genome.fa.s23.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  11  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4122673--4122720	22	2.2	22	85	7	62	64	0	2	33	1.05
4122628--4122765	9	14.4	9	68	17	64	65	2	2	28	1.22
4122711--4122825	29	3.9	28	76	15	108	61	4	4	29	1.34
4122811--4122866	19	2.8	21	78	10	71	67	0	7	25	1.15
4123156--4123189	17	2.1	17	88	5	52	20	0	2	76	0.92
4123295--4123556	91	2.8	92	76	5	217	38	9	15	37	1.79
4143981--4144022	16	2.6	16	85	11	50	30	2	2	64	1.19
4146341--4146402	19	3.3	18	75	18	56	29	0	3	67	1.06
4148001--4148051	23	2.1	24	85	7	68	27	0	5	66	1.14
4150560--4150589	14	2.1	14	93	0	51	53	16	0	30	1.44
4152993--4153266	138	2.0	138	89	1	424	33	18	18	28	1.95
4153023--4153296	138	2.0	137	79	6	297	36	18	20	24	1.95
4154553--4154600	18	2.7	18	87	9	64	45	6	6	41	1.54
4165972--4166009	17	2.2	17	100	0	76	42	10	18	28	1.83
4174367--4174398	16	2.0	16	93	0	55	12	34	6	46	1.67
4175147--4175178	16	2.0	16	93	0	55	21	12	6	59	1.55
4175285--4175329	22	2.1	22	91	4	74	20	4	15	60	1.52
4175346--4175388	21	2.0	21	82	8	52	37	0	6	55	1.27
4175405--4175450	18	2.6	18	86	3	58	43	0	2	54	1.12
4175381--4175497	55	2.1	54	81	7	128	42	0	5	51	1.30
4175685--4175723	16	2.5	16	95	4	71	28	30	7	33	1.85
4175862--4175929	23	2.9	23	80	2	82	27	8	17	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4175866--4175945	23	3.4	23	81	5	81	31	7	17	43	1.77
4183690--4183731	4	10.5	4	100	0	84	50	23	0	26	1.50
4189899--4190049	75	2.0	76	97	1	286	45	6	22	25	1.77
4198249--4198309	28	2.2	28	94	5	106	27	8	21	42	1.81
4208380--4208505	53	2.4	51	84	8	164	30	16	11	40	1.85
4208402--4208520	53	2.2	54	87	4	177	28	15	11	44	1.81
4272238--4272279	3	13.7	3	95	5	75	69	0	0	30	0.89
4272237--4272276	19	2.1	19	100	0	80	70	0	0	30	0.88
4272238--4272280	22	2.0	22	100	0	86	69	0	0	30	0.88
4275353--4275383	4	7.8	4	100	0	62	74	0	25	0	0.82
4284002--4284031	12	2.5	12	94	0	51	53	0	23	23	1.46
4286389--4286436	24	2.0	25	87	4	71	20	4	6	68	1.28
4288148--4288182	16	2.2	16	89	0	52	54	0	0	45	0.99
4288947--4289009	30	2.1	30	87	0	90	58	12	1	26	1.43
4292015--4292039	13	1.9	13	100	0	50	36	24	8	32	1.84
4293691--4293759	34	2.0	34	97	0	129	53	2	36	7	1.44
4299754--4299801	17	2.8	17	87	6	62	47	2	2	47	1.25
4299984--4300116	40	3.2	40	75	14	149	48	3	9	39	1.50
4299957--4300116	87	1.8	87	98	0	311	46	3	10	40	1.53
4299957--4300096	47	3.1	47	76	14	186	45	3	10	40	1.56
4300743--4300841	31	3.2	31	74	7	85	37	14	10	38	1.79
4312296--4312449	55	2.7	57	75	18	137	61	0	2	35	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4312296--4312488	9	20.6	9	71	16	117	61	0	3	34	1.16
4312414--4312487	28	2.6	28	80	15	89	63	1	4	31	1.21
4312304--4312488	48	3.9	47	72	14	118	61	0	3	34	1.16
4312427--4312490	20	3.2	20	71	8	58	67	1	3	28	1.15
4312921--4313036	16	6.3	19	66	27	56	33	2	0	63	1.08
4312922--4312983	9	6.1	11	72	22	55	32	1	0	66	1.02
4312929--4313035	9	11.8	9	70	16	60	32	2	0	64	1.08
4312988--4313051	17	3.7	16	75	17	65	31	4	1	62	1.25
4312988--4313051	27	2.4	25	80	12	67	31	4	1	62	1.25
4313002--4313063	27	2.3	27	81	10	65	33	4	3	58	1.36
4316289--4316323	18	1.9	18	88	0	52	60	2	0	37	1.12
4316312--4316455	10	14.8	9	71	15	65	64	2	2	31	1.16
4316318--4316390	21	3.7	20	78	7	69	60	2	1	35	1.20
4316783--4316953	28	6.4	26	70	20	90	33	1	2	61	1.21
4316802--4316953	27	5.8	25	74	18	96	33	1	2	62	1.17
4316803--4316961	19	8.9	17	71	15	76	33	1	2	62	1.16
