genome.fa.s23.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  125  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37926869--37926935	27	2.4	27	85	7	80	74	2	10	11	1.17
37927784--37927822	15	2.4	15	87	12	51	66	2	20	10	1.33
37929300--37929354	20	2.8	20	88	0	83	25	29	16	29	1.97
37935959--37936055	30	3.2	30	68	8	81	28	15	27	27	1.96
37939017--37939052	15	2.4	15	100	0	72	16	11	5	66	1.40
37939096--37939127	10	3.0	11	90	9	57	18	0	9	71	1.12
37939442--37939535	46	2.0	46	91	4	154	35	21	18	25	1.95
37942622--37942665	22	2.0	22	90	0	70	25	34	4	36	1.76
37945385--37945450	21	3.0	22	86	4	80	30	4	30	34	1.78
37950497--37950593	30	3.2	30	72	8	99	28	16	26	27	1.97
37952736--37952766	12	2.6	12	100	0	62	25	16	12	45	1.83
37952827--37952876	6	8.2	6	81	16	50	2	20	2	76	0.99
37952816--37952886	37	1.9	37	86	11	101	2	18	2	76	1.04
37952812--37952872	16	3.8	16	77	14	63	3	19	1	75	1.03
37953766--37953836	26	2.7	26	84	2	79	9	8	4	77	1.11
37953793--37953826	14	2.3	15	95	5	61	5	5	2	85	0.83
37955551--37955647	30	3.2	30	72	8	99	28	16	26	27	1.97
37960898--37960934	4	9.0	4	88	5	56	24	0	0	75	0.80
37967813--37967858	20	2.3	20	84	0	56	23	19	17	39	1.92
37967815--37967878	30	2.1	30	88	5	94	21	20	18	39	1.93
37969478--37969502	12	2.1	12	100	0	50	68	0	8	24	1.16
37970718--37970778	32	1.9	32	83	6	79	54	6	26	13	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37972574--37972638	31	2.1	30	83	8	78	21	20	16	41	1.90
37994877--37994923	20	2.3	20	85	0	67	31	34	10	23	1.89
37996415--37996439	12	2.1	12	100	0	50	76	8	0	16	1.02
38000407--38000446	18	2.2	18	86	4	53	12	27	0	60	1.33
38001497--38001536	15	2.7	15	96	0	71	17	12	2	67	1.33
38003232--38003386	12	13.6	12	67	23	59	69	1	18	10	1.27
38003254--38003389	6	22.7	6	66	8	62	70	2	17	9	1.24
38003263--38003389	29	4.4	29	70	9	98	70	1	18	10	1.24
38003404--38003466	33	1.9	33	84	12	85	53	6	26	12	1.62
38008839--38008866	4	7.0	4	100	0	56	25	0	0	75	0.81
38012613--38012645	4	8.0	4	96	3	57	24	0	0	75	0.80
38020518--38020572	20	2.8	20	88	0	83	29	16	29	25	1.97
38028404--38028667	45	5.9	45	93	0	420	39	15	19	25	1.91
38033992--38034019	4	7.0	4	100	0	56	75	0	0	25	0.81
38034777--38034807	4	8.0	4	92	7	55	22	0	0	77	0.77
38037247--38037510	45	5.9	45	93	0	420	39	15	19	25	1.91
38044098--38044361	45	5.9	45	93	0	420	39	15	19	25	1.91
38046741--38046769	10	2.7	11	94	5	51	13	3	0	82	0.79
38049413--38049459	20	2.3	20	81	0	58	29	34	12	23	1.92
38049964--38050010	20	2.3	20	85	0	67	29	36	12	21	1.91
38051705--38051748	22	2.0	22	95	0	79	25	36	4	34	1.76
38053138--38053205	12	5.2	13	72	19	52	75	1	17	5	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38053137--38053205	27	2.6	26	80	8	77	73	2	17	5	1.15
38057463--38057508	20	2.3	20	84	0	65	30	34	13	21	1.91
38063013--38063047	18	1.9	18	88	11	54	22	20	0	57	1.41
38063031--38063067	12	3.0	12	88	7	56	13	18	0	67	1.23
38063977--38064050	13	5.7	13	76	13	64	16	8	2	72	1.19
38063978--38064039	28	2.3	28	80	5	74	16	8	1	74	1.13
38063977--38064050	12	5.8	12	74	14	67	16	8	2	72	1.19
38064000--38064030	16	1.9	16	100	0	62	25	9	0	64	1.24
38065971--38066003	10	3.3	10	100	0	66	30	30	9	30	1.88
38077050--38077102	23	2.4	22	76	20	56	9	18	1	69	1.25
38080911--38080953	20	2.2	20	86	0	59	53	2	30	13	1.53
38086752--38086796	20	2.2	20	84	7	56	24	33	11	31	1.90
38089586--38089660	36	2.1	36	97	0	141	40	12	9	38	1.75
38090946--38091013	34	2.0	34	97	0	127	36	20	16	26	1.93
38092129--38092175	23	2.1	23	84	7	62	51	12	4	31	1.59
38102859--38102905	20	2.3	20	85	0	67	29	36	12	21	1.91
