genome.fa.s23.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  107  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31050163--31050192	12	2.6	11	94	5	51	76	0	23	0	0.78
31050962--31051044	35	2.4	35	93	2	141	40	0	21	37	1.54
31051359--31051469	23	5.0	23	83	7	124	19	18	25	36	1.95
31051917--31051948	15	2.1	15	94	0	55	37	0	25	37	1.56
31057343--31057403	21	2.8	21	80	5	68	16	21	26	36	1.94
31057366--31057416	21	2.5	21	77	3	59	17	15	25	41	1.89
31061430--31061535	28	3.8	28	83	2	142	34	12	23	29	1.91
31064814--31064865	25	2.1	25	85	0	68	48	15	15	21	1.81
31065775--31066167	50	7.9	50	89	1	549	21	29	21	26	1.99
31065775--31066210	149	2.9	150	86	4	565	22	29	20	27	1.99
31073369--31073406	18	2.1	18	95	0	67	28	13	31	26	1.93
31090412--31090466	28	1.9	29	88	3	85	29	10	10	49	1.72
31090495--31090752	129	2.0	126	80	8	281	35	5	8	50	1.55
31099845--31100147	27	11.3	27	83	2	351	21	16	20	40	1.91
31099845--31100151	54	5.7	54	86	1	402	22	16	20	40	1.91
31099845--31100151	80	3.8	81	83	3	359	22	16	20	40	1.91
31099845--31100151	107	2.9	107	89	1	427	22	16	20	40	1.91
31103430--31103487	23	2.5	23	77	2	62	22	12	13	51	1.74
31111713--31111748	15	2.4	15	100	0	72	27	16	30	25	1.97
31115817--31115894	27	2.9	27	88	0	111	32	38	14	15	1.87
31117235--31117300	13	5.1	13	77	0	69	31	9	24	34	1.87
31117242--31117300	26	2.3	26	90	0	91	33	8	27	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31117469--31117530	30	2.1	29	82	11	72	46	0	3	50	1.17
31117661--31117712	27	1.9	27	84	7	70	59	0	11	28	1.32
31128198--31128283	40	2.2	40	86	0	127	24	30	15	30	1.95
31128212--31128277	20	3.3	20	68	16	55	19	33	13	33	1.91
31129228--31129289	20	3.1	20	88	0	88	9	22	20	46	1.80
31143346--31143378	15	2.3	15	89	5	50	75	3	12	9	1.14
31157057--31157287	43	5.5	43	76	10	192	24	16	25	34	1.95
31157048--31157287	42	5.7	41	75	10	198	25	15	25	34	1.95
31157057--31157287	85	2.7	83	86	3	300	24	16	25	34	1.95
31170230--31170479	42	5.9	41	78	8	234	25	17	25	32	1.97
31170239--31170470	43	5.5	42	78	8	222	23	16	26	33	1.96
31170239--31170479	85	2.8	84	85	4	315	24	17	25	32	1.97
31178481--31178958	231	2.1	231	97	0	893	32	26	8	32	1.86
31185742--31186002	47	5.5	47	93	1	432	32	8	30	28	1.87
31186120--31186198	37	2.1	37	90	0	122	24	18	31	25	1.98
31188328--31188691	40	9.1	40	90	2	541	24	22	28	24	2.00
31188328--31188691	163	2.3	160	88	3	541	24	22	28	24	2.00
31191976--31192333	47	7.5	47	93	3	581	32	8	30	28	1.87
31192452--31192529	37	2.1	36	85	2	102	25	19	30	24	1.98
31196205--31196231	8	3.4	8	100	0	54	88	0	0	11	0.50
31196482--31196682	30	6.7	30	79	7	167	24	25	13	36	1.92
31196496--31196681	60	3.1	61	79	5	193	24	24	13	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31203367--31203593	30	7.6	30	76	6	194	25	25	11	38	1.88
31203579--31203649	29	2.4	30	75	11	76	25	26	12	35	1.92
31218274--31218322	23	2.1	23	85	11	64	65	6	10	18	1.43
31219485--31219860	50	7.5	50	72	5	285	23	19	22	34	1.96
31219528--31219893	50	7.3	50	74	2	295	24	20	22	32	1.98
31219481--31219893	100	4.1	100	89	0	565	24	19	22	33	1.97
31220050--31221373	132	10.1	131	84	6	1176	26	23	18	30	1.98
31220109--31221373	131	9.6	128	85	6	1194	27	24	18	30	1.98
31220758--31221199	44	10.1	44	63	18	111	25	23	20	29	1.99
31221304--31221576	44	6.2	44	71	8	135	27	24	18	30	1.98
31221213--31221709	175	2.8	175	88	4	727	25	23	19	30	1.98
31220955--31221699	306	2.4	303	75	10	798	25	23	20	30	1.98
31223911--31224010	9	10.6	9	74	18	53	9	7	4	80	1.02
31223901--31224011	57	1.9	58	85	8	156	8	8	3	80	1.02
31224000--31224043	17	2.6	16	86	13	54	15	2	9	72	1.19
