genome.fa.s23.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  159  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48339357--48339758	186	2.2	186	87	4	582	25	20	26	27	1.99
48339547--48340000	112	4.0	112	85	4	574	26	21	25	26	2.00
48339543--48340000	225	2.0	225	85	5	615	26	21	25	26	2.00
48339134--48339983	411	2.1	411	85	3	1167	26	21	25	26	1.99
48340226--48340286	23	2.7	23	87	7	81	19	0	45	34	1.51
48340214--48340289	7	10.4	7	72	13	55	17	0	42	40	1.49
48344259--48344489	43	5.4	43	83	4	277	19	20	30	29	1.97
48345364--48345397	17	2.0	17	94	0	59	44	50	0	5	1.26
48350001--48350034	17	2.0	17	94	0	59	44	50	0	5	1.26
48351513--48351580	16	4.2	16	92	0	109	29	0	35	35	1.58
48351561--48351670	45	2.6	41	78	9	116	32	5	29	32	1.80
48351796--48351837	15	2.7	16	82	14	52	52	2	0	45	1.13
48351805--48351846	15	2.9	15	82	10	52	52	0	0	47	1.00
48354850--48354875	13	2.0	13	100	0	52	15	38	7	38	1.76
48366150--48366194	20	2.2	20	84	8	54	24	2	4	68	1.19
48372777--48373168	206	1.9	206	86	1	552	22	21	29	26	1.99
48379240--48379327	43	2.0	43	100	0	176	26	15	19	38	1.92
48380516--48380567	18	2.8	18	82	5	59	78	7	1	11	1.02
48380509--48380555	6	7.8	6	92	0	67	76	4	2	17	1.04
48382214--48382280	17	3.8	17	72	4	53	67	1	2	28	1.14
48395067--48395110	18	2.5	18	74	3	54	54	9	2	34	1.44
48396343--48396410	30	2.3	30	97	2	129	20	11	8	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48397078--48397135	28	2.1	28	100	0	116	25	10	24	39	1.87
48398759--48398788	12	2.6	11	90	10	51	66	0	3	30	1.07
48400460--48400790	44	7.7	43	72	13	259	26	21	21	29	1.99
48400452--48400872	44	9.8	42	69	15	211	26	21	21	30	1.98
48400460--48400872	85	4.8	85	72	14	285	26	21	21	30	1.98
48400450--48400872	129	3.3	129	90	0	666	26	21	21	30	1.98
48400880--48401613	199	3.7	199	90	0	1040	26	21	21	30	1.98
48400873--48401601	50	14.6	50	66	6	258	26	21	21	30	1.98
48401908--48401965	24	2.4	24	85	5	73	32	22	10	34	1.88
48402850--48402893	11	3.8	12	85	14	65	0	9	4	86	0.70
48405964--48406015	19	2.7	20	82	5	63	46	11	17	25	1.81
48408100--48408137	19	1.9	19	89	5	58	68	0	5	26	1.11
48408116--48408148	12	2.8	12	86	4	50	66	0	3	30	1.06
48415678--48415730	23	2.4	22	76	20	56	9	18	1	69	1.25
48418472--48418522	26	1.9	27	84	4	68	64	1	25	7	1.31
48418517--48418567	22	2.4	21	75	15	50	70	1	17	9	1.24
48419919--48419945	10	2.7	10	100	0	54	18	0	0	81	0.69
48424401--48424476	23	3.3	23	70	17	75	18	3	18	59	1.53
48424401--48424490	47	1.9	47	88	4	137	17	4	16	61	1.51
48424964--48425023	15	4.0	15	80	0	66	21	6	30	41	1.79
48429042--48429098	25	2.3	25	87	0	87	17	3	15	63	1.45
48430885--48430925	3	13.7	3	89	0	64	2	29	0	68	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48441439--48441658	44	4.8	45	72	16	150	30	17	21	29	1.96
48441388--48441602	94	2.3	94	88	1	315	30	18	21	30	1.97
48441423--48441571	50	3.1	49	72	21	143	28	16	24	30	1.97
48441488--48441865	138	2.7	138	80	2	427	32	18	20	28	1.96
48441763--48441960	94	2.1	94	83	2	245	31	18	21	28	1.97
48442024--48442172	50	3.1	48	67	14	110	34	17	19	28	1.94
48441947--48442239	94	3.1	94	81	3	304	32	18	19	29	1.96
48441625--48442217	232	2.6	232	82	3	676	32	17	21	28	1.96
48441981--48442267	94	3.1	92	81	6	308	33	17	20	28	1.95
48442001--48442360	94	3.8	94	78	6	291	34	17	20	27	1.95
48443423--48443505	37	2.2	37	91	0	139	24	22	20	32	1.98
48445160--48445185	13	2.0	13	100	0	52	46	0	0	53	1.00
48446802--48446849	14	3.0	16	82	17	64	52	0	2	45	1.12
48462284--48462481	27	7.4	27	82	6	242	36	14	16	32	1.89
48462278--48462511	54	4.4	54	88	3	332	36	15	16	31	1.90
48462284--48462511	81	2.8	79	77	10	255	36	14	16	32	1.90
