genome.fa.s23.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  38  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11941591--11941616	5	5.2	5	100	0	52	19	19	19	42	1.90
11945366--11945499	66	2.0	66	92	0	223	30	23	11	34	1.90
11950912--11950954	20	2.1	21	86	4	61	48	6	18	25	1.73
11950917--11950959	20	2.2	20	83	8	52	53	6	16	23	1.67
11952640--11952731	36	2.5	36	79	8	105	10	25	4	59	1.49
11953691--11953725	16	2.2	16	89	0	52	34	11	0	54	1.37
11957376--11957640	139	1.9	140	91	2	435	47	14	23	14	1.81
11957809--11958133	159	2.0	159	94	0	569	29	13	12	44	1.80
11964715--11964754	19	2.0	20	85	4	55	27	0	2	70	1.01
11977001--11977032	15	2.1	16	94	5	57	46	0	0	53	1.00
11977432--11977539	15	7.2	15	69	12	78	44	7	20	27	1.78
11977426--11977549	30	4.1	30	89	1	185	43	6	22	27	1.77
11982124--11982231	15	7.2	15	67	12	78	44	7	22	25	1.79
11982118--11982241	30	4.1	30	93	1	203	43	6	24	25	1.78
11987376--11987487	55	2.0	55	100	0	224	34	16	16	33	1.91
11994786--11994823	20	1.9	20	88	0	58	28	2	21	47	1.64
11994956--11995033	40	2.0	40	89	0	120	35	21	20	21	1.96
11994956--11995053	40	2.5	40	82	0	115	37	23	20	18	1.94
11995081--11995399	41	7.8	40	81	2	323	24	19	25	30	1.98
11995080--11995399	82	3.9	82	84	1	356	24	19	25	30	1.98
11995080--11995399	123	2.6	123	82	2	381	24	19	25	30	1.98
11995796--11995828	14	2.3	15	94	5	59	30	0	33	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11995999--11996052	21	2.6	21	76	8	56	20	0	38	40	1.53
11996142--11996184	7	6.1	7	83	0	50	25	0	46	27	1.53
12001467--12001626	86	1.9	86	82	2	205	28	17	24	30	1.97
12001459--12001626	43	3.9	43	80	4	153	29	17	24	28	1.98
12010262--12010290	14	2.0	15	93	6	51	41	0	0	58	0.98
12021357--12021532	45	3.9	44	75	8	131	42	15	19	22	1.88
12021362--12021532	90	1.9	90	84	2	227	42	15	19	22	1.89
12021747--12021820	27	2.7	27	85	6	114	37	16	27	18	1.92
12025583--12025654	36	2.0	36	97	2	137	36	8	11	44	1.70
12026387--12026432	24	1.9	24	82	8	58	50	0	17	32	1.47
12031836--12031905	29	2.4	28	78	7	68	50	10	18	21	1.76
12037447--12037486	18	2.2	18	90	0	62	65	2	5	27	1.27
12039831--12039884	22	2.5	22	84	6	65	22	22	22	33	1.97
12043267--12043316	23	2.2	23	92	7	84	64	4	2	30	1.23
12045885--12045932	24	2.0	24	83	0	60	35	6	14	43	1.71
12046296--12046432	71	1.9	71	83	5	179	30	18	20	30	1.96
12051256--12051311	28	2.0	27	86	3	76	33	10	0	55	1.35
12054019--12054092	33	2.2	33	85	0	94	47	16	20	16	1.83
12054040--12054104	33	2.0	32	90	3	103	41	20	23	15	1.89
12054710--12054749	9	4.4	9	93	0	71	42	22	10	25	1.84
12065225--12065318	49	1.9	49	88	0	143	35	14	19	30	1.92
12067398--12067567	95	1.8	91	86	7	243	42	14	16	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12069948--12070011	32	2.0	32	90	3	103	18	21	10	48	1.79
12072102--12072157	28	2.0	28	82	6	69	42	0	3	53	1.18
12088078--12088118	21	2.0	21	90	0	64	19	29	21	29	1.98
12089854--12089909	26	2.2	26	100	0	112	30	7	25	37	1.82
12098978--12099171	41	4.7	41	91	0	280	19	23	29	28	1.98
12099573--12099617	14	3.1	14	87	9	56	26	0	33	40	1.57
12099683--12099833	79	1.9	82	88	4	236	27	1	28	43	1.63
12101157--12101188	16	2.0	16	100	0	64	0	12	25	62	1.30
12105034--12105260	43	5.3	43	82	2	233	22	15	30	30	1.95
12113085--12113403	108	3.0	108	90	0	503	31	16	21	29	1.96
12113535--12113568	17	2.0	17	100	0	68	58	5	5	29	1.45
12117102--12117131	2	15.0	2	100	0	60	50	50	0	0	1.00
12120702--12120765	31	2.1	31	91	2	103	25	3	14	57	1.51
12122834--12122869	17	2.1	18	89	5	56	47	0	0	52	1.00
12123401--12123450	3	16.3	3	83	4	64	58	0	40	2	1.10
12123629--12123820	82	2.4	81	83	7	214	32	2	14	50	1.56
