genome.fa.s23.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  152  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46199748--46199992	46	5.3	46	83	2	312	28	12	18	40	1.87
46199748--46200000	92	2.7	92	91	0	407	29	12	17	40	1.86
46200799--46200858	30	2.0	31	83	9	79	20	38	0	41	1.52
46201854--46201881	11	2.5	11	100	0	56	0	0	53	46	1.00
46202479--46202600	42	2.9	42	90	2	183	39	2	0	58	1.12
46202579--46202618	21	1.9	21	89	0	62	37	2	0	60	1.11
46202578--46202637	22	2.8	21	80	14	61	41	1	1	55	1.20
46203740--46203835	31	3.1	31	95	3	174	31	9	13	45	1.75
46204374--46204471	46	2.2	45	90	5	153	68	9	13	9	1.39
46208681--46208706	3	8.7	3	100	0	52	30	0	0	69	0.89
46208795--46208890	31	3.1	31	95	3	174	31	9	13	45	1.75
46210961--46211017	13	4.9	13	68	27	56	49	1	0	49	1.11
46210976--46211062	19	4.8	18	73	12	88	42	4	0	52	1.21
46214020--46214300	23	12.0	23	67	18	100	40	17	11	31	1.85
46214021--46214191	71	2.4	70	78	11	172	38	18	12	30	1.88
46214071--46214208	73	1.9	72	82	8	172	38	18	13	30	1.88
46214148--46214313	45	3.6	45	90	6	262	43	14	11	30	1.81
46214663--46214697	15	2.3	15	90	9	54	51	22	0	25	1.48
46215340--46215455	43	2.7	43	84	12	166	27	30	20	21	1.98
46221487--46221512	13	2.0	13	100	0	52	46	7	23	23	1.78
46224387--46224435	25	2.0	25	95	0	89	46	8	16	28	1.75
46232340--46232507	83	2.0	83	96	0	309	36	16	22	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46238301--46238350	23	2.2	22	80	13	57	36	8	12	44	1.71
46242251--46242319	17	3.8	18	78	12	61	34	0	1	63	1.03
46242273--46242319	12	3.1	16	75	25	57	31	0	2	65	1.04
46246077--46246116	21	1.9	21	89	0	62	15	32	22	30	1.94
46250250--46250282	11	2.8	12	81	9	50	6	15	3	75	1.11
46255944--46256009	31	2.1	31	83	5	80	72	6	10	10	1.27
46257627--46257979	87	4.1	87	88	0	490	30	22	22	24	1.99
46258186--46258287	44	2.3	44	83	3	125	31	19	28	20	1.97
46258210--46258522	44	7.2	44	68	9	131	30	21	23	24	1.99
46258077--46258522	217	2.1	217	90	0	703	29	20	24	25	1.99
46270942--46271018	9	7.0	10	73	26	59	79	2	14	3	0.99
46270942--46271016	24	3.2	24	78	12	70	80	2	13	4	0.97
46270942--46271024	12	7.3	12	67	24	56	78	2	14	4	1.02
46270958--46271024	21	3.2	21	73	21	68	77	1	16	4	1.00
46272037--46272137	6	16.5	6	68	10	53	72	2	17	6	1.20
46272037--46272084	17	2.8	17	75	12	53	75	6	12	6	1.19
46272090--46272143	14	3.9	14	76	16	58	74	0	20	5	1.02
46272093--46272149	14	4.2	13	75	16	53	73	0	17	8	1.07
46272092--46272149	27	2.1	27	87	6	82	72	0	18	8	1.10
46272023--46272129	12	9.0	12	70	23	50	70	2	17	9	1.27
46272146--46272208	33	1.9	33	84	12	85	53	6	26	12	1.62
46286243--46286283	15	2.8	14	85	10	55	73	9	9	7	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46290281--46290340	18	3.3	18	76	19	54	26	3	0	70	1.03
46295437--46295470	17	2.0	17	88	0	50	58	2	8	29	1.43
46301432--46301481	18	2.6	19	81	6	57	20	26	2	52	1.57
46338972--46338997	13	2.0	13	100	0	52	30	15	0	53	1.42
46340243--46340295	27	2.0	27	82	14	65	58	3	0	37	1.16
46350133--46350294	41	4.0	41	83	7	168	33	26	18	20	1.96
46350133--46350290	82	1.9	82	83	5	203	33	26	18	20	1.96
46357927--46358046	41	2.9	41	88	2	161	35	25	17	21	1.95
46361588--46361657	27	2.6	27	95	2	122	31	28	12	27	1.93
46369641--46369710	27	2.6	27	95	2	113	31	28	12	27	1.93
46369641--46369738	28	3.5	28	90	2	135	31	28	13	26	1.94
46374005--46374092	30	2.9	30	79	12	99	37	18	15	28	1.92
46375212--46375273	30	2.0	31	84	9	83	35	14	1	48	1.54
46376992--46377038	22	2.1	22	96	0	85	61	0	6	31	1.21
46377586--46377665	39	2.1	39	97	0	151	32	25	18	23	1.97
46388230--46388472	50	4.8	50	88	0	342	26	21	30	21	1.98
