genome.fa.s23.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  109  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31991919--31991983	20	3.2	20	67	4	58	18	30	15	35	1.92
31991882--31992087	41	5.0	41	86	0	250	21	28	14	35	1.93
31998405--31998432	14	2.0	14	100	0	56	35	7	0	57	1.26
32004076--32004154	37	2.1	37	88	0	113	25	30	18	25	1.98
32004273--32004878	47	12.7	47	94	2	1009	29	29	9	32	1.88
32004273--32004878	145	4.2	141	93	3	1009	29	29	9	32	1.88
32010000--32010108	37	3.0	37	90	2	177	35	16	22	24	1.95
32011364--32011506	48	2.9	49	90	3	216	23	13	30	32	1.94
32014664--32014772	37	3.0	37	90	2	177	35	16	22	24	1.95
32016978--32017012	16	2.1	17	89	5	54	40	0	37	22	1.55
32016983--32017018	16	2.1	18	90	10	58	30	0	41	27	1.56
32027298--32027331	18	1.9	18	88	5	52	41	0	35	23	1.55
32055518--32055546	12	2.3	13	94	5	51	65	6	6	20	1.40
32059168--32059201	16	2.1	16	94	0	59	23	5	8	61	1.47
32068971--32069273	40	7.6	40	89	2	396	26	28	20	24	1.99
32076535--32076837	40	7.6	40	89	2	371	26	27	20	25	1.99
32079861--32079890	8	3.9	8	91	8	53	23	0	0	76	0.78
32082190--32082248	30	2.0	30	87	12	86	40	13	15	30	1.86
32082478--32082663	51	3.7	50	78	3	203	24	16	26	31	1.96
32082481--32082664	101	1.8	101	88	3	271	25	16	26	32	1.96
32083689--32083789	49	2.1	49	86	3	141	26	16	27	28	1.97
32085197--32085221	8	3.1	8	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32094785--32095395	28	21.8	28	88	0	871	30	22	21	24	1.99
32095505--32095581	26	3.0	26	77	7	84	35	22	22	20	1.96
32095724--32096092	27	13.7	27	77	8	185	22	17	20	39	1.92
32095733--32096069	80	4.2	80	85	1	415	21	17	21	40	1.92
32095733--32096092	54	6.7	54	85	3	376	21	17	20	39	1.92
32097874--32097918	23	2.0	23	90	0	72	40	26	0	33	1.57
32108161--32108229	21	3.3	21	85	0	84	39	8	28	23	1.84
32110882--32110949	22	3.1	22	71	0	64	33	14	26	25	1.94
32110891--32110957	22	3.0	22	71	0	62	34	20	23	20	1.97
32111313--32111426	60	1.9	60	83	0	147	21	21	18	39	1.93
32111389--32111434	20	2.3	21	88	11	78	21	19	21	36	1.95
32118280--32118326	23	2.1	21	84	7	58	48	31	2	17	1.58
32121348--32121411	25	2.6	25	85	2	76	34	17	21	26	1.95
32134737--32135198	50	9.2	50	69	2	300	30	20	22	27	1.98
32134687--32135198	100	5.1	100	88	0	718	29	20	22	27	1.98
32135861--32135903	9	4.6	9	80	11	50	37	32	18	11	1.87
32138694--32138838	74	1.9	77	87	5	215	28	18	26	25	1.98
32138647--32138866	40	5.6	39	83	10	229	26	21	27	25	1.99
32146620--32146845	80	2.8	81	82	10	268	27	21	26	24	1.99
32146659--32146845	40	4.7	40	92	2	254	29	20	25	24	1.99
32146659--32146878	80	2.8	79	82	10	218	30	20	25	24	1.99
32150363--32150407	11	3.8	12	73	26	51	73	0	13	13	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32150370--32150409	8	5.2	8	85	14	50	75	0	12	12	1.06
32150377--32150417	8	5.7	7	88	11	57	73	0	14	12	1.11
32150378--32150408	13	2.3	13	94	5	53	74	0	12	12	1.08
32150377--32150417	14	2.9	14	85	14	57	73	0	14	12	1.11
32150362--32150409	21	2.2	21	89	10	71	75	0	12	12	1.06
32150362--32150424	21	3.0	21	81	11	67	71	0	14	14	1.15
32151906--32152607	50	13.9	50	66	5	323	28	21	23	26	1.99
32151920--32152640	100	7.1	100	86	3	922	28	21	22	26	1.99
32151920--32152639	309	2.4	300	83	4	938	29	21	22	26	1.99
32161004--32161054	8	6.4	8	93	0	75	49	1	3	45	1.32
32164011--32164037	12	2.2	12	100	0	54	29	7	0	62	1.22
32187069--32187133	31	2.1	31	91	5	105	36	10	21	30	1.88
32190111--32190157	23	2.0	23	87	0	67	44	17	10	27	1.81
32203733--32203768	14	2.6	14	100	0	72	55	8	8	27	1.58
32207127--32207159	14	2.3	15	89	5	50	27	15	30	27	1.96
32217745--32217799	27	2.0	27	100	0	110	43	29	0	27	1.55
