genome.fa.s23.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  158  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48131670--48132193	252	2.1	252	85	3	709	30	16	15	37	1.90
48132279--48132350	34	2.3	31	90	9	110	45	11	0	43	1.39
48132274--48132364	34	2.9	31	80	15	98	45	15	0	39	1.46
48132400--48132440	8	5.1	8	87	0	55	56	31	0	12	1.36
48136019--48136115	19	4.7	21	76	15	87	36	8	16	39	1.79
48136019--48136089	19	3.6	19	85	7	97	36	9	14	39	1.79
48141704--48141736	14	2.3	15	89	5	50	27	12	33	27	1.92
48141798--48141824	12	2.2	12	100	0	54	92	0	7	0	0.38
48143036--48143726	88	7.9	88	90	0	961	26	23	26	23	2.00
48143729--48143982	44	5.8	44	84	2	260	31	15	22	30	1.95
48143036--48143855	264	3.1	264	83	1	741	26	22	25	25	2.00
48143774--48143938	89	1.9	89	85	5	235	32	15	22	30	1.94
48143730--48144010	133	2.1	133	89	0	427	31	15	23	28	1.95
48144355--48144429	19	3.6	21	81	15	84	34	9	17	38	1.82
48152319--48152387	25	2.8	25	86	8	88	20	30	17	31	1.95
48158896--48158963	34	2.0	34	85	5	93	20	26	23	29	1.99
48162500--48162629	25	5.2	25	77	6	104	20	24	22	33	1.97
48163717--48163830	55	2.1	55	81	3	131	22	28	25	23	2.00
48172449--48172533	9	9.4	9	88	0	116	47	20	7	25	1.75
48172541--48172603	17	3.5	17	69	12	54	49	12	3	34	1.57
48172532--48172606	37	2.0	37	94	0	132	45	14	4	36	1.64
48172733--48172849	39	3.0	39	93	1	200	19	2	27	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48172830--48172884	13	3.9	13	73	17	56	16	0	45	38	1.47
48175050--48175388	125	2.7	126	91	0	527	32	14	19	33	1.92
48176969--48177107	56	2.5	55	77	13	149	45	7	10	36	1.67
48177077--48177133	26	2.2	26	96	0	105	57	7	7	28	1.51
48177131--48177828	85	8.1	84	89	3	941	25	0	23	50	1.52
48177131--48177835	57	12.3	57	90	3	1010	25	0	24	50	1.52
48177131--48177828	28	24.4	28	88	4	964	25	0	23	50	1.52
48178051--48178106	24	2.3	24	93	0	94	1	21	32	44	1.63
48178361--48178406	18	2.6	18	82	0	56	39	8	30	21	1.84
48179050--48179074	7	3.6	7	100	0	50	60	12	0	28	1.32
48180140--48180204	31	2.1	31	88	5	96	64	0	0	35	0.94
48180250--48180300	22	2.3	22	100	0	102	39	0	33	27	1.57
48182138--48182172	3	11.7	3	93	0	61	65	0	2	31	1.07
48182355--48182394	17	2.3	18	95	4	73	25	7	0	67	1.16
48182356--48182396	9	4.9	8	82	11	55	26	9	0	63	1.25
48182356--48182409	16	3.2	16	86	5	54	25	9	0	64	1.23
48183634--48183677	20	2.2	20	88	8	63	27	2	4	65	1.23
48183674--48183713	19	2.0	20	90	4	64	27	0	5	67	1.11
48186625--48186673	17	2.6	19	75	18	57	38	20	14	26	1.91
48192283--48192426	42	3.4	42	89	2	209	27	15	27	29	1.96
48192290--48192464	84	2.1	84	78	13	182	30	14	25	29	1.95
48193499--48193550	25	2.1	25	82	13	63	23	1	26	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48197870--48197930	30	2.0	30	100	0	122	47	26	3	22	1.67
48197867--48197937	30	2.5	28	88	8	115	45	26	2	25	1.67
48200533--48200760	9	24.6	9	63	18	60	60	3	2	32	1.27
48203132--48203179	11	4.3	11	76	5	51	64	4	0	31	1.12
48203382--48203756	187	2.0	187	97	0	705	31	19	5	43	1.74
48204325--48204352	11	2.5	11	100	0	56	25	0	0	75	0.81
48204469--48204543	27	2.8	28	78	15	77	30	2	2	64	1.21
48204478--48204519	18	2.4	18	84	4	59	35	0	4	59	1.19
48204524--48204582	18	3.2	17	80	17	64	22	5	0	72	1.03
48209196--48209231	18	2.0	18	100	0	72	27	27	5	38	1.79
48210917--48210973	20	3.0	18	82	10	69	45	0	29	24	1.53
48210930--48210984	27	2.0	27	86	6	76	45	0	27	27	1.54
48210921--48210983	19	3.3	20	79	14	71	44	0	28	26	1.55
48211420--48211459	18	2.2	18	100	0	80	12	5	42	40	1.64
48211478--48211537	23	2.6	23	97	0	111	20	5	25	50	1.68
48213471--48213794	87	3.7	86	85	4	463	24	22	23	29	1.99