4322257--4322320	19	3.3	19	64	20	51	45	3	14	37	1.60
4322244--4322330	39	2.2	39	97	2	165	41	5	12	40	1.67
4325460--4325516	25	2.3	25	78	6	62	31	3	1	63	1.22
4325470--4325528	26	2.4	24	75	10	57	38	5	1	54	1.33
4326557--4326599	19	2.2	19	83	8	50	16	13	16	53	1.73
4329893--4329995	48	2.1	48	80	7	111	33	4	1	59	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4329917--4329995	10	8.0	10	73	19	53	34	3	2	59	1.29
4329912--4329963	20	2.5	20	81	9	61	30	5	3	59	1.39
4341958--4342078	62	2.0	62	90	3	190	41	4	9	43	1.59
4355041--4355101	27	2.3	27	85	0	77	40	31	4	22	1.75
4357651--4357908	91	2.8	91	96	0	473	47	2	2	47	1.30
4358049--4358090	15	2.9	15	82	10	52	47	0	0	52	1.00
4358165--4358210	16	2.9	16	78	12	51	45	0	2	52	1.13
4358272--4358313	15	2.7	16	82	14	52	45	0	2	52	1.13
4358263--4358304	15	2.9	15	82	10	52	47	0	0	52	1.00
4357993--4358315	107	3.0	107	97	0	601	43	2	5	48	1.38
4358458--4358548	45	2.0	44	87	2	128	32	28	6	31	1.83
4359892--4359949	16	3.4	17	78	7	55	31	0	3	65	1.09
4367708--4368004	50	5.9	50	92	1	468	20	31	22	25	1.98
4368340--4368399	30	2.0	30	87	3	86	30	23	5	41	1.75
4369640--4369779	42	3.3	41	83	6	156	41	18	25	15	1.89
4369718--4369782	21	3.1	21	66	16	53	41	15	23	20	1.89
4369790--4369859	32	2.2	32	94	2	122	51	12	18	17	1.76
4372186--4372212	11	2.5	11	100	0	54	62	0	0	37	0.95
4373495--4373520	11	2.4	11	100	0	52	38	0	0	61	0.96
4373495--4373535	12	3.5	12	86	3	57	36	0	0	63	0.95
4376526--4376577	24	2.2	24	85	0	68	34	5	9	50	1.59
4376526--4376589	24	2.7	24	82	4	67	34	4	12	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4384723--4384774	24	2.2	24	89	0	77	55	9	1	32	1.43
4384970--4385032	30	2.1	30	81	0	72	60	12	1	25	1.42
4388423--4388512	36	2.9	30	73	20	85	51	1	0	47	1.08
4388475--4388585	55	2.0	55	98	0	213	51	0	3	44	1.25
4389016--4389071	21	2.9	18	80	17	67	37	5	1	55	1.33
4389178--4389211	18	1.9	17	88	5	50	41	2	14	41	1.61
4395278--4395309	2	16.0	2	100	0	64	0	0	50	50	1.00
4395976--4396038	27	2.3	27	80	17	69	33	12	3	50	1.56
4396992--4397070	24	3.1	24	74	15	77	35	2	1	60	1.18
4397285--4397357	34	2.1	34	94	0	128	39	9	10	39	1.73
4399854--4399891	19	1.9	20	89	10	60	28	13	7	50	1.69
4407206--4407235	14	2.1	15	93	6	53	36	6	3	53	1.44
4415131--4415179	3	16.3	3	91	0	80	32	63	0	4	1.13
4421444--4421479	18	2.0	18	94	0	63	22	36	27	13	1.92
4424502--4424528	6	4.5	6	100	0	54	0	0	29	70	0.88
4426563--4426598	11	3.3	11	92	0	54	47	8	27	16	1.75
4426671--4426709	19	2.1	19	95	0	69	46	0	23	30	1.53
4449043--4449139	10	9.7	9	70	15	50	61	4	4	29	1.33
4450570--4450618	13	3.8	13	80	0	53	34	20	8	36	1.82
4450569--4450620	26	2.0	27	84	3	70	34	21	7	36	1.82
4466234--4466277	22	2.0	22	100	0	88	31	18	13	36	1.90
4466837--4466892	22	2.4	23	77	16	62	51	1	7	39	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4468439--4468494	27	2.0	29	86	10	82	10	1	33	53	1.46
4469026--4469198	86	2.0	86	89	0	265	25	26	22	25	2.00
4469204--4469319	41	2.7	43	77	9	130	29	22	18	30	1.97
4469330--4470011	88	7.8	88	89	1	981	26	24	21	27	1.99
4469591--4469994	44	9.2	44	62	20	112	24	24	22	29	1.99
4471748--4471803	6	9.2	6	92	3	85	30	0	0	69	0.89
4471817--4471860	14	3.1	14	93	3	70	20	0	0	79	0.73
4471749--4471859	6	16.6	7	74	10	67	29	0	0	70	0.88
4474325--4474375	9	5.2	9	82	13	57	45	1	0	52	1.12
4474324--4474382	11	5.6	11	77	22	65	42	1	0	55	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218