genome.fa.s23.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  143  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43641924--43642089	37	4.4	38	65	14	101	41	6	9	42	1.62
43641838--43642182	114	3.0	114	97	0	638	41	7	9	41	1.66
43642182--43642738	22	25.5	22	83	6	652	24	0	28	45	1.56
43642182--43642738	43	12.7	43	81	6	629	24	0	28	45	1.56
43642956--43643002	21	2.2	21	85	7	60	2	27	40	29	1.68
43644134--43644171	20	1.9	20	84	10	51	55	7	2	34	1.43
43645104--43645204	51	2.0	52	82	9	127	47	1	24	25	1.62
43645171--43645207	12	3.2	12	85	14	51	43	0	35	21	1.53
43652658--43652716	28	2.1	28	100	0	118	28	28	8	33	1.87
43656439--43656484	11	4.2	11	86	8	58	23	28	0	47	1.52
43656439--43656481	10	4.0	10	82	11	50	23	30	0	46	1.52
43658281--43658323	18	2.4	18	88	0	59	18	30	9	41	1.82
43658744--43659012	49	5.5	49	96	0	466	42	2	8	46	1.46
43662075--43662734	125	5.3	125	91	1	1047	29	20	17	32	1.95
43662913--43662961	16	3.2	16	72	13	50	48	38	0	12	1.41
43665576--43665608	17	1.9	17	93	0	57	27	3	3	66	1.21
43666265--43666406	74	1.9	72	83	7	178	30	18	16	33	1.93
43670101--43670170	6	11.7	6	73	11	54	74	1	21	2	1.03
43670129--43670166	20	1.9	20	88	0	58	73	0	26	0	0.83
43670095--43670167	17	4.6	16	70	13	51	75	1	20	2	1.00
43671380--43671969	89	6.6	89	91	0	901	28	25	24	22	1.99
43671988--43672219	100	2.3	100	85	1	313	34	19	19	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43672312--43672406	45	2.1	44	84	1	118	31	17	20	30	1.96
43672250--43672505	44	5.8	44	73	12	150	32	17	23	27	1.96
43672442--43672843	129	3.1	127	84	4	522	31	22	20	25	1.98
43672455--43672771	44	7.4	44	66	14	142	30	22	22	24	1.99
43675780--43675818	19	2.1	18	85	4	51	28	2	5	64	1.28
43677806--43677945	72	1.9	73	91	4	230	29	20	17	33	1.95
43681773--43681850	38	2.1	37	83	7	95	65	1	3	29	1.18
43683412--43683479	24	2.9	23	80	10	59	58	0	1	39	1.07
43685905--43685940	14	2.3	17	86	13	51	33	16	0	50	1.46
43696032--43696275	40	6.2	39	78	5	238	32	18	18	30	1.95
43696032--43696282	81	3.1	77	80	7	270	31	19	18	30	1.96
43696033--43696258	121	1.9	118	83	4	292	33	19	18	28	1.96
43696312--43696421	40	2.8	40	84	5	150	29	23	24	22	1.99
43696666--43696713	26	1.9	25	91	8	80	43	8	0	47	1.33
43696781--43696850	27	2.6	27	88	4	106	28	28	27	15	1.96
43696889--43697039	4	37.0	4	78	16	116	68	0	30	0	0.94
43696901--43697050	40	4.0	36	76	16	142	67	0	31	1	0.99
43696946--43697057	39	3.1	34	81	14	109	69	0	27	1	1.04
43702862--43702906	18	2.5	18	88	0	72	15	48	6	28	1.70
43703848--43703886	20	2.0	21	85	10	55	66	10	0	23	1.22
43704144--43704187	21	2.1	21	100	0	88	56	0	9	34	1.31
43707718--43707775	28	2.1	28	100	0	116	31	3	13	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43708009--43708106	43	2.4	42	80	11	105	30	18	23	27	1.98
43708031--43708172	43	3.3	43	87	2	178	21	15	28	34	1.94
43708160--43708266	34	3.1	34	94	0	178	30	19	16	32	1.94
43719957--43720086	43	3.0	43	74	16	133	32	28	16	22	1.96
43720195--43720267	34	2.1	35	82	2	85	45	15	6	32	1.72
43720660--43720732	34	2.1	35	82	2	85	45	15	6	32	1.72
43719968--43721365	465	3.0	465	99	0	2751	31	21	13	32	1.93
43721125--43721197	34	2.1	35	82	2	85	45	15	6	32	1.72
43726129--43726199	37	1.9	37	88	5	108	32	4	4	59	1.36
43727696--43727723	13	2.2	13	100	0	56	25	25	35	14	1.93
43731047--43731087	21	2.0	21	81	18	50	31	19	26	21	1.97
43732196--43732223	13	2.2	13	100	0	56	25	25	35	14	1.93
43735318--43735399	31	2.7	30	81	5	94	54	3	1	40	1.26
43735358--43735384	12	2.2	12	100	0	54	48	0	0	51	1.00
43735318--43735401	29	2.8	29	82	7	89	53	3	1	41	1.26
43745690--43745735	19	2.5	19	92	3	76	36	4	13	45	1.63