38104395--38104420	12	2.2	12	100	0	52	76	7	0	15	0.99
38105575--38105680	48	2.2	47	85	9	135	59	1	24	14	1.45
38108673--38108733	12	4.9	12	92	7	104	19	8	0	72	1.10
38112914--38112941	4	7.0	4	100	0	56	75	0	0	25	0.81
38114287--38114338	23	2.3	22	75	21	54	9	23	1	65	1.32
38114332--38114370	18	2.2	18	85	0	51	12	23	2	61	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38118337--38118392	15	3.6	15	95	4	94	21	12	5	60	1.51
38118430--38118465	13	2.8	13	100	0	72	16	0	5	77	0.94
38119517--38119541	12	2.1	12	100	0	50	24	8	8	60	1.52
38122528--38122575	13	3.6	13	80	2	60	75	4	4	16	1.12
38122616--38122670	13	3.8	13	74	21	56	76	1	14	7	1.08
38122622--38122688	28	2.3	29	84	5	82	76	2	10	10	1.13
38122613--38122670	31	2.0	28	86	10	80	74	1	13	10	1.15
38123498--38123543	20	2.2	20	84	3	56	65	0	26	8	1.21
38123550--38123585	6	6.0	6	93	0	54	33	0	27	38	1.57
38124531--38127489	991	3.0	991	99	0	5822	40	16	16	26	1.89
38128172--38128220	22	2.2	23	82	10	66	32	8	18	40	1.80
38129048--38129099	24	2.3	23	87	9	79	78	3	9	7	1.06
38132692--38132745	20	2.7	20	82	0	63	24	20	18	37	1.94
38132692--38132765	30	2.5	30	86	8	98	21	20	18	39	1.93
38132692--38132756	20	3.2	20	71	16	53	23	21	16	38	1.93
38136169--38136217	22	2.2	23	82	10	66	30	8	18	42	1.79
38137962--38138008	20	2.3	20	81	0	58	29	34	12	23	1.92
38142109--38142155	20	2.3	20	85	0	67	21	12	36	29	1.91
38143815--38143920	48	2.2	48	85	9	137	14	24	1	59	1.45
38143896--38144020	17	7.1	17	70	15	76	13	27	2	56	1.50
38146578--38146624	20	2.3	20	85	0	67	21	12	36	29	1.91
38152746--38152790	19	2.3	20	84	7	65	77	2	13	6	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38152795--38152838	15	2.8	15	86	13	54	65	0	27	6	1.17
38156612--38156717	48	2.2	48	86	9	146	59	1	23	15	1.46
38158379--38158425	20	2.3	20	85	0	67	29	36	12	21	1.91
38163673--38163772	51	1.9	52	93	2	175	27	18	22	33	1.96
38171602--38171667	21	3.0	22	84	4	71	28	4	31	34	1.78
38173243--38173297	20	2.8	20	78	10	67	23	20	16	40	1.91
38182546--38182594	10	4.9	10	78	9	55	26	30	16	26	1.97
38182546--38182592	20	2.3	20	89	7	69	25	31	17	25	1.97
38184511--38184575	20	3.0	21	76	17	55	4	20	6	69	1.28
38187676--38187768	46	2.0	46	93	4	161	24	18	21	35	1.95
38193799--38193851	23	2.4	22	76	20	56	9	18	1	69	1.25
38200057--38200100	22	2.0	22	95	0	79	34	4	36	25	1.76
38207570--38207625	24	2.4	23	72	3	58	23	3	32	41	1.71
38227623--38227670	10	4.9	9	78	16	51	29	16	33	20	1.95
38227623--38227670	20	2.4	20	89	0	78	29	16	33	20	1.95
38228578--38228640	21	3.0	21	90	6	92	30	6	33	30	1.82
38248082--38248118	12	3.0	13	88	7	51	70	13	5	10	1.32
38248098--38248133	15	2.4	15	95	0	63	80	5	0	13	0.88
38248086--38248146	13	4.5	13	84	8	68	75	6	1	16	1.09
38248186--38248225	15	2.6	15	96	4	71	62	5	12	20	1.48
38254435--38254489	20	2.8	20	82	0	74	25	27	16	30	1.96
38259865--38259898	12	2.8	12	90	4	50	11	23	0	64	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38262232--38262256	4	6.2	4	100	0	50	76	0	0	24	0.80
38263480--38263534	20	2.8	20	88	0	83	25	29	16	29	1.97
38269708--38269752	20	2.2	20	88	0	63	22	26	17	33	1.96
38272533--38272565	15	2.1	15	94	5	57	72	0	18	9	1.10
38278711--38278755	12	3.8	12	90	0	72	64	0	11	24	1.26
38278708--38278755	24	2.0	24	95	0	87	60	0	12	27	1.32
38282844--38282886	11	3.9	11	90	0	59	76	9	0	13	1.01
38282927--38282973	13	3.5	13	94	5	85	72	0	8	19	1.10
38282922--38282973	27	2.0	27	96	3	97	65	0	11	23	1.25
38287576--38287630	29	2.0	29	86	13	80	18	12	9	60	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218