12123662--12123820	82	1.9	84	88	5	243	35	3	13	48	1.58
12128974--12129882	314	2.9	313	87	4	1297	30	10	7	51	1.64
12128979--12129882	158	5.8	157	90	4	1275	30	10	7	51	1.64
12130209--12130246	19	2.0	19	94	0	67	71	5	0	23	1.07
12130260--12130360	10	9.2	10	68	18	58	0	32	0	67	0.91
12130297--12130358	5	12.4	5	72	6	54	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12130265--12130366	35	2.9	35	85	4	118	0	34	0	64	1.00
12130653--12130702	26	1.9	26	88	8	75	26	2	4	68	1.18
12134511--12134568	30	1.9	31	93	6	102	39	0	41	18	1.51
12134620--12134683	9	7.1	9	89	0	101	29	9	14	46	1.75
12134620--12134683	27	2.4	27	94	0	119	29	9	14	46	1.75
12135681--12135731	23	2.2	24	79	10	61	54	5	3	35	1.43
12135614--12135951	185	1.8	185	94	2	608	55	5	7	31	1.50
12135866--12135916	23	2.2	24	79	10	61	54	5	3	35	1.43
12136177--12136224	21	2.4	18	75	24	51	62	8	4	25	1.41
12137996--12138123	44	2.9	44	77	5	134	25	22	23	28	1.99
12138138--12138588	51	8.8	51	91	0	713	27	25	17	28	1.98
12140494--12140540	19	2.5	20	86	6	62	44	8	19	27	1.79
12142792--12142841	23	2.3	21	78	15	57	52	6	12	30	1.62
12143133--12143194	22	2.8	22	87	0	97	35	24	0	40	1.55
12143197--12143245	22	2.2	21	80	16	55	36	32	0	30	1.58
12143143--12143242	52	1.9	52	87	0	146	33	30	0	37	1.58
12143280--12143335	29	2.0	29	89	10	89	39	0	1	58	1.08
12143281--12143342	29	2.1	29	85	11	83	38	0	1	59	1.07
12147771--12148052	126	2.2	125	87	6	401	31	21	17	29	1.96
12148273--12148331	29	2.1	28	84	9	77	45	11	13	28	1.79
12154821--12154845	2	12.5	2	100	0	50	52	48	0	0	1.00
12168226--12168289	31	2.1	31	82	5	76	45	12	3	39	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12169508--12170041	125	4.3	126	85	2	711	29	18	22	29	1.97
12169508--12170041	250	2.1	249	90	0	843	29	18	22	29	1.97
12173224--12173363	44	3.2	44	79	9	110	22	0	26	50	1.55
12173273--12173336	29	2.2	30	80	2	76	21	1	25	51	1.57
12173305--12173427	7	17.4	7	67	19	51	20	0	30	48	1.50
12173302--12173405	21	4.9	21	84	8	129	21	0	30	48	1.51
12173362--12173442	35	2.3	35	85	6	101	16	0	33	50	1.45
12173245--12174308	22	49.8	20	68	20	184	21	0	28	48	1.56
12173550--12174308	22	34.8	21	69	17	204	21	0	27	49	1.55
12173550--12173638	28	3.4	26	76	17	87	21	0	24	53	1.45
12173550--12173924	44	8.5	44	72	15	226	21	0	27	50	1.54
12173550--12173660	50	2.2	50	88	3	161	22	0	24	53	1.47
12173587--12173895	7	43.4	7	66	18	70	22	0	27	49	1.54
12173550--12173680	50	2.6	50	83	4	131	22	0	26	51	1.49
12173702--12173764	29	2.2	29	83	11	76	22	1	28	47	1.60
12173752--12173867	15	7.9	15	71	12	62	18	0	26	54	1.44
12173916--12173975	20	3.0	20	85	2	75	28	1	26	43	1.65
12174008--12174077	29	2.4	28	81	6	77	18	0	34	47	1.49
12174851--12174890	18	2.2	18	86	0	53	42	5	30	22	1.75
12176787--12176830	11	3.8	12	85	8	65	43	0	31	25	1.55
12178689--12178749	26	2.3	26	94	0	104	21	0	21	57	1.41
12179968--12180006	16	2.4	16	86	0	51	51	2	5	41	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12179939--12179994	22	2.5	23	85	2	78	55	1	0	42	1.10
12181338--12181391	19	2.8	19	94	0	99	37	16	9	37	1.81
12185664--12185706	12	3.6	12	93	6	70	27	6	32	32	1.84
12187578--12187692	24	4.7	24	70	15	83	34	18	26	20	1.95
12191289--12191337	25	1.9	26	91	4	82	38	10	20	30	1.86
12195377--12195405	3	10.0	3	92	7	51	0	34	0	65	0.93
12199180--12199622	221	2.0	221	98	0	850	26	15	23	34	1.94
12203166--12203224	29	2.0	29	93	0	100	38	11	0	49	1.40
12207758--12207805	5	9.4	5	80	13	53	20	22	14	41	1.89
12211330--12211370	3	13.7	3	94	0	73	34	2	0	63	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218