genome.fa.s23.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  131  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40070859--40070898	20	2.1	19	90	4	62	45	0	7	47	1.31
40071081--40071119	14	2.8	14	84	0	51	71	0	2	25	0.98
40088332--40088414	34	2.5	33	87	11	118	25	22	22	28	1.99
40088671--40088723	27	2.0	27	82	7	65	45	15	9	30	1.77
40094909--40095090	29	6.3	29	77	5	154	38	18	17	26	1.92
40094909--40095087	58	3.1	58	77	1	180	39	17	17	25	1.92
40095023--40095189	29	5.8	29	76	5	126	37	21	14	25	1.92
40095107--40095212	29	3.6	28	80	9	106	34	21	16	27	1.94
40095079--40095235	58	2.7	58	76	4	138	35	22	16	25	1.95
40095148--40095229	29	2.8	29	78	10	87	39	17	15	28	1.90
40095215--40095270	26	2.2	26	80	6	60	35	23	19	21	1.96
40095727--40095760	17	2.0	17	88	0	50	29	0	38	32	1.58
40103438--40103522	38	2.2	38	83	4	100	37	5	8	48	1.58
40110518--40110637	60	2.0	60	93	0	204	24	12	15	48	1.79
40124965--40125026	26	2.4	26	84	10	90	38	11	11	38	1.77
40137618--40137671	26	2.1	25	86	3	72	42	18	11	27	1.84
40138938--40138976	3	13.0	3	100	0	78	33	0	0	66	0.92
40143398--40143422	13	1.9	13	100	0	50	32	16	8	44	1.76
40155094--40155192	30	3.3	30	86	8	130	38	15	28	18	1.91
40155149--40155215	30	2.2	31	84	5	84	37	13	20	28	1.91
40167111--40167154	21	2.1	21	100	0	88	40	40	4	13	1.65
40167239--40167306	35	1.9	35	87	0	100	33	39	10	16	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40167269--40167336	29	2.4	28	82	2	82	33	36	10	19	1.85
40171826--40171925	42	2.4	42	79	3	121	20	27	28	25	1.99
40175777--40175831	22	2.5	22	90	0	83	40	25	21	12	1.89
40175796--40175844	22	2.2	22	82	7	55	40	20	24	14	1.89
40176348--40176396	19	2.5	20	86	3	73	24	12	0	63	1.29
40187729--40187781	25	2.1	26	82	3	63	58	7	1	32	1.37
40189327--40189380	24	2.2	24	100	0	108	31	24	9	35	1.87
40189327--40189380	11	4.5	12	77	15	58	31	24	9	35	1.87
40190350--40190556	48	4.3	48	84	3	236	23	26	20	29	1.99
40192032--40192081	25	2.0	25	92	0	82	38	2	24	36	1.67
40194820--40194853	14	2.5	14	90	4	52	79	0	2	17	0.86
40199789--40199936	65	2.3	64	84	7	201	22	26	10	41	1.85
40200652--40200701	24	2.1	24	84	0	64	26	22	16	36	1.94
40201238--40201315	38	2.1	38	82	0	93	41	20	5	33	1.74
40205878--40205921	20	2.2	20	84	8	54	27	0	6	65	1.17
40205907--40205944	16	2.4	16	86	8	51	31	2	0	65	1.06
40210595--40210682	32	2.6	35	76	8	110	75	5	12	6	1.19
40210594--40210677	33	2.5	32	82	5	96	75	5	11	7	1.19
40221949--40222007	27	2.2	27	87	0	82	13	13	32	40	1.84
40222078--40222192	48	2.4	48	83	0	149	20	9	29	40	1.84
40233245--40233346	51	2.0	51	96	0	186	48	10	7	33	1.67
40234677--40234714	17	2.2	18	86	13	53	65	5	18	10	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40241966--40242007	18	2.4	18	84	4	59	21	9	0	69	1.17
40256521--40256615	37	2.6	37	81	6	120	13	11	31	43	1.80
40265439--40265554	61	1.9	61	89	0	178	33	2	11	52	1.51
40268558--40268583	13	2.0	13	100	0	52	30	7	23	38	1.83
40269690--40269815	43	2.9	42	78	14	132	22	18	27	31	1.97
40270793--40270957	23	7.2	23	86	0	222	26	10	20	42	1.85
40273172--40273230	20	3.0	20	73	11	50	20	6	3	69	1.26
40275751--40275807	24	2.4	24	90	0	87	17	17	31	33	1.93
40275487--40276080	171	3.4	170	90	4	872	17	22	27	32	1.97
40275919--40275978	24	2.5	24	86	7	86	16	18	33	31	1.93
40276121--40276179	24	2.5	24	85	0	82	16	20	32	30	1.95
40278230--40278266	16	2.3	17	81	13	51	59	0	2	37	1.12
40283370--40283495	28	4.5	28	96	1	227	26	13	28	31	1.94
40291628--40291802	28	6.4	28	88	7	146	25	13	28	32	1.94
40291653--40291802	28	5.5	28	90	7	238	25	14	28	32	1.94
40291653--40291802	52	2.8	53	87	9	214	25	14	28	32	1.94
