genome.fa.s23.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  144  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43873398--43873487	25	3.7	25	70	15	80	22	28	22	26	1.99
43874511--43874543	12	2.8	12	90	0	57	18	21	48	12	1.80
43879707--43879744	20	1.9	20	84	10	51	76	2	0	21	0.91
43880067--43880149	42	2.0	42	90	0	130	22	26	36	14	1.93
43880759--43880802	17	2.6	17	96	0	79	20	40	15	22	1.90
43881329--43881390	19	3.2	18	84	15	56	72	1	14	11	1.19
43881346--43881394	11	4.6	11	78	21	52	73	0	14	12	1.10
43881392--43881465	23	3.3	23	72	24	84	55	4	24	16	1.58
43881404--43881473	22	3.3	19	72	24	68	60	4	20	15	1.52
43881392--43881483	45	2.0	45	100	0	184	58	4	21	15	1.54
43881398--43881466	20	3.2	20	67	25	59	56	4	23	15	1.57
43883555--43883597	14	3.1	14	80	3	52	62	2	0	34	1.08
43891704--43891744	19	2.1	20	86	4	57	31	9	2	56	1.45
43891903--43891957	28	2.0	28	85	7	76	45	9	0	45	1.35
43891915--43891957	9	4.7	9	88	5	68	41	9	0	48	1.35
43892415--43892558	76	1.9	76	84	2	191	29	19	20	31	1.97
43899799--43899850	25	2.1	26	89	7	81	59	7	0	32	1.26
43904767--43904818	24	2.2	24	92	0	86	51	9	1	36	1.46
43905475--43905515	19	2.3	18	88	12	66	39	2	4	53	1.35
43905617--43905673	29	2.0	29	86	6	80	40	17	12	29	1.86
43911770--43911808	11	3.0	14	78	21	57	30	0	0	69	0.89
43911737--43911808	29	2.7	25	78	19	74	27	5	0	66	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43911742--43912131	52	7.6	51	72	12	239	29	7	3	59	1.41
43911920--43911960	18	2.3	19	79	12	50	29	4	2	63	1.28
43911981--43912132	26	6.3	22	76	14	67	27	6	5	60	1.43
43912080--43912127	24	2.0	23	88	4	69	29	10	4	56	1.52
43921953--43921988	19	1.9	20	88	11	58	63	0	0	36	0.94
43921956--43922002	19	2.3	21	78	14	53	59	4	2	34	1.29
43922323--43922356	8	4.4	8	88	7	52	23	0	0	76	0.79
43922318--43922356	15	2.5	15	87	4	51	25	0	0	74	0.82
43932149--43932179	3	10.3	3	100	0	62	32	0	0	67	0.91
43932618--43932652	15	2.4	14	90	4	52	71	0	2	25	1.00
43935452--43935544	43	2.1	43	82	2	105	26	15	25	32	1.95
43939786--43939907	41	2.9	43	76	8	124	29	17	12	40	1.86
43943334--43943384	18	2.9	18	79	2	59	80	5	5	7	1.02
43944786--43944854	35	1.9	36	83	13	90	65	2	11	20	1.38
43951328--43951381	25	2.3	25	75	18	62	53	7	3	35	1.47
43963574--43963617	19	2.4	18	85	7	61	75	0	22	2	0.92
43963574--43963617	6	7.2	6	87	5	61	75	0	22	2	0.92
43964515--43964722	45	4.7	45	75	4	181	30	20	21	27	1.98
43964515--43964725	89	2.4	89	83	3	246	30	20	21	27	1.98
43964645--43965246	143	4.2	143	85	2	757	30	20	21	26	1.98
43964650--43965246	286	2.1	283	87	2	856	30	20	21	27	1.98
43965260--43965507	44	5.6	45	79	6	193	29	19	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43965300--43965507	45	4.7	45	81	4	215	30	20	23	25	1.98
43965260--43965423	89	1.8	89	84	3	222	28	20	23	28	1.99
43967127--43967161	3	11.7	3	93	0	61	31	0	2	65	1.07
43969015--43969054	21	1.9	22	85	10	57	57	0	17	25	1.40
43969503--43969533	9	3.4	9	90	0	53	38	22	12	25	1.90
43970339--43970413	30	2.3	33	82	15	93	42	0	2	54	1.14
43970779--43970841	24	2.6	23	85	9	81	57	0	3	39	1.15
43974411--43974441	6	5.2	6	100	0	62	67	0	16	16	1.23
43976782--43976961	92	2.0	92	89	2	281	44	8	22	23	1.81
43979548--43979593	22	2.1	21	84	15	58	15	6	4	73	1.19
43979736--43979760	7	3.6	7	100	0	50	40	0	0	60	0.97
43983030--43983131	30	3.4	30	82	4	127	26	19	25	28	1.99
43982996--43983131	59	2.3	60	85	5	186	27	21	24	26	1.99
43983000--43983131	30	4.4	30	77	3	115	28	21	24	25	1.99
43985734--43985791	21	2.7	22	81	7	75	34	3	0	62	1.12
43985892--43985932	20	2.0	20	85	0	55	56	7	2	34	1.40