48462284--48462508	27	8.4	27	81	7	208	36	15	16	32	1.90
48467611--48467650	21	1.9	21	89	0	62	77	2	0	20	0.88
48470181--48470248	26	2.4	29	75	20	72	60	2	7	29	1.39
48473717--48473746	2	15.0	2	100	0	60	50	0	0	50	1.00
48474212--48474279	26	2.4	29	75	20	72	60	2	7	29	1.39
48476018--48476495	175	2.7	174	85	5	612	24	23	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48476014--48476495	88	5.5	88	89	2	606	24	23	22	29	1.99
48484995--48485062	26	2.4	29	75	20	72	60	2	7	29	1.39
48486795--48487208	88	4.8	87	89	3	473	24	23	22	29	1.99
48487007--48487146	44	3.2	45	67	11	126	23	24	21	30	1.99
48487039--48487177	44	3.2	44	66	15	124	28	25	20	25	1.99
48487052--48487189	43	3.2	43	66	15	120	25	26	21	27	1.99
48490840--48490956	27	4.3	29	80	11	124	39	22	17	21	1.92
48490832--48490957	54	2.3	53	79	11	148	38	21	19	21	1.94
48491116--48491175	26	2.3	26	85	2	75	15	20	23	41	1.89
48491129--48491204	26	2.9	26	84	0	89	15	19	23	40	1.90
48497127--48497300	27	6.4	27	80	7	160	39	21	20	18	1.92
48497127--48497301	81	2.2	81	84	6	230	39	21	20	18	1.93
48497449--48497547	26	3.8	26	82	2	74	16	23	25	35	1.95
48497481--48497550	26	2.7	26	93	0	113	15	24	24	35	1.94
48498177--48498215	17	2.3	17	90	0	69	43	15	15	25	1.86
48520347--48520531	99	1.9	99	84	4	248	30	10	22	36	1.88
48522597--48522669	29	2.5	28	80	10	76	12	5	8	73	1.22
48522633--48522678	17	2.7	18	81	18	55	6	4	10	78	1.08
48523885--48523944	12	4.8	12	80	8	75	16	1	11	70	1.25
48523866--48523944	38	2.1	38	100	0	158	17	2	12	67	1.34
48526398--48526438	20	2.0	20	95	0	73	39	31	4	24	1.76
48528206--48528242	17	2.2	18	85	9	51	10	8	0	81	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48541314--48541425	44	2.5	43	90	5	170	25	23	22	28	1.99
48541352--48541448	44	2.2	44	85	3	124	29	20	20	28	1.98
48544194--48544223	10	3.0	10	90	0	51	53	0	0	46	1.00
48545738--48545902	82	2.0	82	96	0	303	37	6	10	45	1.65
48545978--48546043	19	3.5	19	79	4	89	50	1	10	37	1.47
48546452--48546542	27	3.4	27	95	3	157	47	2	8	41	1.47
48548917--48548957	22	1.9	21	85	14	57	48	17	4	29	1.67
48553702--48553734	14	2.3	15	89	5	50	78	6	3	12	1.04
48553696--48553738	15	2.9	15	82	10	52	79	6	2	11	1.02
48555383--48555435	27	1.9	28	84	3	72	11	18	22	47	1.81
48561218--48562572	511	2.6	519	87	3	1949	32	25	15	26	1.95
48562219--48562263	19	2.4	19	100	0	90	13	40	33	13	1.83
48562719--48562762	10	4.4	10	82	8	54	81	9	0	9	0.87
48566741--48566783	17	2.6	16	80	20	52	27	16	4	51	1.64
48567752--48567835	22	3.8	21	81	10	87	40	22	1	35	1.62
48567807--48567865	30	2.0	30	93	0	100	32	33	0	33	1.58
48567837--48567878	22	1.9	22	90	0	66	33	33	0	33	1.58
48570253--48570565	28	11.7	28	81	14	378	47	19	0	31	1.56
48570272--48570531	23	10.3	23	77	18	241	48	19	0	32	1.52
48570272--48570519	51	4.8	51	90	5	342	47	18	0	33	1.52
48570253--48570550	51	5.7	51	87	9	321	47	19	0	32	1.54
48573769--48574031	123	2.1	124	87	2	386	31	23	15	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48574741--48574788	20	2.5	20	83	10	55	58	4	0	37	1.18
48577360--48577397	19	2.0	19	100	0	76	36	15	26	21	1.93
48577869--48577996	57	2.2	59	84	5	170	49	7	17	25	1.73
48583534--48583614	42	1.9	42	89	0	126	18	25	32	23	1.97
48586572--48586641	19	3.5	19	75	13	52	72	0	8	18	1.09
48587658--48587925	136	2.0	134	91	1	428	30	6	23	39	1.80
48597256--48597295	19	2.0	20	85	4	55	25	0	5	70	1.08
48597793--48597832	20	2.0	20	90	0	62	47	2	7	42	1.45
48598392--48598447	28	2.0	28	96	0	103	53	5	10	30	1.58
48599119--48599183	11	5.8	12	81	15	77	24	32	1	41	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218