genome.fa.s23.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  150  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45726670--45726712	13	3.3	13	83	9	61	60	0	0	39	0.97
45727525--45727620	40	2.4	41	84	5	124	29	39	11	19	1.87
45727603--45727770	39	4.3	39	71	6	110	29	39	11	19	1.87
45734979--45735012	14	2.5	14	95	4	61	14	0	35	50	1.44
45735925--45735949	2	12.5	2	100	0	50	48	0	0	52	1.00
45738023--45738120	42	2.3	42	94	0	169	34	10	27	27	1.89
45743538--45743635	42	2.3	42	94	0	169	34	10	27	27	1.89
45764408--45764436	12	2.3	13	94	5	51	48	17	13	20	1.81
45764849--45765040	96	2.0	96	100	0	384	33	18	16	31	1.94
45768126--45768163	20	2.0	20	85	10	53	50	0	0	50	1.00
45771909--45771981	27	2.7	27	80	0	92	15	27	21	35	1.93
45781055--45781082	7	4.0	7	100	0	56	28	14	14	42	1.84
45781720--45781759	21	1.9	21	85	10	55	20	0	5	75	0.99
45790463--45790536	3	24.0	3	75	15	62	32	2	2	62	1.23
45802475--45802511	16	2.3	16	100	0	74	37	5	35	21	1.77
45802491--45802581	46	2.0	46	93	4	159	26	4	30	38	1.76
45802740--45802778	17	2.5	15	84	15	60	61	0	0	38	0.96
45802745--45802778	17	2.0	17	100	0	68	58	0	0	41	0.98
45802811--45802850	20	2.0	21	85	5	55	60	5	0	35	1.19
45802862--45802895	17	2.0	17	94	0	59	55	2	0	41	1.15
45802871--45802923	23	2.4	22	81	12	63	58	5	0	35	1.22
45802911--45802975	32	2.0	32	81	0	76	49	1	0	49	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45804312--45804415	49	2.1	49	87	0	145	50	9	8	30	1.65
45806041--45806074	12	2.8	12	81	0	50	55	20	23	0	1.43
45807139--45807183	22	2.0	22	83	12	56	51	2	8	37	1.46
45807999--45808023	13	1.9	13	100	0	50	32	8	40	20	1.81
45809160--45809208	22	2.3	20	77	16	53	48	2	2	46	1.25
45809172--45809230	25	2.5	22	78	19	66	50	1	0	47	1.11
45809735--45809776	22	2.0	21	95	4	75	23	19	0	57	1.41
45809788--45809891	34	3.2	34	67	25	105	28	7	11	51	1.65
45809788--45809878	30	2.9	31	68	23	73	31	7	9	50	1.64
45810403--45810439	13	2.8	13	84	15	58	37	0	35	27	1.57
45812212--45812254	17	2.5	17	96	0	77	48	18	11	20	1.79
45817722--45817758	19	1.9	19	89	10	58	29	2	0	67	1.04
45818113--45818163	18	2.9	17	80	11	59	78	0	7	13	0.96
45818114--45818164	9	5.6	9	75	11	50	80	0	5	13	0.89
45819521--45819561	17	2.4	16	84	8	55	9	4	4	80	1.00
45837500--45837635	42	3.2	40	80	10	148	38	19	17	24	1.93
45837477--45837635	84	1.9	85	85	3	223	37	20	18	23	1.94
45841599--45841677	31	2.5	31	95	2	140	21	20	18	39	1.93
45841669--45841733	22	3.0	22	79	0	67	20	15	16	47	1.82
45844205--45844295	27	3.4	27	79	11	91	37	21	18	21	1.94
45844568--45844770	32	6.4	32	83	2	230	19	19	22	38	1.94
45844762--45844826	22	3.0	22	76	0	67	16	18	20	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45844940--45844993	28	1.9	28	92	0	90	16	27	25	29	1.97
45847232--45847317	21	4.0	21	79	13	95	37	24	23	15	1.93
45847232--45847318	44	2.0	41	82	10	104	36	24	22	16	1.94
45847787--45847870	22	3.9	22	73	14	68	48	0	1	50	1.08
45847898--45847970	19	3.7	19	70	24	62	46	1	0	52	1.09
45847988--45848021	15	2.2	16	89	5	52	55	0	0	44	0.99
45848048--45848105	15	3.6	15	72	17	53	50	1	1	46	1.22
45849755--45849801	23	2.0	23	91	0	76	42	10	4	42	1.59
45850363--45850577	108	2.0	108	93	0	367	27	11	18	42	1.84
45854501--45854578	40	2.0	40	84	5	104	29	23	29	17	1.97
45854663--45854941	42	6.7	41	89	1	360	16	25	26	32	1.96
45857355--45857428	33	2.2	33	92	2	121	32	2	28	36	1.71
45857669--45857706	17	2.2	17	95	0	67	10	36	13	39	1.79
45858718--45858786	36	1.9	36	96	0	129	31	10	8	49	1.67
45859184--45859236	24	2.2	24	96	0	97	43	3	3	49	1.38
45859343--45859388	22	2.1	22	88	8	67	45	10	4	39	1.59
