genome.fa.s23.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  130  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39671989--39672175	92	2.0	92	95	2	340	21	8	19	50	1.73
39673846--39673958	44	2.6	42	81	17	142	23	19	27	29	1.98
39676976--39677001	13	2.0	13	100	0	52	30	15	30	23	1.95
39677275--39677384	23	4.8	23	77	0	85	40	21	16	21	1.91
39682846--39682891	20	2.3	19	85	14	58	26	15	15	43	1.85
39682852--39682894	20	2.0	22	91	8	72	27	13	13	44	1.83
39685917--39686143	113	2.0	111	94	1	373	35	11	20	32	1.89
39686985--39687019	16	2.1	17	89	5	54	34	0	2	62	1.10
39686954--39686996	7	6.0	7	89	5	59	44	4	0	51	1.22
39686972--39687021	15	3.3	15	76	18	50	40	0	2	58	1.10
39687309--39687340	17	1.9	17	93	6	57	56	9	0	34	1.32
39687389--39687425	7	5.0	7	93	6	56	56	0	0	43	0.99
39687389--39687425	15	2.5	14	91	8	56	56	0	0	43	0.99
39688301--39688332	16	1.9	17	93	6	57	25	0	0	75	0.81
39688317--39688343	12	2.2	12	100	0	54	29	0	0	70	0.88
39688297--39688360	28	2.3	28	83	2	76	28	1	0	70	0.97
39688394--39688421	14	2.0	14	100	0	56	42	0	0	57	0.99
39691917--39692055	73	1.9	73	82	8	176	18	23	23	35	1.96
39695887--39696199	47	6.6	47	93	2	509	29	30	7	32	1.86
39695887--39696199	96	3.3	94	92	2	509	29	30	7	32	1.86
39695887--39696199	143	2.2	143	94	1	540	29	30	7	32	1.86
39708656--39708684	15	1.9	15	100	0	58	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39709746--39709874	40	3.2	40	75	6	125	22	27	17	31	1.97
39712598--39712634	19	2.0	18	94	5	65	64	2	0	32	1.07
39716970--39717017	9	5.3	9	82	9	62	31	0	2	66	1.03
39721782--39721978	98	2.0	98	94	0	349	28	9	23	38	1.86
39722990--39723020	11	2.7	12	90	10	55	45	0	0	54	0.99
39726829--39726891	29	2.1	31	88	5	94	36	11	9	42	1.73
39729072--39729099	4	7.0	4	100	0	56	75	0	0	25	0.81
39734484--39734532	25	2.0	25	83	0	62	24	20	20	34	1.96
39734494--39734554	25	2.4	25	86	0	77	22	18	24	34	1.96
39740062--39740093	16	2.0	16	93	0	55	25	15	0	59	1.36
39740430--39740461	16	2.0	16	93	0	55	43	12	9	34	1.75
39740557--39740754	51	3.9	51	76	5	188	31	28	16	23	1.96
39740197--39740676	245	2.0	245	97	0	915	34	24	16	24	1.95
39740564--39740748	101	1.8	102	87	3	275	31	27	17	23	1.97
39744787--39744857	25	2.8	25	86	0	88	21	25	22	30	1.98
39744798--39744872	25	3.0	25	88	0	96	22	22	24	30	1.99
39754178--39754215	19	2.0	19	89	0	58	52	5	10	31	1.58
39754975--39755273	31	9.7	31	87	1	388	28	9	18	44	1.80
39754964--39755273	92	3.4	92	88	2	408	28	8	18	44	1.79
39754975--39755273	123	2.4	123	87	2	422	28	9	18	44	1.80
39762662--39762761	47	2.1	49	84	3	132	25	31	18	26	1.97
39769659--39769974	35	8.7	34	68	20	160	23	16	16	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39769694--39769849	78	2.0	78	92	0	258	23	14	16	46	1.83
39769672--39770006	106	3.1	106	77	14	253	24	14	15	45	1.84
39770995--39771033	20	2.0	20	85	10	53	15	12	0	71	1.14
39771616--39771686	21	3.4	21	78	3	81	14	30	26	28	1.95
39773125--39773168	16	2.5	18	89	10	65	40	0	0	59	0.98
39783574--39785005	359	4.0	359	98	0	2747	28	26	15	29	1.96
39789545--39789600	28	2.0	28	100	0	112	35	17	32	14	1.90
39790256--39790290	16	2.1	17	89	5	54	74	11	0	14	1.08
39799225--39799300	24	3.0	24	67	20	57	46	2	6	44	1.43
39805361--39805402	17	2.5	16	82	17	50	28	0	2	69	1.01
39809466--39809582	49	2.4	49	77	0	117	25	19	23	30	1.98
39810503--39810599	44	2.2	44	85	10	126	31	5	24	38	1.78
39810689--39810824	58	2.4	58	82	3	168	54	2	1	41	1.24
39814806--39814872	20	3.3	20	80	0	62	11	29	20	37	1.89
39825324--39825349	13	2.0	13	100	0	52	69	7	0	23	1.14
39828976--39829033	30	1.9	30	89	0	89	41	1	6	50	1.39