43985960--43986003	22	2.1	20	84	12	61	52	2	0	45	1.13
43986058--43986113	19	3.0	19	78	19	64	57	0	0	42	0.99
43986069--43986123	21	2.8	19	82	17	60	63	0	0	36	0.95
43986191--43986246	25	2.3	25	81	9	71	76	5	3	14	1.09
43991350--43991415	35	1.9	34	87	9	98	51	1	7	39	1.40
43992617--43992660	19	2.3	20	85	14	58	52	0	22	25	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43998542--43998601	31	2.1	29	82	14	72	31	18	26	23	1.97
44007147--44007218	26	2.8	26	100	0	144	27	25	23	23	2.00
44008959--44009036	27	2.9	27	94	0	129	16	23	29	30	1.96
44008988--44009311	33	9.4	33	68	22	152	20	20	27	32	1.97
44009048--44009184	42	3.5	41	77	17	173	21	18	27	32	1.97
44009011--44009186	75	2.3	75	95	0	307	21	19	26	32	1.97
44009087--44009288	102	2.0	102	94	0	350	20	21	27	30	1.98
44008986--44009321	177	1.9	177	93	0	573	20	20	27	31	1.97
44010716--44010826	49	2.4	47	83	6	145	28	16	5	49	1.67
44019262--44019431	76	2.3	75	85	5	236	54	1	14	29	1.48
44019600--44019640	19	2.2	19	86	8	57	63	0	7	29	1.21
44019636--44019665	12	2.6	12	94	5	53	43	0	30	26	1.55
44019636--44019714	5	14.6	5	72	15	50	55	0	21	22	1.43
44019636--44019712	11	7.0	11	80	5	66	55	0	20	23	1.43
44019636--44019714	16	4.8	16	76	3	68	55	0	21	22	1.43
44021675--44021930	106	2.4	105	86	7	340	30	13	21	34	1.92
44021675--44021923	52	4.7	52	85	4	329	30	12	21	34	1.91
44032038--44032174	20	6.9	19	73	8	78	14	31	19	34	1.92
44032095--44032244	60	2.5	60	84	1	212	12	32	20	35	1.90
44034264--44034366	42	2.4	43	78	1	109	27	18	22	32	1.97
44040370--44040394	8	3.1	8	100	0	50	24	0	0	76	0.80
44046191--44046332	44	3.2	44	88	2	205	27	16	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44111265--44111356	25	3.8	25	69	13	75	26	20	11	41	1.87
44114585--44114620	17	2.1	18	89	5	56	44	0	11	44	1.39
44126789--44126833	21	2.1	22	84	12	58	51	0	6	42	1.28
44127539--44127602	31	2.1	31	96	0	119	43	6	10	39	1.65
44131042--44131086	23	2.0	23	91	4	74	60	0	0	40	0.97
44133635--44133715	43	1.9	43	87	2	119	27	29	18	24	1.98
44135117--44135154	15	2.4	17	86	8	53	68	2	0	28	1.03
44138047--44138081	12	2.9	12	91	0	52	42	31	5	20	1.75
44139880--44139917	15	2.6	16	84	16	55	39	34	0	26	1.57
44139891--44139932	14	2.9	15	86	10	52	35	38	0	26	1.57
44139882--44139995	49	2.3	51	85	8	155	37	37	0	24	1.56
44140160--44140218	21	2.7	22	84	7	75	35	40	0	23	1.55
44140213--44140260	14	3.4	14	77	5	51	43	33	0	22	1.54
44140533--44140727	41	4.8	41	88	0	273	34	24	20	21	1.97
44140779--44140864	39	2.2	41	81	6	97	24	20	19	34	1.96
44144848--44145276	44	9.7	43	72	12	230	30	21	16	31	1.96
44144849--44145052	89	2.3	88	87	0	291	30	23	17	28	1.97
44144840--44145278	133	3.3	131	74	13	380	30	21	16	31	1.95
44161576--44161782	20	10.4	19	69	12	87	14	31	20	34	1.92
44161633--44161782	60	2.5	60	87	1	230	11	32	20	36	1.88
44167458--44167482	8	3.1	8	100	0	50	24	0	0	76	0.80
44174323--44174464	44	3.2	44	88	2	205	27	16	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44176749--44177033	98	2.8	97	78	8	279	43	12	8	34	1.74
44176749--44177060	100	3.1	95	75	9	268	42	13	9	34	1.77
44179792--44179917	61	2.0	62	93	1	218	28	11	17	42	1.83
44180496--44180532	14	2.8	13	92	8	58	13	0	40	45	1.43
44180653--44180968	94	3.4	94	84	6	407	40	4	18	37	1.70
44181005--44181290	126	2.3	126	92	0	473	31	19	23	25	1.98
44183843--44183946	11	9.7	11	70	20	53	47	0	27	24	1.58
44183845--44183948	22	4.5	22	70	16	75	48	0	27	23	1.57
44183833--44183934	51	2.0	51	96	0	186	46	0	27	25	1.60
44184348--44184395	9	5.4	9	87	7	55	29	0	4	66	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218