genome.fa.s23.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  195  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57682382--57682481	41	2.4	41	75	3	103	18	21	36	25	1.95
57682896--57682988	48	2.0	48	81	10	111	20	17	19	43	1.89
57683830--57683876	15	3.1	15	73	14	51	21	12	10	55	1.67
57684784--57684834	23	2.2	23	82	6	59	29	3	29	37	1.75
57685994--57686090	29	3.4	28	84	5	113	19	20	34	25	1.96
57685998--57686106	29	3.8	29	81	11	98	20	20	33	26	1.97
57687162--57687232	26	2.8	25	80	4	88	18	25	22	33	1.96
57691248--57691292	21	2.3	21	81	11	60	64	4	6	24	1.37
57692766--57693146	130	2.9	128	80	3	406	28	20	19	31	1.97
57693171--57694083	100	9.1	100	86	0	1061	25	21	21	31	1.98
57693174--57694076	50	18.0	50	77	2	662	25	21	21	31	1.98
57694197--57694398	44	4.6	44	67	11	117	26	25	20	27	1.99
57694089--57694408	132	2.4	131	86	1	451	27	24	19	29	1.98
57695563--57695624	6	10.7	6	73	13	58	0	22	0	77	0.77
57695564--57695614	14	3.5	15	79	15	54	0	21	0	78	0.75
57695565--57695614	20	2.5	20	84	12	75	0	22	0	78	0.76
57695557--57695625	28	2.5	27	79	11	77	0	26	0	73	0.83
57695565--57695614	17	3.1	15	88	11	64	0	22	0	78	0.76
57695563--57695626	16	3.2	20	71	26	55	0	21	0	78	0.76
57704208--57704246	5	7.6	5	82	5	51	41	0	17	41	1.50
57717218--57717248	16	1.9	16	93	0	53	58	3	3	35	1.31
57718950--57718979	11	2.6	11	94	5	51	60	0	3	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57721046--57721088	22	2.0	22	90	0	68	18	11	11	58	1.63
57723071--57723116	21	2.2	21	100	0	92	41	8	17	32	1.80
57724508--57724563	29	1.9	29	85	0	76	25	1	35	37	1.66
57725666--57725725	28	2.2	28	81	3	77	10	10	13	66	1.44
57727670--57727702	16	2.0	17	88	5	50	75	9	0	15	1.03
57732543--57732579	11	3.0	13	76	15	51	37	18	8	35	1.81
57736241--57736282	3	14.0	3	100	0	84	66	0	0	33	0.92
57736989--57737030	15	2.7	15	88	3	57	4	19	2	73	1.12
57737040--57737107	5	13.6	5	77	21	63	58	2	0	38	1.13
57739380--57739429	13	4.0	13	84	10	77	38	20	8	34	1.82
57739377--57739424	24	2.0	24	100	0	96	37	16	8	37	1.79
57740597--57740629	3	11.0	3	100	0	66	66	0	0	33	0.92
57749603--57749652	24	2.1	24	88	7	75	32	0	4	64	1.12
57749580--57749645	8	7.4	9	77	14	57	36	0	1	62	1.05
57752174--57752285	56	2.0	56	98	0	215	31	11	16	41	1.84
57752720--57752768	22	2.1	24	88	7	75	79	2	14	4	0.97
57755430--57755459	15	2.0	15	93	0	51	40	10	0	50	1.36
57758926--57758962	18	2.1	18	94	0	65	48	21	8	21	1.76
57760616--57760679	20	3.3	20	77	14	55	67	0	9	23	1.20
57760650--57760677	6	4.7	6	100	0	56	71	0	0	28	0.86
57767469--57767502	16	2.1	16	94	0	59	29	20	11	38	1.88
57772321--57772355	18	1.9	18	100	0	70	51	20	5	22	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57773133--57773205	29	2.5	29	84	4	85	45	17	16	20	1.86
57776676--57776812	65	2.2	62	82	11	154	31	8	17	43	1.78
57776927--57777207	41	6.9	41	90	3	370	19	18	27	33	1.96
57776927--57777207	122	2.3	121	86	3	366	19	18	27	33	1.96
57777875--57777909	15	2.3	15	90	9	54	25	0	22	51	1.48
57783833--57784154	163	2.0	163	86	2	450	19	18	28	33	1.96
57783833--57784154	41	7.9	41	92	2	443	19	18	28	33	1.96
57784822--57784856	15	2.3	15	90	9	54	25	0	22	51	1.48
57789087--57789134	23	2.1	23	100	0	96	41	12	18	27	1.86
57795282--57795371	36	2.5	37	80	7	94	57	0	1	41	1.06
57797832--57797889	26	2.1	27	87	6	82	62	1	3	32	1.22
57798584--57799347	114	7.0	114	82	10	850	34	15	13	35	1.87
57799533--57799578	19	2.6	18	86	6	58	41	2	0	56	1.11
57799996--57800040	23	2.0	22	82	4	54	37	0	2	60	1.09
57801384--57801529	76	1.9	76	83	5	188	30	18	21	30	1.97
57802272--57802309	19	2.0	20	84	5	51	52	2	10	34	1.50