39829599--39829625	3	9.0	3	100	0	54	66	0	0	33	0.92
39830300--39830344	19	2.5	17	82	10	63	46	2	2	48	1.26
39830302--39830341	18	2.2	18	90	4	62	45	2	2	50	1.28
39831208--39831243	15	2.2	16	90	9	56	50	0	0	50	1.00
39836771--39836824	27	2.0	27	96	0	99	44	7	24	24	1.79
39841422--39841492	32	2.3	31	85	7	90	21	21	40	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39841886--39841923	16	2.5	15	91	8	60	21	0	50	28	1.49
39846045--39846069	2	12.5	2	100	0	50	52	0	0	48	1.00
39867558--39868194	31	20.6	30	72	10	336	42	20	9	27	1.83
39867634--39867994	157	2.3	157	91	1	577	43	20	8	27	1.80
39867838--39868263	184	2.3	184	90	2	685	42	20	9	27	1.83
39872655--39872679	12	2.1	12	100	0	50	32	8	16	44	1.76
39873761--39873835	33	2.2	34	85	2	98	42	12	6	38	1.68
39877798--39877822	12	2.1	12	100	0	50	32	8	16	44	1.76
39881824--39882228	31	13.2	31	69	8	146	41	18	10	28	1.84
39881821--39882125	154	2.0	154	90	1	477	42	18	10	28	1.83
39881821--39882193	154	2.4	154	85	2	455	42	19	10	27	1.84
39881963--39882302	62	5.5	60	73	8	211	42	19	9	28	1.82
39884923--39885045	29	4.3	28	76	7	97	25	14	21	38	1.92
39885524--39885581	30	1.9	31	82	3	73	1	24	1	72	1.03
39885547--39885573	11	2.5	11	100	0	54	0	25	0	74	0.83
39885538--39885575	10	3.8	10	83	10	51	0	23	0	76	0.79
39888691--39888759	34	2.0	34	97	0	129	31	13	40	14	1.84
39890208--39890282	23	3.3	21	73	15	69	42	17	13	26	1.86
39892481--39892630	45	3.4	44	83	8	157	40	18	20	22	1.92
39894454--39894499	21	2.3	20	78	14	51	45	17	6	30	1.73
39907930--39908151	50	4.3	50	80	3	201	22	30	20	26	1.99
39907930--39908151	100	2.2	103	81	4	243	22	30	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39910593--39910636	22	2.0	22	82	8	54	36	20	9	34	1.84
39912130--39912213	29	2.9	29	69	0	78	44	19	10	26	1.83
39931637--39931755	25	4.6	25	77	11	107	26	26	16	30	1.97
39936437--39936498	21	2.9	21	80	2	61	66	3	1	29	1.17
39936452--39936499	20	2.3	22	79	13	57	68	2	2	27	1.11
39942145--39942171	11	2.5	11	100	0	54	55	0	0	44	0.99
39944873--39944943	34	2.2	32	90	7	108	23	22	22	30	1.99
39949845--39949886	19	2.2	19	87	8	59	38	2	7	52	1.42
39949849--39949902	20	2.8	19	86	10	67	37	1	5	55	1.34
39950030--39950083	23	2.3	23	81	6	65	38	14	7	38	1.75
39956343--39956456	57	2.0	57	85	0	156	21	12	28	37	1.89
39961142--39961259	11	11.4	11	76	17	103	57	0	2	38	1.18
39961151--39961211	29	2.0	31	90	6	99	54	0	1	44	1.10
39961127--39961275	39	3.7	39	84	7	185	59	0	2	38	1.14
39969478--39969520	17	2.5	17	88	7	61	60	0	2	37	1.10
39974729--39974968	120	2.0	120	92	3	403	42	7	19	31	1.78
39979516--39979757	50	4.9	50	80	4	231	20	27	22	29	1.99
39980094--39980151	30	1.9	30	85	0	80	31	24	8	36	1.85
39985075--39985262	27	7.0	26	86	6	198	43	19	17	20	1.89
39985075--39985264	54	3.5	53	84	7	224	42	18	17	21	1.89
39985071--39985262	80	2.4	81	82	6	230	42	19	17	20	1.89
40004630--40004672	20	2.2	20	87	8	61	27	0	4	67	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40015526--40015565	18	2.1	20	90	9	66	37	2	5	55	1.35
40018871--40018968	27	3.5	28	87	2	126	27	13	27	31	1.94
40018901--40018982	27	2.9	27	85	5	83	30	12	23	34	1.91
40026768--40026865	27	3.5	28	90	2	135	26	13	28	31	1.94
40026796--40026878	27	3.0	27	87	5	96	30	12	25	32	1.92
40026768--40026879	28	4.0	27	83	6	98	28	12	25	33	1.92
40038470--40038507	20	1.9	19	89	5	58	57	0	13	28	1.36
40063302--40063332	8	4.0	8	91	8	55	25	0	51	22	1.48
40063289--40063332	23	1.9	23	86	9	63	29	0	47	22	1.51
40063302--40063332	15	2.0	16	93	6	55	25	0	51	22	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218