genome.fa.s23.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  175  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52951525--52951576	24	2.2	24	85	0	68	53	9	3	32	1.51
52954762--52954814	22	2.5	22	78	3	63	41	28	20	9	1.83
52957473--52957503	9	3.4	9	90	0	53	25	12	22	38	1.90
52957555--52957591	9	4.1	9	85	0	56	48	13	8	29	1.71
52962840--52962866	9	3.0	9	100	0	54	44	11	0	44	1.39
52963863--52963916	27	2.0	27	92	0	90	18	33	7	40	1.78
52963866--52963923	27	2.1	27	87	0	80	22	31	6	39	1.80
52963987--52964064	15	5.2	15	68	11	61	44	7	20	26	1.78
52963983--52964064	30	2.7	30	92	0	128	46	7	20	25	1.76
52981479--52981549	29	2.4	30	85	2	99	52	5	8	33	1.55
52988786--52988865	26	3.2	26	63	33	66	40	16	15	28	1.88
52989627--52989892	142	1.9	142	86	3	383	40	20	14	23	1.90
52995366--52995444	27	3.0	27	72	5	81	53	2	0	44	1.14
53000358--53000684	90	3.6	90	87	1	451	26	6	14	52	1.66
53002486--53002545	24	2.6	23	82	10	68	21	11	1	65	1.34
53002533--53002591	16	3.6	17	75	24	56	20	8	3	67	1.31
53002540--53002591	16	3.2	15	82	15	59	17	9	3	69	1.31
53002613--53002732	5	22.4	5	72	18	73	29	17	0	52	1.50
53002621--53002703	11	7.7	11	74	16	68	31	18	0	50	1.47
53002601--53002732	23	6.1	22	68	19	82	29	17	0	52	1.50
53002634--53002732	28	3.4	28	82	12	101	29	16	1	53	1.49
53002634--53002732	33	3.2	33	76	14	118	29	16	1	53	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53002805--53002845	16	2.6	16	88	3	57	24	14	0	60	1.34
53003125--53003253	26	5.3	26	67	23	102	23	14	0	62	1.32
53003134--53003258	21	5.5	21	71	20	90	24	13	0	61	1.32
53003125--53003269	47	3.1	47	89	3	220	22	13	0	62	1.35
53003306--53003498	44	4.4	44	91	0	305	37	2	10	48	1.52
53006289--53006586	159	1.9	161	94	1	537	36	16	7	39	1.77
53006880--53007002	61	2.0	62	88	3	185	36	18	21	23	1.95
53014567--53014624	25	2.3	25	79	5	64	43	1	8	46	1.44
53014846--53014907	30	2.1	31	81	6	74	50	9	0	40	1.35
53018140--53018176	11	3.5	11	82	17	51	67	0	0	32	0.91
53018208--53018245	15	2.5	15	91	0	58	42	36	7	13	1.73
53018211--53018259	15	3.4	15	83	8	57	34	40	8	16	1.78
53021438--53021484	16	2.7	17	83	9	60	14	8	2	74	1.15
53026429--53026478	13	3.9	12	86	7	55	80	2	14	4	0.95
53027730--53027981	50	5.1	50	66	4	188	32	19	20	27	1.97
53027719--53028064	100	3.5	99	88	2	473	30	20	22	26	1.98
53027749--53028007	50	5.2	50	67	4	166	30	20	21	27	1.98
53028101--53028973	45	19.4	45	83	6	1065	29	17	22	30	1.96
53029065--53029160	50	1.9	50	80	4	113	32	19	16	31	1.94
53029181--53029549	44	8.6	43	73	10	251	31	23	19	25	1.98
53029181--53029549	85	4.3	85	73	12	306	31	23	19	25	1.98
53029174--53029565	129	3.0	128	87	1	552	31	23	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53030242--53030273	10	3.4	10	83	16	50	9	12	0	78	0.97
53030234--53030279	17	2.6	18	93	6	76	10	8	2	78	1.05
53035212--53035249	20	1.9	20	94	0	67	47	5	0	47	1.24
53039373--53039407	17	2.0	18	88	5	54	45	0	5	48	1.26
53040019--53040052	2	17.0	2	93	0	59	2	50	0	47	1.16
53044896--53044946	19	2.6	19	78	9	59	29	17	19	33	1.95
53046821--53046878	26	2.3	26	84	3	73	32	22	27	17	1.96
53046714--53046878	24	6.8	25	69	12	76	33	22	24	18	1.97
53049138--53049279	42	3.4	42	94	0	230	21	30	27	21	1.98
53050302--53050342	20	2.0	22	85	9	59	39	31	4	24	1.76
53051027--53051083	25	2.3	24	80	14	62	42	21	22	14	1.88
53051089--53051150	24	2.5	26	78	5	74	40	20	24	14	1.90
53054581--53054615	18	2.0	18	94	5	63	31	0	0	68	0.90
53056673--53056706	17	2.0	17	94	0	59	44	50	0	5	1.26
53061303--53061336	17	2.0	17	94	0	59	44	50	0	5	1.26
53064877--53064913	3	12.3	3	94	0	65	32	2	0	64	1.07