46390530--46390578	18	2.8	16	80	20	53	73	0	6	20	1.04
46390569--46390611	21	2.0	22	86	4	61	72	4	4	18	1.20
46393079--46393111	16	2.0	17	88	5	50	45	3	12	39	1.57
46405296--46405334	21	1.9	20	84	5	51	38	2	0	58	1.12
46405287--46405396	56	2.0	56	100	0	220	34	4	3	57	1.37
46405352--46405390	21	1.9	20	84	5	51	38	2	0	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46407559--46407621	32	2.0	32	84	3	83	44	7	19	28	1.78
46411973--46412020	21	2.3	21	82	10	64	29	29	27	14	1.95
46414502--46414548	23	2.1	21	81	14	51	25	2	25	46	1.64
46415486--46415533	18	2.7	18	80	6	53	16	18	29	35	1.93
46419553--46419653	31	3.3	30	77	13	116	53	3	0	41	1.26
46419552--46419679	61	2.1	61	92	0	211	51	4	1	42	1.32
46439493--46439605	43	2.6	43	87	2	156	29	22	19	29	1.98
46439612--46439729	43	2.7	43	77	2	121	31	16	20	31	1.95
46440029--46440154	66	1.9	65	81	12	150	15	24	17	42	1.87
46445991--46446033	16	2.7	15	89	10	68	16	0	2	81	0.79
46449658--46449692	10	3.4	10	88	4	52	85	11	2	0	0.69
46450130--46450178	18	2.7	18	84	12	57	81	4	12	2	0.91
46450145--46450185	12	3.3	12	83	6	55	80	2	17	0	0.82
46450130--46450186	13	4.5	13	80	6	64	80	3	14	1	0.92
46450130--46450186	25	2.3	25	84	6	80	80	3	14	1	0.92
46450519--46450714	108	1.8	108	85	2	277	26	16	9	46	1.78
46451157--46451295	44	3.2	43	69	17	124	28	23	22	26	1.99
46451158--46451937	88	8.9	88	84	2	880	27	22	24	25	2.00
46451388--46451690	44	6.9	43	66	10	166	27	24	24	23	2.00
46452016--46452200	95	1.9	95	88	4	275	28	20	22	28	1.98
46452217--46453213	40	23.8	40	80	11	936	34	23	20	22	1.97
46452213--46453234	84	12.2	84	87	5	1139	34	23	20	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46453919--46453962	18	2.5	17	80	16	54	11	9	2	77	1.08
46454747--46454800	7	8.0	7	80	12	51	14	0	1	83	0.73
46454748--46454800	17	3.2	16	84	7	70	13	0	1	84	0.69
46454751--46454795	23	1.9	23	90	4	72	13	0	2	84	0.72
46456196--46456263	35	1.9	35	93	0	118	38	5	10	45	1.63
46457114--46457164	25	2.1	23	82	7	57	23	13	5	56	1.59
46457321--46457357	19	1.9	19	88	0	56	70	5	0	24	1.08
46458147--46458173	7	3.9	7	100	0	54	59	0	0	40	0.98
46459807--46459926	40	3.0	40	83	3	125	20	20	20	39	1.93
46464057--46464099	21	2.0	21	82	8	52	13	16	13	55	1.69
46472654--46472709	21	2.7	21	88	0	85	26	8	35	28	1.87
46474985--46475022	7	5.4	7	90	0	58	42	7	28	21	1.81
46474985--46475022	14	2.7	14	95	0	67	42	7	28	21	1.81
46474980--46475022	21	2.0	21	90	0	68	39	9	27	23	1.85
46474948--46475073	65	1.9	65	91	0	207	34	15	23	27	1.94
46474999--46475221	51	4.4	51	88	1	315	34	14	21	28	1.93
46481646--46481684	14	2.8	14	88	0	60	46	7	25	20	1.77
46481597--46481720	65	1.9	65	94	0	221	35	14	22	27	1.93
46481662--46481821	44	3.5	43	83	13	203	33	14	23	28	1.94
46481711--46481821	50	2.2	51	88	1	170	33	14	24	27	1.94
46484186--46484557	46	8.6	45	81	12	442	34	14	22	28	1.93
46484270--46484425	36	4.1	36	77	15	168	37	12	20	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46484224--46484557	82	4.0	81	85	7	429	34	14	22	28	1.93
46484186--46484557	128	2.9	126	77	8	412	34	14	22	28	1.93
46492990--46493776	114	6.9	114	95	0	1403	32	15	26	25	1.96
46494874--46494921	21	2.3	21	85	0	60	60	0	2	37	1.09
46495597--46495637	17	2.3	19	83	8	59	29	46	2	21	1.64
46497450--46497683	9	25.8	9	75	6	204	48	16	2	31	1.61
46497450--46497683	91	2.6	91	87	2	328	48	16	2	31	1.61
46497505--46497704	91	2.2	91	87	1	258	49	18	2	30	1.61
46503550--46503747	44	4.9	43	80	15	260	20	20	22	36	1.95
46503650--46503712	31	2.0	31	93	0	108	14	19	23	42	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218