genome.fa.s23.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  154  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46757949--46757995	4	12.0	4	78	13	53	74	0	2	23	0.93
46757949--46757998	18	2.6	19	81	18	59	74	0	2	24	0.93
46758130--46758176	18	2.6	17	78	15	51	59	2	4	34	1.29
46758313--46758361	12	4.2	12	72	17	50	69	0	0	30	0.89
46759063--46759503	83	5.3	83	77	9	401	28	21	19	30	1.98
46759132--46759332	44	4.7	44	73	13	184	27	22	19	30	1.98
46759063--46759415	127	2.8	127	92	0	580	28	21	20	30	1.98
46771566--46771626	4	15.2	4	73	13	54	70	0	1	27	0.97
46771566--46771615	18	2.5	20	81	18	61	74	0	2	24	0.93
46771750--46771796	18	2.6	17	78	15	51	59	2	4	34	1.29
46775978--46776012	14	2.5	14	90	0	52	14	5	8	71	1.29
46777638--46777714	31	2.5	30	83	8	84	38	3	3	53	1.38
46783245--46783279	13	2.7	13	87	12	54	80	2	0	17	0.84
46783245--46783286	14	3.2	13	80	12	50	80	2	0	16	0.81
46789454--46789487	2	17.0	2	87	0	50	47	2	0	50	1.16
46797124--46797399	139	2.0	138	80	5	306	39	12	11	36	1.79
46803790--46803838	3	16.3	3	95	0	89	65	0	2	32	1.04
46804861--46804915	22	2.4	23	76	11	60	61	0	1	36	1.06
46805862--46805907	12	3.8	12	97	2	83	26	17	15	41	1.88
46809991--46810044	28	1.9	28	88	0	81	29	33	0	37	1.58
46821223--46821345	55	2.2	56	88	2	176	26	12	28	33	1.92
46821223--46821345	28	4.4	28	90	2	176	26	12	28	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46821248--46821358	28	4.0	27	90	3	116	28	11	26	33	1.91
46829414--46829536	29	4.4	27	81	11	99	26	12	29	32	1.92
46829414--46829536	28	4.4	28	86	6	160	26	12	29	32	1.92
46829439--46829549	28	4.0	27	83	8	109	28	11	27	32	1.92
46839065--46839136	28	2.5	29	88	4	110	34	23	4	37	1.74
46839350--46839424	29	2.6	29	91	0	114	12	18	26	42	1.85
46839823--46839856	14	2.4	14	90	0	50	38	8	20	32	1.84
46839915--46839952	18	2.1	18	95	0	67	47	7	10	34	1.67
46840031--46840090	17	3.3	18	81	6	68	51	3	1	43	1.28
46842430--46842470	15	2.5	17	81	18	52	43	4	17	34	1.70
46843587--46843679	30	3.2	30	84	3	118	30	15	20	34	1.93
46846464--46846516	27	2.0	26	85	7	72	43	11	1	43	1.51
46847485--46847518	15	2.3	15	95	5	61	76	5	17	0	0.98
46854546--46854588	17	2.5	17	84	0	50	16	37	27	18	1.92
46866517--46866587	36	1.9	38	83	11	94	30	5	1	61	1.27
46866553--46866586	17	2.1	16	88	5	50	29	2	0	67	1.05
46866730--46866953	88	2.5	89	82	6	274	34	8	18	37	1.82
46867734--46867798	9	7.1	9	73	22	55	3	23	1	72	1.07
46867746--46867799	16	3.2	16	80	12	56	3	25	0	70	1.04
46869856--46869977	23	5.3	23	90	3	192	29	27	21	22	1.99
46869856--46869976	46	2.6	46	96	0	215	29	27	21	21	1.98
46871299--46871387	42	2.1	42	87	4	126	24	22	35	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46880091--46880143	25	2.1	25	89	0	79	32	11	15	41	1.82
46889896--46889920	12	2.1	12	100	0	50	40	0	8	52	1.31
46893695--46893768	18	3.9	18	69	22	53	47	2	1	48	1.24
46893693--46893768	20	3.9	20	71	10	68	47	2	1	48	1.24
46898026--46898076	25	2.0	25	92	0	84	52	3	35	7	1.49
46898773--46898856	3	28.0	3	83	0	96	32	5	2	59	1.34
46898782--46898853	27	2.7	27	91	0	117	33	6	1	58	1.33
46905208--46905246	19	2.1	19	85	0	51	43	0	28	28	1.55
46906755--46906801	21	2.2	22	92	3	78	21	38	19	21	1.94
46911566--46911613	15	3.0	16	77	16	55	56	2	4	37	1.30
46912440--46912473	16	2.1	16	88	0	50	41	2	20	35	1.68
46914989--46915113	20	6.2	20	85	0	151	8	30	20	40	1.82
46914992--46915110	40	3.0	40	89	0	175	8	31	19	41	1.81
46927638--46928354	89	8.1	89	88	0	990	28	22	15	33	1.95
46936405--46936444	20	2.0	20	85	0	53	32	10	22	35	1.87
46943226--46943299	39	1.9	40	83	8	100	50	1	6	41	1.37