32217747--32217806	27	2.2	27	93	0	102	45	31	1	21	1.62
32218864--32218914	25	2.0	25	100	0	102	31	23	17	27	1.97
32233598--32233676	33	2.4	34	80	6	81	20	25	32	21	1.97
32235511--32235549	20	2.0	20	84	0	51	43	12	2	41	1.56
32241842--32241942	27	3.5	27	76	17	112	35	1	16	45	1.59
32242177--32242226	14	3.5	14	78	5	55	72	0	2	26	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32242186--32242224	15	2.5	15	87	4	51	79	0	2	17	0.84
32242172--32242224	8	7.0	8	77	16	51	73	0	1	24	0.93
32242616--32242745	36	3.5	37	73	8	113	8	27	14	49	1.72
32242640--32242737	36	2.6	37	82	3	117	7	28	14	50	1.69
32245013--32245101	37	2.4	37	86	3	126	40	14	11	33	1.82
32245159--32245274	33	3.5	33	84	4	171	45	14	6	32	1.72
32248331--32248422	47	1.9	48	93	2	159	46	4	6	42	1.49
32248638--32248686	15	3.4	15	83	10	59	42	0	2	55	1.11
32248755--32248806	15	3.6	15	80	12	56	44	0	1	53	1.11
32248515--32249040	119	4.4	120	95	2	936	42	2	5	49	1.38
32248870--32248903	17	2.0	17	88	11	52	44	0	0	55	0.99
32248989--32249023	18	2.0	17	88	5	52	45	0	0	54	0.99
32251682--32251734	18	3.0	18	88	2	81	50	3	37	7	1.49
32252549--32252578	15	2.0	15	93	0	51	53	30	0	16	1.44
32252541--32252585	22	2.0	22	86	0	63	53	28	0	17	1.44
32256491--32256529	18	2.2	17	86	4	51	48	0	2	48	1.15
32263209--32263255	24	2.0	24	100	0	94	25	31	8	34	1.86
32264108--32264437	43	7.7	43	82	4	357	27	30	16	25	1.97
32264102--32264431	127	2.6	129	82	4	357	28	29	16	25	1.97
32265870--32265923	2	27.0	2	100	0	108	50	0	50	0	1.00
32266705--32266779	39	1.9	39	88	0	114	36	24	10	29	1.89
32268045--32268452	203	2.0	204	93	1	703	39	7	3	49	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32272351--32272393	18	2.4	18	85	11	54	51	4	2	41	1.35
32272796--32273070	137	2.0	137	99	0	541	33	16	14	35	1.89
32276159--32276201	19	2.3	18	88	7	68	25	2	0	72	0.97
32279577--32279657	25	3.2	25	80	7	92	40	13	11	34	1.80
32280316--32280385	35	2.0	35	100	0	140	34	11	28	25	1.91
32280888--32280932	23	2.0	23	95	0	81	22	17	6	53	1.67
32281620--32281723	54	1.9	54	94	0	181	36	17	16	29	1.92
32283838--32283909	25	2.8	25	77	6	65	40	15	12	31	1.84
32287453--32287529	31	2.3	34	84	8	97	54	1	5	38	1.31
32292771--32292796	9	2.9	9	100	0	52	92	0	7	0	0.39
32298187--32298213	10	2.7	10	100	0	54	14	0	7	77	0.97
32299757--32299989	50	4.7	50	79	1	245	27	21	28	23	1.99
32307152--32307392	50	4.8	50	83	3	245	28	20	29	21	1.98
32310084--32310157	26	3.2	26	60	28	65	31	10	12	45	1.76
32310084--32310172	44	2.0	44	100	0	178	31	11	11	46	1.75
32310721--32310777	26	2.2	26	78	9	64	59	21	7	12	1.56
32310969--32311027	22	2.7	22	89	0	82	23	11	23	40	1.88
32314721--32314750	12	2.5	12	94	0	51	30	40	23	6	1.80
32316141--32316174	10	3.3	10	91	4	50	23	2	14	58	1.50
32317884--32317935	25	2.1	25	92	0	86	34	11	9	44	1.73
32319760--32320001	121	2.0	121	100	0	484	35	18	13	33	1.89
32320217--32320285	31	2.3	28	76	21	77	39	10	1	49	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32320297--32320401	52	2.0	52	98	0	201	36	20	4	38	1.74
32326110--32326149	9	4.4	9	87	0	53	22	60	2	15	1.47
32333002--32333058	24	2.3	26	82	8	66	22	19	17	40	1.91
32334455--32334552	43	2.3	43	89	3	144	21	31	26	20	1.98
32335573--32335619	23	2.0	23	100	0	94	40	4	12	42	1.63
32337780--32337860	3	26.3	3	73	14	67	64	2	2	30	1.20
32344660--32344744	35	2.4	36	84	3	95	41	29	12	16	1.86
32346083--32346310	33	6.4	33	72	18	125	32	28	17	21	1.96
32346141--32346277	42	3.5	42	71	20	141	32	27	16	23	1.95
32346108--32346314	75	2.8	75	93	0	351	32	28	16	22	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218