genome.fa.s23.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  207  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61373364--61373416	27	2.0	27	88	0	79	0	26	0	73	0.83
61373355--61373428	7	9.9	7	78	17	69	1	27	0	71	0.94
61373353--61373425	24	3.1	23	82	7	94	1	26	0	72	0.93
61373364--61373432	17	4.7	15	76	20	74	1	26	0	72	0.93
61373936--61374072	30	4.6	30	76	10	131	41	2	23	32	1.69
61373915--61374065	59	2.5	59	86	5	189	39	2	25	32	1.70
61379167--61379230	22	2.9	21	79	9	56	40	6	1	51	1.36
61379914--61379962	26	1.9	25	83	4	62	26	2	10	61	1.39
61381100--61381145	24	1.9	24	86	0	65	43	19	2	34	1.63
61384865--61384907	17	2.6	16	82	13	52	39	0	18	41	1.51
61384851--61384894	17	2.5	19	82	17	60	36	0	20	43	1.52
61385028--61385070	18	2.4	18	88	0	68	65	9	4	20	1.40
61386426--61386461	12	3.0	12	91	0	54	41	0	0	58	0.98
61400215--61400245	3	10.7	3	93	6	55	67	0	32	0	0.91
61402230--61402272	18	2.3	18	84	8	50	81	4	9	4	0.97
61402629--61402702	31	2.4	31	95	0	130	43	17	16	22	1.88
61403737--61403782	25	1.9	25	82	8	60	10	13	13	63	1.53
61409082--61409122	18	2.2	19	87	12	59	24	0	9	65	1.22
61411314--61411357	21	2.1	21	82	0	52	61	15	4	18	1.50
61412096--61412152	24	2.6	22	81	15	66	68	1	0	29	1.00
61412115--61412152	19	2.0	20	89	5	60	71	0	0	28	0.87
61414971--61415005	15	2.3	15	95	0	61	31	17	22	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61420005--61420056	18	2.7	21	72	22	60	21	9	0	69	1.17
61427924--61427989	32	2.1	32	83	10	84	3	28	0	68	1.05
61443436--61443532	38	2.6	38	85	3	124	35	16	16	31	1.91
61447218--61447321	30	3.4	30	76	8	111	28	16	13	41	1.86
61453014--61453084	28	2.5	28	81	0	97	26	16	21	35	1.95
61457342--61457384	19	2.1	21	83	8	54	76	0	4	18	0.95
61457401--61457447	20	2.1	22	85	14	62	40	14	10	34	1.81
61459964--61460163	101	2.0	101	88	2	294	30	26	17	26	1.97
61469543--61469580	18	2.2	18	85	4	51	34	7	15	42	1.76
61476504--61476574	28	2.5	29	79	6	92	28	15	21	35	1.94
61480578--61480624	20	2.4	19	83	13	60	74	0	6	19	1.03
61485001--61485071	28	2.5	28	77	4	81	23	16	22	36	1.94
61488099--61488125	12	2.2	12	100	0	54	14	18	18	48	1.82
61494243--61494289	20	2.3	20	81	0	58	27	0	8	63	1.23
61495900--61495929	6	5.0	6	100	0	60	16	0	0	83	0.65
61495875--61495956	37	2.1	37	82	10	94	24	2	1	71	1.05
61496614--61496638	11	2.3	11	100	0	50	40	0	0	60	0.97
61510380--61510416	20	1.9	19	89	10	58	43	0	2	54	1.14
61510385--61510437	28	1.9	27	85	11	72	35	0	3	60	1.15
61510570--61510619	21	2.5	21	83	6	59	34	10	4	52	1.54
61516818--61516919	20	5.4	18	71	17	57	64	4	0	30	1.14
61516827--61516909	20	4.3	20	73	14	68	63	4	0	31	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61516821--61516918	9	10.6	9	70	22	53	65	5	0	29	1.14
61516878--61516918	17	2.4	17	83	0	55	68	7	0	24	1.15
61517521--61517589	20	3.7	19	69	9	52	34	4	4	56	1.39
61517521--61517570	20	2.5	20	80	3	57	30	2	4	64	1.23
61518690--61518731	15	2.9	15	82	10	52	47	0	0	52	1.00
61518865--61518974	45	2.6	43	79	11	120	32	29	5	32	1.80
61518955--61519022	16	4.2	16	94	0	118	35	36	0	27	1.58
61518955--61519022	32	2.1	32	100	0	136	35	36	0	27	1.58
61521415--61521458	20	2.2	20	96	4	81	29	31	4	34	1.78
61525931--61525970	20	2.0	20	90	0	62	27	10	12	50	1.72
61526068--61526106	20	2.0	20	94	0	69	48	2	0	48	1.15
61526137--61526189	17	3.2	15	80	17	52	41	1	1	54	1.22
61529509--61529569	25	2.6	25	82	7	74	62	3	31	3	1.27
61529629--61529666	18	2.1	18	95	0	67	44	0	55	0	0.99
61529629--61529680	24	2.2	24	82	0	59	44	0	53	1	1.11
61534414--61534444	16	1.9	16	93	0	53	16	16	9	58	1.63