46950820--46950899	37	2.1	38	88	2	126	52	6	22	18	1.68
46952205--46952253	25	2.0	25	88	8	73	46	26	10	16	1.78
46971689--46971887	86	2.3	87	86	3	274	37	23	9	30	1.86
46971916--46971964	19	2.6	19	78	12	57	63	0	2	34	1.06
46971964--46971999	17	2.1	17	94	0	63	52	5	0	41	1.24
46971964--46972021	22	3.0	20	82	12	59	53	5	0	41	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46972192--46972280	47	1.9	46	86	6	126	29	6	3	60	1.38
46972247--46972290	19	2.3	19	84	11	54	20	6	2	70	1.21
46973336--46973385	23	2.2	23	85	0	64	14	6	2	78	1.03
46973980--46974021	19	2.2	19	83	8	50	23	2	7	66	1.28
46990589--46990624	17	2.1	18	89	5	56	50	5	0	44	1.25
46994178--46994204	11	2.5	11	100	0	54	29	7	14	48	1.71
46993740--46994622	440	2.0	440	93	0	1496	30	10	15	43	1.80
47000332--47000732	123	3.3	123	93	0	678	29	15	20	33	1.94
47003461--47003525	32	2.0	32	100	0	130	46	9	21	23	1.80
47003960--47004522	29	19.7	29	86	9	729	29	0	23	47	1.52
47003954--47004522	88	6.6	88	85	8	780	29	0	23	47	1.54
47004160--47004214	23	2.4	21	100	0	74	27	0	25	47	1.52
47003960--47004517	169	3.3	168	86	11	712	29	0	23	47	1.52
47006831--47006890	30	2.0	30	93	3	102	66	0	0	33	0.92
47006925--47006975	22	2.3	21	90	9	84	35	0	35	29	1.58
47006947--47007004	30	1.9	30	100	0	116	34	0	36	29	1.58
47018377--47018646	28	9.7	28	77	10	232	25	22	12	38	1.90
47018400--47018646	56	4.4	56	79	9	272	25	21	12	40	1.88
47018382--47018646	84	3.2	84	80	6	306	25	22	12	39	1.89
47021888--47021925	18	2.1	19	95	5	69	21	13	28	36	1.91
47023841--47026575	547	5.0	547	99	0	5411	39	25	11	24	1.88
47028970--47029010	15	2.7	15	85	10	57	41	4	0	53	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47028970--47029014	16	2.9	16	87	9	58	42	6	0	51	1.28
47029289--47029383	44	2.2	44	86	0	127	28	28	18	24	1.98
47030461--47030491	16	1.9	16	100	0	62	38	12	12	35	1.82
47030571--47030711	69	2.0	69	100	0	282	44	20	12	21	1.85
47032669--47032694	8	3.2	8	100	0	52	65	11	11	11	1.48
47033245--47033478	41	5.7	41	85	3	319	32	26	18	22	1.97
47033245--47033474	123	1.9	123	88	1	354	32	25	18	23	1.97
47033245--47033478	82	2.9	82	88	1	362	32	26	18	22	1.97
47033523--47033657	39	3.4	38	74	6	117	22	20	18	38	1.93
47037541--47037623	41	2.0	41	97	0	157	32	21	22	22	1.98
47059536--47059583	23	2.1	23	84	7	62	39	20	10	29	1.86
47062201--47062231	15	2.1	15	93	0	53	19	29	12	38	1.89
47066432--47066488	27	2.1	27	83	9	71	21	8	14	56	1.65
47085695--47085736	19	2.3	18	92	8	75	26	0	4	69	1.08
47088347--47088407	24	2.7	23	80	14	65	32	0	42	24	1.55
47088965--47089239	27	10.2	27	88	0	361	40	22	18	18	1.91
47096845--47096879	17	2.1	17	89	5	54	45	0	0	54	0.99
47097047--47097170	66	1.9	66	88	3	187	23	20	19	36	1.95
47097259--47097319	11	5.5	11	78	0	68	21	34	1	42	1.63
47097437--47097493	22	2.8	20	71	10	51	21	31	1	45	1.62
47097437--47097482	11	4.2	11	88	0	56	21	32	0	45	1.52
47097273--47097590	164	1.9	164	90	3	507	25	16	5	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47104036--47104074	18	2.0	20	90	9	64	46	5	0	48	1.24
47104085--47104130	23	2.2	20	84	11	56	71	4	2	21	1.14
47104133--47104158	7	3.7	7	100	0	52	61	0	11	26	1.30
47110905--47110951	21	2.2	22	92	3	78	21	38	19	21	1.94
47116135--47116192	29	2.0	30	82	3	73	44	1	5	48	1.35
47122491--47122574	43	2.0	43	90	0	132	35	25	9	29	1.87
47123667--47123707	8	4.8	8	85	14	55	24	2	0	73	0.96
47123667--47123719	9	5.8	9	79	18	56	26	1	0	71	0.96
47123666--47123707	18	2.4	17	88	4	66	26	2	0	71	0.98
47123667--47123719	19	2.8	17	76	18	52	26	1	0	71	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218