57802519--57802570	5	10.4	5	83	8	70	38	0	19	42	1.51
57805270--57805304	19	1.9	17	88	11	52	51	0	11	37	1.38
57818030--57818055	11	2.4	11	100	0	52	26	0	0	73	0.84
57861986--57862044	31	1.9	31	86	6	84	44	5	10	40	1.60
57867934--57867988	27	2.0	27	86	6	76	12	14	0	72	1.12
57868201--57868235	17	2.1	17	94	0	61	34	5	8	51	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57869423--57869487	31	2.1	31	85	0	85	32	9	10	47	1.70
57875830--57875971	31	4.6	31	72	0	113	34	11	9	43	1.75
57875831--57875984	62	2.5	62	81	0	173	35	12	9	43	1.74
57881704--57881783	29	2.6	30	71	9	81	27	13	11	47	1.77
57892080--57892356	125	2.2	124	91	2	448	31	23	17	27	1.97
57893016--57893091	20	3.8	19	75	25	68	61	5	0	32	1.18
57893016--57893091	40	1.9	39	86	7	109	61	5	0	32	1.18
57898142--57898535	174	2.3	175	83	3	465	38	20	8	32	1.83
57901544--57901602	30	2.0	30	83	6	75	45	1	0	52	1.10
57904614--57904651	14	2.7	14	91	0	67	34	5	18	42	1.73
57904635--57904674	20	2.0	20	90	0	62	27	10	12	50	1.72
57904620--57904686	34	1.9	35	90	3	109	31	7	14	46	1.73
57904761--57904837	20	3.8	20	73	13	86	36	3	1	58	1.25
57904853--57904888	18	2.0	18	88	0	54	61	8	0	30	1.26
57907127--57907172	21	2.1	22	96	4	85	47	4	28	19	1.68
57928061--57928300	94	2.6	95	79	5	247	30	10	20	39	1.86
57931077--57931113	9	4.1	9	89	0	56	45	10	10	32	1.74
57931165--57931227	30	2.2	29	82	5	74	19	41	1	38	1.61
57939022--57939061	18	2.2	18	86	0	53	77	10	10	2	1.08
57942420--57942503	43	2.0	43	88	4	125	15	57	4	22	1.57
57946336--57946392	29	2.0	29	82	6	71	59	3	3	33	1.31
57948384--57948428	22	2.0	22	86	4	63	46	0	4	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57948395--57948451	23	2.4	24	83	13	73	52	0	0	47	1.00
57948823--57948871	15	3.3	15	78	13	57	32	16	0	51	1.45
57957848--57957905	29	2.0	30	89	3	91	37	0	8	53	1.32
57963206--57963250	20	2.2	21	84	11	58	26	2	4	66	1.22
57963735--57963853	3	39.7	3	100	0	238	67	0	32	0	0.91
57970072--57970121	15	3.3	15	82	0	64	54	0	8	38	1.30
57977454--57977490	18	2.1	18	90	5	58	54	2	5	37	1.38
57977560--57977615	20	2.8	19	78	8	58	32	0	5	62	1.18
57984364--57984449	42	2.0	42	82	4	102	16	31	24	27	1.96
57987569--57987595	2	13.5	2	100	0	54	51	0	0	48	1.00
57989595--57989678	25	3.3	26	76	14	61	58	2	5	33	1.35
57989799--57989852	3	18.3	3	77	11	58	64	1	1	31	1.14
57991189--57991969	44	17.8	44	64	14	213	28	24	18	28	1.98
57991806--57991997	44	4.4	44	67	17	114	27	25	18	28	1.98
57991144--57993791	527	5.0	528	93	1	3946	29	24	17	28	1.98
57992244--57992365	44	2.8	44	79	8	122	27	24	18	29	1.98
57991144--57993801	659	4.0	660	88	2	3974	29	24	17	28	1.97
57992675--57992760	44	2.0	44	88	0	127	27	24	16	31	1.96
57993166--57993287	44	2.8	44	81	6	131	28	23	17	30	1.97
57991144--57993801	132	20.1	132	89	2	3698	29	24	17	28	1.97
57995122--57995171	23	2.2	23	82	13	59	12	18	0	70	1.17
58000489--58000522	13	2.6	13	90	9	52	55	2	0	41	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58000627--58000672	9	4.7	10	80	19	53	71	0	2	26	0.97
58000627--58000689	6	10.7	6	78	8	58	68	1	1	28	1.08
58000629--58000697	30	2.3	30	85	12	88	69	2	1	26	1.11
58005180--58005362	95	1.9	95	93	0	312	22	3	12	61	1.46
58006983--58007012	15	2.0	15	93	0	51	50	0	10	40	1.36
58007137--58007185	25	1.9	26	84	12	66	40	6	10	42	1.63
58009164--58009188	4	6.2	4	100	0	50	76	0	0	24	0.80
58009243--58009293	25	2.1	24	85	7	68	64	1	7	25	1.31
58009241--58009304	25	2.5	25	75	14	67	65	1	6	26	1.25
58009298--58009334	19	1.9	20	88	5	58	67	0	2	29	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218