61535693--61535728	2	18.0	2	100	0	72	50	0	0	50	1.00
61536551--61536630	31	2.6	31	85	0	106	52	10	12	25	1.70
61537232--61537320	6	13.8	6	82	13	97	52	1	44	1	1.15
61537210--61537320	39	2.8	39	80	2	134	51	1	45	1	1.22
61537224--61537314	33	2.7	34	81	8	107	52	1	45	1	1.15
61537212--61537312	27	3.6	27	75	18	91	50	1	45	1	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61554566--61555262	348	2.0	348	99	0	1376	37	11	13	37	1.81
61558186--61558232	21	2.2	21	88	7	69	25	25	19	29	1.98
61560106--61560148	22	2.0	22	86	9	61	37	9	4	48	1.56
61569257--61569469	101	2.1	101	86	0	300	30	16	24	28	1.96
61571151--61571448	51	5.9	50	73	5	258	30	14	25	29	1.95
61571150--61571436	102	2.8	102	87	2	373	30	14	25	29	1.95
61576031--61576066	16	2.2	17	90	5	56	83	0	13	2	0.76
61591367--61591579	101	2.1	101	85	3	286	30	16	24	29	1.96
61591425--61591612	101	1.9	99	80	6	218	31	18	22	27	1.97
61598236--61598343	56	1.9	56	92	0	180	32	12	13	40	1.83
61598424--61598498	27	2.8	26	80	8	78	20	28	32	20	1.97
61620337--61620502	44	3.8	43	78	8	158	27	22	24	25	2.00
61620337--61620507	90	1.9	87	83	6	220	27	22	24	25	2.00
61620338--61620527	87	2.2	88	81	7	208	29	21	23	26	1.99
61622080--61622140	28	2.3	26	81	13	70	26	9	3	60	1.43
61638231--61638288	25	2.4	23	80	5	62	67	5	5	22	1.31
61638716--61638754	19	2.1	18	90	9	60	35	0	2	61	1.10
61638718--61638761	20	2.2	20	84	8	54	36	0	2	61	1.09
61642651--61642888	41	5.7	41	84	4	287	34	22	20	23	1.97
61642651--61642953	84	3.6	84	83	4	337	33	21	20	24	1.97
61642918--61643058	43	3.3	43	75	5	124	32	21	16	29	1.95
61643328--61643460	66	2.0	66	80	2	151	11	26	19	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61643431--61643478	21	2.3	21	92	0	78	2	47	18	31	1.60
61643366--61643525	87	1.8	87	83	0	203	12	28	16	42	1.85
61648793--61648890	33	2.9	33	84	7	108	36	22	10	30	1.87
61649107--61649303	41	4.8	41	90	5	290	27	22	20	28	1.99
61651870--61651997	9	14.8	9	70	12	81	32	3	18	46	1.65
61651915--61652039	19	6.1	20	70	24	75	29	1	20	48	1.58
61655054--61655100	20	2.3	20	86	13	62	59	4	2	34	1.29
61656571--61656605	17	2.1	17	88	0	52	2	28	17	51	1.59
61657292--61657343	27	1.9	27	88	0	77	50	9	0	40	1.35
61657413--61657449	10	3.7	10	92	0	65	43	13	0	43	1.44
61659172--61659239	14	4.9	14	72	16	52	41	36	0	22	1.54
61659726--61660043	41	7.8	41	74	7	231	37	22	22	16	1.93
61659763--61659994	81	2.8	81	84	5	288	37	23	21	16	1.94
61659761--61660043	82	3.5	81	83	3	327	38	22	22	16	1.93
61661000--61661039	14	2.7	15	84	11	55	67	0	0	32	0.91
61661004--61661037	14	2.4	14	95	0	59	67	0	0	32	0.91
61677581--61677670	42	2.1	42	83	6	110	57	5	8	27	1.51
61685219--61685272	28	2.0	28	85	3	74	33	3	12	50	1.59
61688717--61688757	21	2.0	21	85	0	55	65	19	7	7	1.41
61692837--61694068	616	2.0	616	98	0	2392	30	16	20	32	1.95
61695377--61695469	30	3.1	30	84	0	123	31	8	23	36	1.85
61702258--61702495	41	5.7	41	84	4	287	34	22	20	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61702258--61702560	84	3.6	84	83	4	337	33	21	20	24	1.97
61703036--61703083	21	2.3	21	92	0	78	2	47	18	31	1.60
61715317--61715432	51	2.3	51	82	5	146	36	18	5	40	1.73
61716038--61716078	16	2.6	16	96	0	73	46	4	2	46	1.37
61719804--61719831	2	14.0	2	100	0	56	0	50	0	50	1.00
61721935--61722115	53	3.7	52	74	19	199	49	7	3	39	1.47
61721949--61722132	93	2.0	93	95	0	332	49	6	4	39	1.49
61722179--61722238	22	2.6	23	89	5	86	50	1	1	46	1.21
61725521--61725570	4	12.5	4	100	0	100	50	26	0	24	1.50
61734583--61734612	15	2.0	15	93	0	51	76	0	0	23	0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218