43753609--43753732	25	5.0	25	68	11	85	29	19	25	25	1.98
43753609--43753732	50	2.5	50	85	1	160	29	19	25	25	1.98
43763697--43763743	24	2.0	23	87	4	67	44	25	12	17	1.84
43767417--43767482	33	2.0	33	88	8	100	13	42	3	40	1.60
43767689--43767720	12	2.8	12	95	4	57	0	18	0	81	0.70
43772617--43772683	34	1.9	35	87	3	100	49	11	5	32	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43777169--43777206	19	2.0	19	100	0	76	31	10	26	31	1.90
43778018--43778192	77	2.3	77	93	3	298	57	8	7	26	1.54
43778106--43778332	91	2.6	88	82	9	281	57	10	6	25	1.56
43780679--43780919	103	2.3	102	88	5	358	52	17	0	29	1.50
43784491--43784531	17	2.5	17	88	4	57	46	0	0	53	1.00
43784419--43784715	119	2.5	121	93	3	503	41	1	5	51	1.33
43784582--43784635	18	3.1	17	84	7	56	44	0	3	51	1.19
43784659--43784729	23	3.1	22	80	11	65	39	0	5	54	1.24
43784674--43784729	23	2.4	23	79	8	69	41	0	5	53	1.24
43784977--43785030	16	3.4	16	89	0	81	24	33	3	38	1.73
43785076--43785120	18	2.5	19	79	17	51	64	17	0	17	1.29
43785288--43785402	60	1.9	60	96	0	212	53	13	0	33	1.46
43785575--43785615	3	14.3	3	82	10	50	2	26	0	70	0.99
43785559--43785628	14	5.0	14	74	16	56	1	30	0	68	0.98
43785575--43785628	17	3.2	17	76	5	56	1	31	0	66	1.02
43785935--43785972	20	1.9	20	94	0	67	55	0	0	44	0.99
43787789--43787877	44	2.0	44	100	0	178	22	13	20	43	1.86
43792416--43792560	74	2.0	74	86	2	202	25	22	25	26	2.00
43792460--43793245	114	6.9	113	87	2	1083	23	21	27	26	1.99
43793152--43793322	72	2.4	72	89	3	254	26	22	25	25	2.00
43793605--43793654	15	3.4	15	80	2	57	22	0	46	32	1.52
43793624--43793674	22	2.3	23	82	3	59	27	1	43	27	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43793880--43793921	21	2.0	22	85	4	59	19	0	42	38	1.51
43793904--43793952	7	6.9	7	76	4	53	20	0	46	32	1.51
43793900--43793942	15	2.9	15	86	3	61	18	0	46	34	1.50
43793887--43793952	22	3.1	22	76	4	64	19	0	46	33	1.50
43794748--43794935	103	1.8	105	90	2	308	48	11	11	28	1.73
43794748--43794957	103	2.0	105	87	1	307	47	10	11	30	1.74
43797657--43797758	45	2.3	45	100	0	204	21	11	20	46	1.83
43798596--43798846	43	5.8	43	78	7	242	24	17	28	29	1.97
43806712--43806751	20	2.1	18	86	9	53	47	10	5	37	1.59
43811279--43811350	36	2.0	36	91	2	119	31	27	8	31	1.86
43813133--43813204	36	2.0	36	91	2	119	31	27	8	31	1.86
43818661--43818704	24	1.9	24	81	9	56	27	22	4	45	1.72
43823721--43824006	30	9.6	30	80	11	215	31	8	16	44	1.77
43823750--43823805	26	2.2	26	86	0	76	32	7	12	48	1.68
43823721--43824006	60	4.8	60	83	2	328	31	8	16	44	1.77
43823721--43824006	90	3.2	89	84	3	353	31	8	16	44	1.77
43826266--43826405	49	2.9	49	90	4	228	32	25	15	27	1.95
43829448--43829486	18	2.2	17	86	13	53	28	0	23	48	1.51
43829712--43829810	23	4.3	23	86	0	117	26	20	24	29	1.99
43829712--43829810	46	2.2	46	86	0	135	26	20	24	29	1.99
43832429--43832484	29	1.9	29	85	7	78	46	5	3	44	1.43
43848692--43848755	31	2.1	31	85	11	87	37	1	14	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43848938--43848984	21	2.3	21	85	10	62	36	0	8	55	1.31
43849001--43849046	18	2.6	18	86	3	58	43	0	2	54	1.12
43848977--43849093	55	2.1	54	82	7	137	43	0	4	51	1.27
43849000--43849114	48	2.7	41	76	18	108	45	0	2	52	1.14
43849205--43849297	45	2.1	44	92	6	152	36	25	4	33	1.76
43849279--43849332	16	3.4	16	84	0	81	29	25	5	38	1.79
43866016--43866057	15	2.7	15	92	3	66	50	19	14	16	1.79
43868217--43868277	19	3.3	18	73	13	52	47	4	4	42	1.46
43871165--43871214	25	2.0	24	84	3	64	18	26	22	34	1.96
43871383--43871445	25	2.5	25	76	7	65	17	23	23	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218