genome.fa.s23.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  165  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50086509--50086630	30	4.0	30	91	1	181	46	6	20	26	1.75
50086559--50086611	15	3.5	15	72	10	54	47	7	16	28	1.74
50092609--50092732	5	24.8	5	98	0	239	40	20	0	39	1.52
50092981--50093022	7	6.0	7	81	8	50	45	14	0	40	1.45
50093987--50094032	16	2.7	17	90	6	67	69	4	19	6	1.28
50106570--50106611	15	2.7	16	78	14	52	19	11	2	66	1.34
50124825--50124865	18	2.3	18	83	8	57	53	4	0	41	1.22
50124884--50124910	9	3.0	9	100	0	54	55	0	0	44	0.99
50132752--50132799	12	4.0	12	88	0	78	62	0	20	16	1.33
50132752--50132799	6	8.0	6	83	0	60	62	0	20	16	1.33
50132945--50133005	26	2.4	26	86	2	79	42	13	11	32	1.79
50134561--50134613	27	2.0	27	88	0	79	32	13	7	47	1.70
50134632--50134664	17	1.9	18	88	11	52	42	3	12	42	1.57
50150135--50150175	19	2.1	20	86	4	57	31	9	2	56	1.45
50150645--50150700	25	2.3	25	82	14	73	30	5	0	64	1.16
50150645--50150699	26	2.1	27	86	10	78	29	5	0	65	1.15
50150654--50150707	26	2.1	25	86	3	72	35	3	0	61	1.14
50155475--50155510	18	1.9	19	88	5	56	50	5	8	36	1.56
50159945--50160103	52	3.2	52	91	5	249	25	8	22	43	1.82
50159997--50160294	116	2.6	116	99	0	587	26	10	21	42	1.84
50159903--50160219	168	1.9	162	94	3	553	25	11	20	42	1.85
50160113--50160219	46	2.2	49	86	9	148	26	9	21	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50161319--50161391	23	3.3	23	66	11	71	45	2	4	47	1.36
50161313--50161418	43	2.5	41	86	9	142	48	4	2	44	1.38
50163201--50163408	91	2.3	91	88	2	301	45	3	3	46	1.39
50163413--50163716	120	2.5	120	93	4	499	42	2	4	50	1.35
50163549--50163600	15	3.6	15	80	12	56	44	0	1	53	1.11
50163665--50163699	18	2.0	17	88	5	52	45	0	0	54	0.99
50163653--50163969	157	2.0	157	96	0	589	47	4	3	44	1.41
50163822--50163856	18	2.0	17	88	5	52	45	0	0	54	0.99
50163654--50163892	76	3.1	75	65	16	207	46	2	3	46	1.34
50164225--50164288	24	2.7	24	87	0	101	54	7	1	35	1.39
50165536--50165599	33	1.9	33	84	12	87	21	0	6	71	1.07
50168607--50168673	34	2.0	34	93	0	116	38	17	14	28	1.90
50169306--50169422	34	3.5	32	80	10	128	41	0	11	46	1.41
50169476--50169740	126	2.1	126	84	2	345	37	13	17	31	1.89
50173263--50173301	18	2.2	18	95	0	69	41	10	25	23	1.86
50175728--50175761	18	1.9	18	88	5	52	23	0	2	73	0.97
50181573--50181597	2	12.5	2	100	0	50	0	48	0	52	1.00
50188036--50188074	20	1.9	21	89	5	62	48	5	0	46	1.24
50188111--50188204	12	8.2	11	68	19	50	48	1	3	46	1.25
50193521--50193671	41	3.7	41	90	1	205	31	19	24	24	1.98
50193674--50193820	42	3.5	43	75	7	122	23	15	24	36	1.94
50196719--50196861	42	3.4	43	75	4	141	37	25	16	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50196843--50196891	26	1.9	25	91	4	80	28	30	20	20	1.98
50196869--50197016	41	3.6	41	85	7	203	23	22	18	34	1.96
50208148--50208220	26	2.8	26	87	0	101	31	17	9	41	1.82
50210151--50210198	25	1.9	25	91	0	78	37	0	2	60	1.09
50211523--50211627	37	2.7	37	73	5	93	21	20	28	28	1.99
50216631--50216748	57	2.1	58	85	1	157	45	5	19	29	1.71
50220358--50220391	11	3.1	11	86	0	50	67	8	2	20	1.31
50224895--50224930	12	3.0	12	87	0	54	75	0	0	25	0.81
50224904--50224970	20	3.3	20	77	12	66	71	4	2	20	1.17
50224920--50224963	19	2.2	20	88	11	65	72	4	4	18	1.19
50231685--50231721	2	19.5	2	83	10	51	51	2	0	45	1.15
50231685--50231719	15	2.3	15	90	0	52	51	2	0	45	1.16
50231689--50231722	17	2.0	17	94	0	59	52	2	0	44	1.16
50234860--50234897	16	2.4	16	91	4	60	10	0	36	52	1.36
50234882--50234961	34	2.3	34	80	6	90	28	2	23	45	1.66
50234997--50235115	34	3.6	32	78	9	112	40	0	13	46	1.43