45859328--45859865	56	9.7	56	96	1	987	47	10	2	39	1.54
45859399--45859444	22	2.1	22	87	0	65	47	13	2	36	1.54
45859455--45859500	22	2.1	22	91	0	74	47	10	2	39	1.51
45859497--45859545	22	2.2	21	83	16	64	46	10	0	42	1.37
45859564--45859608	22	2.1	21	84	12	56	44	11	4	40	1.60
45859619--45859664	22	2.1	22	88	8	67	45	10	4	39	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45859675--45859720	22	2.1	22	88	8	67	45	10	4	39	1.59
45859731--45859776	22	2.1	22	91	0	74	47	10	2	39	1.51
45859787--45859832	22	2.1	22	91	0	74	47	10	2	39	1.51
45859797--45859979	95	1.9	94	88	5	278	47	12	2	37	1.56
45859960--45860038	34	2.3	34	80	0	86	43	13	1	41	1.53
45860064--45860097	17	2.0	17	94	0	59	35	14	5	44	1.70
45860091--45860145	25	2.2	25	83	0	65	45	12	5	36	1.66
45860126--45860159	16	2.1	16	94	0	59	52	14	0	32	1.42
45865572--45865742	66	2.6	65	85	4	209	39	19	27	13	1.89
45865714--45865825	21	5.3	21	82	0	80	36	16	41	4	1.69
45865725--45865825	42	2.4	42	83	0	112	37	16	41	3	1.67
45866131--45866293	43	3.7	42	78	11	175	20	19	31	29	1.97
45866130--45866293	89	1.8	89	87	5	242	20	18	31	29	1.97
45866133--45866512	43	8.7	42	72	14	130	26	22	25	25	2.00
45866281--45866426	43	3.4	44	82	10	167	36	26	19	17	1.94
45867704--45867752	24	2.1	23	84	3	62	67	4	0	28	1.09
45868163--45868206	20	2.1	21	87	4	63	54	4	4	36	1.41
45870390--45870431	22	1.9	22	90	0	66	40	19	0	40	1.51
45871185--45871230	22	2.1	22	84	4	58	10	8	4	76	1.15
45878563--45878664	44	2.3	44	76	6	109	27	21	20	30	1.98
45878544--45878957	132	3.1	132	88	1	589	25	23	19	31	1.98
45878773--45878955	44	4.2	44	68	8	129	26	26	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45879082--45879223	45	3.2	45	70	16	132	24	25	21	28	1.99
45878949--45879244	89	3.3	89	82	0	351	26	23	22	27	2.00
45879777--45880116	45	7.6	44	71	10	199	26	24	17	31	1.97
45879824--45880116	89	3.3	89	71	11	238	26	24	17	32	1.97
45879816--45880116	134	2.2	134	80	3	320	26	24	16	32	1.96
45885063--45885131	22	3.1	22	83	8	95	43	15	21	18	1.88
45885125--45885187	19	3.0	19	72	24	63	34	15	26	22	1.94
45885143--45885288	25	5.8	25	87	4	188	35	15	24	23	1.94
45885089--45885288	50	4.2	49	77	14	195	37	16	24	22	1.93
45885111--45885288	75	2.5	71	87	7	236	36	15	24	23	1.94
45891738--45891786	25	2.0	25	100	0	98	48	20	18	12	1.79
45892098--45892149	16	3.4	16	73	10	63	19	1	17	61	1.44
45892095--45892155	30	2.0	30	100	0	122	19	3	16	60	1.49
45892100--45892149	15	3.3	15	69	20	50	18	2	18	62	1.43
45892330--45892354	3	8.3	3	100	0	50	32	0	0	68	0.90
45893785--45893810	11	2.4	11	100	0	52	38	7	0	53	1.30
45893858--45893904	21	2.3	21	92	3	78	36	0	0	63	0.94
45893777--45893882	42	2.5	42	92	4	171	35	2	0	61	1.11
45893860--45893904	20	2.2	20	88	7	65	37	0	0	62	0.96
45893858--45893919	20	2.9	21	85	9	63	37	0	3	59	1.13
45896947--45897073	29	4.1	29	72	20	123	53	9	7	29	1.61
45899447--45899664	26	8.5	26	70	15	123	41	1	3	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45899475--45899527	23	2.4	22	81	12	63	35	0	5	58	1.22
45899472--45899536	17	3.6	17	75	18	60	40	0	4	55	1.21
45899520--45899868	100	3.3	99	87	8	446	41	2	3	52	1.30
45899720--45899753	17	2.0	17	100	0	68	41	0	0	58	0.98
45899620--45899890	117	2.3	117	94	0	497	42	2	3	52	1.31
45899837--45899870	17	2.0	17	100	0	68	41	0	0	58	0.98
45899837--45899884	15	3.0	15	81	9	51	41	2	0	56	1.11
45900060--45900128	16	4.3	16	94	0	120	21	33	5	39	1.77
45908448--45908797	188	1.9	187	88	1	531	31	18	22	27	1.97
45908656--45908905	112	2.2	113	83	7	319	30	17	24	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218