genome.fa.s23.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  188  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55936966--55937015	15	3.4	15	71	15	50	26	8	28	38	1.84
55938988--55939025	20	1.9	20	100	0	76	42	10	15	31	1.81
55939035--55939342	107	2.9	105	88	4	429	33	15	13	37	1.87
55941316--55941345	14	2.1	14	93	0	51	23	0	6	70	1.11
55945281--55945307	3	9.0	3	100	0	54	33	66	0	0	0.92
55947067--55947205	60	2.3	61	85	5	183	38	5	12	42	1.67
55971853--55972009	44	3.6	44	93	0	251	31	14	21	33	1.93
55972011--55972109	47	2.1	48	84	5	130	20	14	30	35	1.92
55975700--55975751	21	2.4	21	72	15	52	15	1	7	75	1.12
55986556--55986606	26	2.0	26	96	0	93	52	3	19	23	1.62
55986864--55986909	22	2.1	23	84	15	62	43	0	4	52	1.21
55989495--55989535	20	2.0	20	100	0	82	24	14	4	56	1.58
55997549--55997585	9	4.1	9	85	0	56	29	8	13	48	1.71
55999268--55999345	40	2.0	39	97	2	147	51	8	2	37	1.47
56002784--56002888	3	35.3	3	68	17	51	26	6	1	64	1.28
56003061--56003097	2	18.5	2	94	0	65	45	0	0	54	1.00
56003059--56003142	37	2.2	37	85	8	105	40	2	0	57	1.12
56003261--56003304	18	2.5	18	88	3	63	15	4	6	72	1.22
56009018--56009061	20	2.2	20	91	0	70	25	6	36	31	1.82
56010028--56010063	16	2.4	16	86	13	51	63	0	0	36	0.94
56010019--56010065	23	2.0	23	84	8	60	61	0	2	36	1.08
56025184--56025398	109	2.0	109	98	0	412	31	17	17	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56029588--56029634	23	2.0	24	83	4	60	44	4	27	23	1.72
56034155--56034195	22	1.9	22	85	5	57	60	12	4	21	1.50
56035901--56035932	15	2.1	16	94	5	57	6	21	0	71	1.07
56036952--56037001	12	4.6	11	79	18	52	16	4	8	72	1.24
56039591--56039637	24	2.0	24	83	8	60	12	4	19	63	1.44
56043362--56043416	28	2.0	28	88	0	83	14	16	9	60	1.59
56045098--56045131	14	2.4	14	95	0	59	14	5	41	38	1.70
56047012--56047048	6	5.8	6	90	9	56	83	0	2	13	0.74
56047010--56047051	7	6.3	7	88	5	61	80	0	2	16	0.81
56047012--56047051	13	3.1	13	86	13	64	82	0	2	15	0.77
56049455--56049498	3	14.7	3	90	9	72	70	0	0	29	0.88
56049438--56049495	20	2.8	21	84	10	75	74	1	0	24	0.92
56049445--56049498	19	2.8	20	91	5	85	72	1	0	25	0.95
56049445--56049518	33	2.2	33	80	17	82	70	2	2	24	1.14
56049678--56049759	3	26.7	3	85	9	67	57	7	2	32	1.39
56049716--56049759	23	1.9	23	86	9	63	61	0	4	34	1.16
56050426--56050465	15	2.6	16	80	4	55	82	5	5	7	0.94
56051121--56051293	91	1.9	91	83	3	226	25	20	25	28	1.99
56051439--56053203	87	20.2	87	90	1	2323	24	23	23	28	1.99
56052049--56052277	44	5.2	44	60	14	114	24	23	22	29	1.99
56054428--56054472	23	1.9	24	86	4	65	8	8	4	77	1.10
56055273--56055317	23	1.9	23	86	4	63	13	2	8	75	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56056578--56056607	15	2.0	15	93	0	51	36	13	26	23	1.92
56058518--56058543	3	8.7	3	100	0	52	69	0	0	30	0.89
56058770--56058819	24	2.0	24	84	7	64	64	6	18	12	1.47
56059425--56059463	15	2.6	15	79	0	51	82	5	5	7	0.96
56061178--56061214	6	5.8	6	90	9	56	83	0	2	13	0.74
56061176--56061217	7	6.3	7	88	5	61	80	0	2	16	0.81
56061178--56061217	13	3.1	13	86	13	64	82	0	2	15	0.77
56064830--56064888	27	2.1	28	81	3	66	44	10	1	44	1.48
56067050--56067074	13	1.9	13	100	0	50	24	8	0	68	1.16
56068883--56068929	19	2.5	19	86	6	60	25	19	10	44	1.82
56071767--56071869	17	5.8	17	76	20	63	75	0	21	2	0.93
56071783--56071871	6	14.7	6	72	15	67	76	0	20	3	0.93
56071771--56071840	20	3.7	20	80	14	69	75	0	21	2	0.93
56071784--56071871	10	8.4	11	71	16	71	76	0	20	3	0.93
56071767--56071871	14	6.8	16	73	19	80	76	0	20	2	0.92
56073175--56074073	89	10.1	89	85	0	1080	29	23	23	23	1.99