40295605--40295643	14	2.7	15	84	11	55	30	17	10	41	1.83
40296782--40297085	43	7.1	43	81	4	285	28	26	16	27	1.97
40296780--40297085	128	2.4	128	82	3	366	28	27	16	27	1.97
40296779--40297081	86	3.5	85	83	3	360	28	27	16	27	1.97
40297358--40297448	43	2.1	43	84	6	114	45	9	10	34	1.73
40300708--40300757	21	2.4	21	80	12	59	38	36	0	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40301296--40301337	15	2.7	16	82	14	52	52	2	0	45	1.13
40301305--40301346	15	2.9	15	82	10	52	52	0	0	47	1.00
40301390--40301456	15	4.7	14	73	19	50	59	1	0	38	1.06
40301399--40301459	26	2.4	25	83	8	79	60	1	0	37	1.07
40301589--40301647	29	2.1	28	87	6	84	49	5	10	35	1.59
40301675--40301712	16	2.3	17	90	4	60	57	5	2	34	1.35
40304818--40304843	5	5.2	5	100	0	52	80	0	19	0	0.71
40306083--40306513	114	3.8	113	90	3	627	29	20	22	27	1.98
40306410--40306571	72	2.3	71	86	6	211	28	17	23	30	1.97
40306296--40306686	186	2.1	187	87	3	567	27	19	23	29	1.98
40306483--40306817	114	2.9	114	88	2	469	29	20	22	27	1.98
40306183--40306889	300	2.4	300	87	3	1059	28	20	22	28	1.98
40306710--40306939	72	3.2	71	87	3	325	27	18	23	30	1.98
40308384--40308592	43	4.9	43	80	4	235	29	31	18	21	1.96
40308403--40308579	85	2.1	85	87	5	250	27	33	18	20	1.96
40314470--40314651	9	21.3	9	67	14	84	34	3	18	43	1.66
40314498--40314579	25	3.3	25	83	6	103	35	2	14	47	1.58
40314535--40314683	34	4.3	34	76	4	138	32	4	20	42	1.73
40314535--40314689	69	2.2	69	88	0	220	31	5	20	42	1.74
40315133--40315277	9	16.7	9	67	14	72	33	4	19	43	1.70
40315137--40315223	16	5.6	16	67	17	58	33	3	17	45	1.65
40315093--40315309	34	6.3	34	72	11	122	34	3	18	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40315095--40315174	43	1.9	43	85	7	112	38	0	12	48	1.41
40315161--40315315	69	2.2	69	88	0	220	31	5	20	42	1.74
40314066--40315939	626	3.0	624	98	0	3581	33	14	16	34	1.90
40315719--40316288	9	66.3	9	66	19	204	32	2	20	45	1.64
40315785--40316054	69	3.9	69	94	0	432	30	3	22	43	1.70
40315801--40316055	34	7.4	34	75	9	221	30	3	22	43	1.71
40316087--40316223	34	3.8	34	66	16	87	30	2	18	48	1.60
40315719--40316288	25	22.5	26	65	19	130	32	2	20	45	1.64
40316296--40316346	21	2.4	21	87	6	68	35	3	19	41	1.70
40316342--40316387	7	6.6	7	78	16	51	28	0	10	60	1.30
40316342--40316387	15	3.3	15	79	17	62	28	0	10	60	1.30
40316270--40316466	94	2.1	94	90	3	317	32	2	16	48	1.58
40316347--40316411	30	2.3	27	84	7	76	32	0	12	55	1.37
40316384--40316440	21	2.8	20	82	10	71	36	3	15	43	1.64
40316306--40316451	33	4.6	30	68	20	75	34	2	14	48	1.58
40316657--40316761	30	3.5	30	70	17	90	50	5	4	39	1.47
40316680--40316726	15	3.1	15	90	6	76	51	6	0	42	1.27
40316680--40316725	16	2.9	16	93	3	76	50	6	0	43	1.28
40316609--40316756	61	2.4	61	85	0	206	48	4	4	42	1.43
40316675--40316767	17	5.9	17	79	14	74	50	5	4	39	1.45
40316718--40316774	30	1.9	30	92	0	96	56	3	7	33	1.43
40317664--40317704	15	2.6	16	84	11	57	51	9	0	39	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40317670--40317704	15	2.2	16	95	5	63	51	11	0	37	1.38
40325801--40325847	20	2.3	20	85	0	67	21	12	36	29	1.91
40327511--40327616	48	2.2	48	85	9	137	14	24	1	59	1.45
40327592--40327716	17	7.1	17	70	15	76	13	27	2	56	1.50
40328724--40328784	29	2.1	29	85	11	81	4	14	4	75	1.14
40330302--40330348	20	2.3	20	85	0	67	21	12	36	29	1.91
40343374--40343414	17	2.4	18	80	8	50	14	24	4	56	1.58
40345655--40345695	11	3.7	11	93	0	64	9	4	4	80	1.00
40351371--40351467	30	3.2	30	72	8	99	28	16	26	27	1.97
40353725--40353774	6	8.2	6	81	16	50	2	20	2	76	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218