53066926--53066969	18	2.4	18	88	11	63	25	15	11	47	1.79
53066927--53066983	18	3.3	18	70	25	52	26	15	12	45	1.82
53069484--53069522	20	1.9	20	84	5	51	84	0	7	7	0.77
53070214--53070244	15	2.0	16	93	6	55	45	19	3	32	1.66
53070522--53071080	54	11.4	52	67	19	214	31	19	21	28	1.97
53070405--53070740	143	2.3	142	86	2	458	30	19	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53070533--53070937	197	2.1	197	90	2	636	30	19	21	28	1.97
53070758--53071117	44	7.7	45	65	15	149	30	20	22	26	1.98
53070718--53071162	143	3.1	143	88	2	678	30	20	22	26	1.98
53071097--53071378	132	2.1	133	87	0	404	29	18	25	25	1.98
53071371--53071426	28	2.0	28	92	0	94	37	16	32	14	1.88
53071379--53071438	28	2.1	28	87	0	84	40	18	28	13	1.88
53072820--53072853	3	11.3	3	87	0	50	32	5	0	61	1.20
53072971--53073026	6	8.7	6	76	18	51	16	5	0	78	0.92
53076209--53076392	38	4.7	37	71	17	140	44	1	3	51	1.27
53076256--53076409	18	8.9	18	66	18	76	42	0	2	54	1.19
53076191--53076666	120	4.0	120	95	0	758	42	1	5	51	1.32
53076504--53076559	15	4.1	13	76	14	51	42	0	1	55	1.10
53076508--53076550	15	2.8	16	79	10	54	44	0	2	53	1.13
53076619--53076660	15	2.9	15	82	10	52	47	0	0	52	1.00
53076886--53076937	16	3.2	16	94	0	95	36	36	0	26	1.57
53079706--53079748	4	10.8	4	100	0	86	25	0	23	51	1.49
53084001--53084052	27	1.9	27	96	0	95	38	13	0	48	1.43
53084868--53084922	16	3.4	16	75	9	58	47	1	34	16	1.57
53085288--53085317	2	15.0	2	92	0	51	50	3	0	46	1.18
53085686--53085727	18	2.4	17	81	14	50	16	14	0	69	1.20
53085992--53086017	11	2.4	11	100	0	52	38	0	0	61	0.96
53087508--53088120	298	2.1	297	84	6	787	36	13	8	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53087508--53088248	298	2.5	297	81	8	780	35	13	8	41	1.76
53092426--53092478	26	2.0	26	100	0	106	37	18	16	26	1.93
53092680--53092765	29	2.9	29	82	1	100	36	45	10	8	1.68
53092826--53092863	18	2.1	18	90	0	58	21	26	10	42	1.85
53096521--53097062	125	4.3	126	85	1	714	28	19	18	34	1.95
53097099--53097378	96	2.9	96	86	6	383	40	17	2	39	1.63
53097099--53097397	95	3.1	94	84	6	370	40	18	3	38	1.66
53103695--53103745	24	2.1	24	88	0	75	37	3	9	49	1.55
53107409--53107484	24	3.4	22	80	12	75	42	14	23	19	1.88
53110894--53110928	17	2.1	16	89	5	52	77	2	5	14	1.07
53112100--53112140	4	10.0	4	85	15	57	21	4	0	73	1.02
53123931--53123961	14	2.2	14	94	0	53	38	0	12	48	1.42
53124338--53124542	103	2.0	103	94	0	356	40	12	24	21	1.88
53141242--53141267	12	2.2	12	100	0	52	42	26	7	23	1.81
53144999--53145035	19	1.9	19	89	10	58	37	0	8	54	1.30
53161493--53161528	18	1.9	18	88	5	54	47	5	25	22	1.73
53163663--53163706	18	2.3	19	81	18	56	65	0	29	4	1.12
53163771--53163907	66	2.0	68	83	6	172	57	2	32	6	1.39
53170698--53170733	18	2.1	16	90	10	54	33	5	0	61	1.19
53170773--53170806	2	17.5	2	87	6	52	44	0	2	52	1.16
53174582--53174606	4	6.2	4	100	0	50	76	24	0	0	0.80
53175536--53175591	21	2.6	21	80	2	58	66	12	8	12	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53179683--53179717	17	2.1	17	89	10	54	62	0	2	34	1.10
53181924--53181956	16	2.0	17	94	5	59	69	6	6	18	1.30
53183337--53183365	12	2.3	13	94	5	51	51	0	27	20	1.47
53183517--53183606	26	3.3	27	86	9	121	41	11	17	30	1.84
53189165--53189858	346	2.0	346	95	0	1262	37	8	15	38	1.78
53192401--53192436	17	2.1	17	94	0	63	36	8	13	41	1.75
53197931--53198005	37	2.0	37	92	0	123	45	13	4	37	1.62
53197931--53198022	37	2.5	37	85	7	107	46	13	4	35	1.62
53198139--53198216	38	2.0	39	95	2	140	17	2	28	51	1.59
53199504--53199558	20	2.7	22	73	23	57	60	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218