48213448--48213794	172	2.0	173	88	5	515	23	23	23	29	1.99
48215040--48215084	7	6.7	7	87	7	67	11	15	0	73	1.10
48215040--48215084	20	2.2	20	92	7	74	11	15	0	73	1.10
48215040--48215084	13	3.4	13	84	6	63	11	15	0	73	1.10
48215031--48215091	20	2.9	21	78	11	72	9	14	0	75	1.04
48221196--48221243	25	2.0	24	87	4	69	70	10	6	12	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48222620--48222748	52	2.5	51	88	3	179	28	14	30	26	1.95
48224901--48224935	16	2.2	16	90	5	54	54	0	31	14	1.40
48225026--48225070	6	7.2	6	90	9	72	64	0	15	20	1.29
48225289--48225839	271	2.0	272	88	1	820	38	16	15	30	1.89
48229655--48229733	40	2.0	41	85	7	108	39	18	17	24	1.92
48229666--48229761	40	2.4	40	81	5	115	37	18	19	23	1.94
48229829--48230107	41	6.8	41	85	1	362	23	21	23	31	1.98
48231414--48231473	10	5.8	10	75	11	50	46	0	5	48	1.24
48231411--48231473	20	3.1	20	73	11	65	49	0	4	46	1.23
48231899--48231937	19	2.1	19	100	0	78	43	10	20	25	1.83
48233676--48233710	16	2.2	16	94	0	61	14	11	14	60	1.60
48235070--48235236	43	3.9	44	77	6	148	26	17	25	30	1.97
48235241--48235434	43	4.5	43	83	1	228	25	16	31	26	1.96
48235136--48235348	112	1.9	112	84	1	284	29	17	27	25	1.97
48235095--48235391	155	1.9	155	83	4	384	27	17	27	27	1.97
48235241--48235434	86	2.3	86	90	0	298	25	16	31	26	1.96
48240842--48241022	45	4.1	45	87	1	222	33	26	18	21	1.97
48246555--48246579	6	4.2	6	100	0	50	84	0	16	0	0.63
48247073--48247116	23	2.0	22	90	4	70	65	4	0	29	1.12
48254750--48254819	9	7.6	9	71	16	54	74	1	5	18	1.09
48254769--48254818	19	2.8	18	85	8	66	72	2	6	20	1.16
48255736--48255943	94	2.2	94	85	0	281	23	30	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48264246--48264293	24	2.0	24	95	0	87	20	10	18	50	1.76
48273468--48273504	18	2.0	19	94	5	67	37	5	21	35	1.77
48274063--48274653	69	8.7	69	87	2	824	25	10	20	43	1.84
48281054--48281093	13	3.1	13	92	0	62	25	2	0	72	0.97
48281131--48281191	3	20.7	3	81	3	70	26	3	0	70	1.02
48290301--48290343	22	1.9	23	85	4	61	65	2	2	30	1.18
48292558--48292592	18	1.9	18	88	0	52	45	5	5	42	1.51
48294076--48294133	29	1.9	31	86	13	86	50	1	3	44	1.29
48295447--48295498	27	1.9	27	88	0	77	25	30	25	19	1.98
48295641--48295924	115	2.6	105	76	13	286	26	2	14	56	1.49
48298636--48298691	20	2.5	23	75	24	66	66	10	0	23	1.23
48298639--48298677	20	2.0	20	100	0	78	61	10	0	28	1.28
48298630--48298858	113	2.1	113	82	5	290	60	12	0	25	1.38
48298664--48298984	102	3.1	102	73	18	282	59	13	0	26	1.41
48298852--48299053	109	1.9	109	83	10	270	62	14	0	22	1.35
48299044--48299111	27	2.5	26	86	9	84	55	17	0	26	1.42
48307369--48307441	36	2.0	36	97	0	137	16	16	26	41	1.89
48322209--48322406	29	6.8	29	75	4	139	37	12	22	27	1.90
48322191--48322319	29	4.4	29	80	1	132	37	11	21	29	1.89
48322307--48322448	29	4.9	29	73	10	110	37	15	24	22	1.93
48322243--48322450	87	2.4	87	84	6	251	37	14	24	24	1.92
48322441--48322510	30	2.3	30	82	0	86	32	12	20	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48329180--48329818	318	2.0	317	98	0	1242	45	14	13	26	1.83
48331835--48331873	14	2.8	14	84	0	51	41	5	17	35	1.72
48332347--48332398	19	2.6	20	81	6	52	46	0	1	51	1.12
48332466--48332507	20	2.0	22	86	9	61	54	0	0	45	0.99
48333743--48333848	42	2.5	42	90	1	160	17	36	22	22	1.95
48333780--48334008	104	2.2	104	92	3	381	24	30	21	23	1.99
48335360--48335411	8	6.0	9	82	13	65	1	42	1	53	1.23
48339134--48339575	114	3.9	114	87	3	597	26	19	26	27	1.99
48339134--48339575	227	1.9	228	86	5	626	26	19	26	27	1.99
48339503--48339647	73	2.0	72	89	4	220	26	22	23	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218