510635--65510721	33	2.6	34	82	10	92	20	3	3	72	1.14
65510651--65510703	18	3.2	16	75	12	54	20	3	3	71	1.17
65513670--65513767	42	2.3	42	94	0	169	46	15	13	24	1.81
65515986--65516242	128	2.0	128	99	0	505	32	15	18	33	1.92
65524605--65524709	50	2.1	51	98	1	203	19	9	27	43	1.81
65533440--65533468	14	2.0	15	93	6	51	79	6	13	0	0.93
65551961--65552093	67	2.0	67	98	0	257	35	3	5	56	1.37
65561351--65561379	2	14.5	2	100	0	58	48	51	0	0	1.00
65566700--65566801	50	2.0	51	90	3	161	29	7	17	45	1.77
65566777--65566905	54	2.5	50	82	7	150	20	7	10	60	1.54
65566777--65566877	50	2.0	50	88	0	148	18	9	9	61	1.55
65570473--65570541	16	4.2	16	96	3	129	26	0	36	37	1.57
65570473--65570541	33	2.1	32	97	2	129	26	0	36	37	1.57
65570777--65570813	19	2.0	19	85	15	51	54	0	0	45	1.00
65570807--65570994	61	3.1	58	68	19	143	48	5	2	43	1.41
65570855--65571040	59	3.1	58	70	19	166	51	3	2	43	1.32
65570757--65571046	120	2.4	120	88	3	447	49	4	2	44	1.34
65582607--65582636	10	2.9	10	95	5	51	86	0	13	0	0.57
65598790--65599233	150	3.0	150	95	2	787	20	16	19	43	1.88
65608257--65608407	78	1.9	78	91	0	248	27	21	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65611480--65611505	9	2.9	9	100	0	52	0	11	11	76	1.01
65617270--65617312	17	2.4	17	80	11	50	16	0	48	34	1.46
65618577--65618622	17	2.8	18	84	15	64	28	41	30	0	1.56
65620044--65620135	29	3.2	29	87	0	130	34	3	7	54	1.45
65621121--65621155	16	2.2	16	90	10	54	51	2	17	28	1.59
65625163--65625200	17	2.1	18	85	9	51	10	2	10	76	1.12
65626013--65626064	25	2.0	25	88	3	77	69	0	0	30	0.89
65626034--65626069	18	1.9	19	94	5	65	66	0	0	33	0.92
65626034--65626070	17	2.1	19	90	10	60	67	0	0	32	0.91
65629077--65629110	6	5.7	6	92	0	50	0	11	14	73	1.10
65631733--65631772	20	2.0	20	90	9	64	65	0	2	32	1.06
65633339--65634612	365	3.5	365	97	0	2314	24	19	19	37	1.94
65634608--65635133	231	2.3	229	87	3	727	23	15	14	46	1.82
65637507--65638039	267	2.0	265	95	0	967	25	14	19	39	1.90
65641638--65641760	61	2.0	61	98	0	237	36	13	23	26	1.91
65642374--65642422	13	3.8	13	77	0	53	32	6	26	34	1.81
65652129--65652153	6	4.2	6	100	0	50	16	0	0	84	0.63
65658807--65658885	38	2.0	39	82	7	97	32	2	0	64	1.07
65658818--65658936	30	3.9	29	83	11	141	36	2	0	61	1.10
65658818--65658904	17	5.6	17	67	20	73	35	2	0	62	1.08
65658828--65658907	41	2.0	41	82	9	101	37	2	0	60	1.11
65658896--65658943	22	2.2	20	76	16	51	33	2	4	60	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65659153--65659185	14	2.3	15	89	5	50	48	21	0	30	1.50
65659554--65659593	8	5.2	8	85	11	57	50	35	0	15	1.44
65659552--65659594	7	5.9	7	89	5	59	46	37	0	16	1.47
65659552--65659593	15	2.8	15	85	0	57	47	35	0	16	1.47
65659983--65660096	9	11.9	9	68	20	63	63	2	1	32	1.19
65660028--65660079	19	2.7	19	87	0	59	65	3	1	28	1.21
65662555--65662599	7	6.3	7	92	5	72	42	44	0	13	1.43
65662555--65662624	22	3.2	20	81	16	70	42	45	0	11	1.40
65672190--65672252	27	2.2	29	77	5	67	50	28	9	11	1.69
65676421--65676468	25	1.9	25	83	8	62	54	0	0	45	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218