50235198--50235575	125	3.0	125	85	4	485	35	15	19	29	1.93
50238639--50238686	25	1.9	25	83	8	62	58	4	0	37	1.18
50238635--50238690	25	2.3	23	77	16	60	53	3	0	42	1.18
50239106--50239142	18	2.1	18	89	0	56	40	8	24	27	1.83
50240674--50240725	25	2.1	24	82	10	61	67	1	1	28	1.12
50244495--50244538	19	2.4	18	81	7	52	40	15	9	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50246500--50246642	68	2.1	68	84	2	180	36	13	21	28	1.91
50258325--50258353	12	2.3	13	94	5	51	13	10	0	75	1.04
50262138--50262184	21	2.2	21	84	3	58	34	29	21	14	1.93
50265823--50265953	67	2.0	67	96	0	244	28	33	18	19	1.96
50266076--50266189	57	2.0	57	91	3	185	23	26	20	29	1.99
50269196--50269238	22	2.0	21	82	8	52	53	4	34	6	1.49
50280250--50280325	10	7.5	11	72	19	51	40	2	1	55	1.22
50280250--50280323	38	2.0	37	84	7	96	40	2	1	55	1.22
50283161--50283237	40	1.9	39	82	10	93	33	23	19	23	1.97
50283251--50283288	14	2.7	14	91	0	58	26	52	5	15	1.64
50286989--50287071	18	4.6	18	76	5	78	46	24	14	14	1.81
50290344--50290403	29	2.1	29	87	6	86	43	13	8	35	1.74
50290428--50290464	19	1.9	19	88	0	56	35	18	8	37	1.81
50300628--50300687	30	2.0	30	100	0	120	20	3	13	63	1.43
50308269--50308320	18	3.1	17	77	8	61	26	28	0	44	1.55
50315441--50315478	19	2.0	19	94	0	67	36	18	10	34	1.85
50316859--50316946	44	2.0	44	100	0	176	22	20	20	36	1.95
50320406--50320445	18	2.2	18	86	8	55	45	0	0	55	0.99
50327592--50327673	42	2.0	42	90	4	130	39	17	12	31	1.86
50329090--50329140	26	2.0	25	81	11	59	60	3	0	35	1.15
50329383--50329420	12	3.2	12	85	7	60	73	23	0	2	0.95
50329372--50329420	23	2.2	22	92	3	80	71	26	0	2	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50330385--50330441	30	1.9	30	88	0	87	35	0	47	17	1.48
50334623--50334659	17	2.2	17	90	0	56	54	0	5	40	1.24
50336070--50336594	50	10.5	50	71	3	385	22	18	23	34	1.96
50336118--50336626	100	5.1	99	83	5	632	23	19	23	33	1.97
50336118--50336627	200	2.5	201	90	1	785	23	19	23	33	1.97
50336716--50337028	44	7.2	45	62	18	108	24	23	21	30	1.99
50336618--50337742	131	8.7	131	90	3	1789	25	23	22	29	1.99
50337131--50337359	116	2.0	116	95	0	413	26	22	22	28	1.99
50336618--50337746	509	2.2	516	90	3	1781	24	23	22	29	1.99
50337511--50337960	218	2.1	218	91	1	724	25	23	22	28	1.99
50337647--50337829	87	2.1	87	91	2	296	27	24	21	26	1.99
50337734--50338445	131	5.4	131	90	0	1057	25	23	21	29	1.99
50337385--50338091	349	2.0	349	91	2	1161	25	23	21	29	1.99
50337249--50338222	480	2.0	480	91	0	1574	25	23	21	29	1.99
50337734--50338442	262	2.7	262	91	0	1170	25	23	21	29	1.99
50338404--50338794	44	8.9	43	82	4	415	21	27	21	29	1.99
50338411--50338796	88	4.4	88	90	1	526	21	27	22	29	1.99
50338402--50338796	132	3.0	131	82	2	486	21	27	21	29	1.99
50340090--50340123	14	2.3	15	90	5	52	14	5	0	79	0.91
50345382--50345418	17	2.2	17	90	0	56	54	0	5	40	1.24
50356538--50356692	77	2.0	77	96	0	283	27	20	20	31	1.97
50358202--50358271	35	2.0	35	97	2	133	35	12	31	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50367041--50367157	62	1.9	60	86	5	164	49	5	3	41	1.41
50367117--50367180	29	2.1	31	83	13	80	46	7	3	42	1.48
50367100--50367244	68	2.1	71	80	7	163	51	3	4	41	1.38
50370894--50370923	12	2.6	11	90	10	51	40	3	10	46	1.54
50376326--50376462	40	3.4	39	78	7	123	35	16	28	19	1.94
50382187--50382226	18	2.2	18	86	13	55	62	5	12	20	1.48
50383112--50383276	40	4.2	40	78	3	163	33	16	27	21	1.95
50383110--50383270	80	2.0	80	84	2	207	34	16	26	22	1.95
50388159--50388197	15	2.6	15	79	0	51	74	2	0	23	0.94
50396924--50397132	103	2.0	103	88	8	316	26	16	12	44	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218