31233631--31233720	46	2.0	46	97	0	171	34	22	18	24	1.96
31238365--31238440	39	1.9	39	86	0	107	50	0	3	46	1.20
31239624--31239669	24	1.9	24	82	8	58	10	17	45	26	1.81
31240801--31240843	20	2.2	19	87	4	59	6	11	13	67	1.41
31245712--31245737	5	5.2	5	100	0	52	38	19	19	23	1.93
31246381--31246440	30	2.0	31	86	3	86	40	0	40	20	1.52
31246551--31246613	31	2.1	30	84	3	81	39	0	38	22	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31246655--31246687	9	3.7	9	95	0	57	27	12	15	45	1.81
31247109--31247143	17	2.0	18	94	5	63	65	0	0	34	0.93
31247444--31247512	16	4.2	16	96	3	129	24	0	37	37	1.56
31247444--31247512	33	2.1	32	97	2	129	24	0	37	37	1.56
31247493--31247583	45	2.0	45	85	2	121	27	6	28	37	1.82
31247728--31247782	15	3.4	16	80	16	53	54	1	0	43	1.10
31247734--31247782	16	2.9	18	80	20	61	55	0	0	44	0.99
31247743--31248138	116	3.4	117	92	4	645	50	5	1	42	1.36
31247963--31248014	15	3.6	15	80	12	56	53	1	0	44	1.11
31248097--31248137	16	2.5	17	85	14	52	53	0	2	43	1.13
31252219--31252275	27	2.1	28	86	3	80	64	0	0	35	0.93
31252220--31252274	19	3.1	18	78	14	60	67	0	0	32	0.91
31258154--31258192	21	2.0	18	85	14	51	51	2	0	46	1.14
31259296--31259358	29	2.3	27	84	13	83	61	3	1	33	1.21
31265917--31265950	16	2.1	16	88	0	50	23	2	0	73	0.97
31276212--31276403	50	3.8	50	84	5	253	20	29	22	27	1.99
31278036--31278078	9	4.8	9	100	0	86	65	0	11	23	1.25
31281673--31282088	138	3.0	137	88	6	594	41	7	5	45	1.55
31281733--31281947	67	3.1	67	65	15	177	43	6	5	43	1.54
31288590--31289281	138	5.0	138	89	2	1034	39	8	6	45	1.61
31288590--31289281	274	2.5	276	88	2	1045	39	8	6	45	1.61
31289044--31289275	67	3.4	67	65	22	158	41	7	6	44	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31289393--31289641	40	6.3	39	77	4	203	28	20	24	26	1.99
31289393--31289638	119	2.1	118	80	5	271	28	20	24	26	1.99
31290511--31290543	4	8.2	4	100	0	66	75	0	0	24	0.80
31291048--31291091	22	2.0	22	91	4	72	31	36	0	31	1.58
31292105--31292146	21	2.0	21	85	4	57	33	11	11	42	1.78
31300400--31300540	43	3.3	42	84	4	158	26	18	21	33	1.97
31301762--31301839	36	2.1	37	90	2	122	24	32	19	24	1.98
31301957--31302322	47	7.7	47	96	2	651	30	30	8	31	1.87
31302184--31302262	25	3.3	25	64	10	74	34	27	5	32	1.79
31305951--31306200	40	6.4	39	85	6	294	25	27	22	24	2.00
31306000--31306201	39	5.2	39	89	6	293	26	27	21	24	1.99
31306666--31306763	43	2.3	43	96	1	180	27	33	15	23	1.95
31308561--31308635	37	2.1	37	89	2	116	26	30	20	22	1.98
31308753--31308963	44	4.6	45	81	15	258	30	29	8	31	1.87
31308753--31308965	87	2.3	89	85	13	269	30	30	8	30	1.88
31311700--31311913	47	4.6	47	95	1	369	29	29	8	32	1.88
31315438--31315550	40	2.8	40	89	0	163	26	27	19	26	1.99
31315455--31315633	40	4.5	40	79	6	127	25	26	21	25	2.00
31315940--31316018	29	2.7	29	86	5	106	27	32	15	24	1.95
31316000--31316101	43	2.4	43	98	1	197	26	35	15	22	1.94
31317962--31318040	37	2.1	37	88	4	115	25	30	18	25	1.98
31318158--31318599	47	9.4	47	94	0	749	28	30	8	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31321455--31321500	22	2.1	22	91	0	74	52	10	17	19	1.74
31321629--31321666	19	2.0	19	100	0	76	15	21	21	42	1.89
31334757--31335563	411	2.0	410	94	0	1409	31	16	21	30	1.96
31338080--31338118	7	5.4	7	90	6	60	17	51	0	30	1.46
31338100--31338137	19	2.0	19	85	10	51	21	42	0	36	1.53
31345427--31345632	48	4.3	48	77	4	184	27	17	29	24	1.98
31346674--31346719	22	2.1	22	100	0	92	41	0	28	30	1.56
31349335--31349432	27	3.5	28	87	5	119	26	12	28	32	1.92
31349366--31349446	27	2.9	27	85	5	81	30	9	24	34	1.88
31354160--31354353	48	4.0	48	82	4	239	26	20	30	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218