56074067--56074550	132	3.7	132	91	1	765	30	16	24	28	1.96
56074675--56074861	88	2.1	88	92	1	304	32	19	20	27	1.97
56080029--56080058	14	2.1	14	93	0	51	16	30	36	16	1.91
56082820--56082881	31	2.1	30	84	6	81	50	8	1	40	1.42
56091941--56091987	22	2.2	22	84	3	60	38	0	4	57	1.18
56094511--56094563	27	2.0	27	92	0	88	18	13	16	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56097715--56097753	20	1.9	21	89	5	62	17	5	7	69	1.32
56100249--56100301	22	2.2	25	87	9	76	64	0	0	35	0.94
56104883--56104974	42	2.2	42	86	3	123	25	15	17	42	1.88
56107808--56108056	50	4.8	50	82	4	282	20	28	22	28	1.99
56107807--56108056	100	2.4	103	85	4	317	21	28	22	28	1.99
56108151--56108182	13	2.5	13	94	0	55	56	12	0	31	1.37
56108394--56108450	30	1.9	30	89	3	89	31	24	3	40	1.72
56111621--56111647	14	1.9	14	100	0	54	25	37	14	22	1.93
56112670--56112777	37	2.9	38	73	20	104	42	3	3	50	1.38
56112816--56112872	17	3.5	17	79	11	66	43	1	0	54	1.10
56117152--56117190	18	2.2	17	86	13	53	33	0	20	46	1.51
56117416--56117513	23	4.3	23	85	0	124	23	18	23	34	1.96
56123597--56123643	22	2.1	22	100	0	94	53	4	27	14	1.60
56124594--56124624	16	1.9	16	93	0	53	16	9	3	70	1.26
56127228--56127272	11	3.8	11	86	13	63	46	2	0	51	1.13
56133100--56133128	5	5.8	5	100	0	58	20	17	20	41	1.90
56158361--56158414	23	2.3	23	81	6	65	29	14	1	53	1.52
56158859--56158896	19	2.0	19	85	10	51	60	7	0	31	1.25
56158918--56159021	18	5.4	18	71	23	61	0	31	0	67	0.97
56158925--56159079	12	13.0	12	72	15	69	0	31	0	67	0.95
56158950--56159079	4	31.2	4	75	20	99	0	30	0	68	0.95
56158904--56159058	41	3.7	42	77	17	144	1	32	0	66	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56158954--56159078	34	3.7	35	78	14	113	0	30	0	68	0.95
56158954--56159080	35	3.6	35	83	10	136	0	31	0	67	0.96
56159122--56159196	27	2.8	27	85	0	105	16	29	29	25	1.96
56159273--56159340	28	2.5	28	95	4	122	47	0	13	39	1.43
56166247--56166271	12	2.1	12	100	0	50	40	28	0	32	1.57
56170073--56170146	29	2.5	29	86	4	94	48	14	14	21	1.80
56170955--56170991	9	4.1	9	89	0	56	48	13	8	29	1.71
56171360--56171414	18	3.1	17	80	12	58	23	36	0	40	1.55
56171915--56171940	5	5.2	5	100	0	52	23	19	19	38	1.93
56172860--56173021	81	2.0	81	95	0	288	42	13	21	22	1.88
56173348--56173429	29	2.7	31	70	7	71	41	24	7	26	1.81
56173532--56173564	17	1.9	17	93	0	57	75	3	0	21	0.93
56174151--56174244	21	4.7	21	74	18	60	34	3	2	60	1.24
56174173--56174254	18	4.3	18	70	13	58	34	2	1	62	1.16
56185894--56185990	49	2.0	50	83	2	124	32	25	15	25	1.95
56204612--56204675	27	2.2	29	83	8	78	40	9	32	17	1.81
56210523--56210590	10	7.1	10	72	12	54	63	1	1	33	1.13
56213371--56213414	18	2.5	18	88	3	63	72	6	4	15	1.22
56213531--56213600	19	3.6	21	72	20	53	57	0	2	40	1.14
56213767--56213877	3	37.3	3	72	16	63	64	1	6	27	1.27
56214501--56214531	14	2.2	14	94	0	53	83	0	9	6	0.79
56214503--56214540	16	2.4	16	86	8	51	81	0	10	7	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56215095--56215139	22	2.0	24	86	8	67	46	4	11	37	1.60
56215567--56215599	15	2.3	15	89	5	50	57	6	0	36	1.23
56220255--56220295	21	2.0	21	90	0	64	29	21	29	19	1.98
56223820--56223893	20	3.9	19	76	13	64	66	1	1	31	1.09
56223920--56223958	21	1.9	20	89	5	60	58	0	2	38	1.12
56225787--56225831	22	2.0	24	86	8	67	46	4	11	37	1.60
56229139--56229194	20	2.8	20	78	2	60	60	1	1	35	1.17
56229254--56229307	9	5.9	9	77	12	56	55	1	1	40	1.21
56229246--56229280	18	1.9	18	88	0	52	60	0	0	40	0.97
56229336--56229384	22	2.3	21	78	3	53	55	4	2	38	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218