genome.fa.s23.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  171  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51831493--51831532	20	2.0	20	95	0	71	37	0	0	62	0.95
51831956--51832012	29	2.0	29	82	6	71	45	3	1	49	1.29
51835885--51835915	15	2.1	15	100	0	62	41	12	19	25	1.87
51835989--51836016	2	14.0	2	100	0	56	50	0	0	50	1.00
51837343--51837383	20	2.0	20	95	0	73	39	9	2	48	1.49
51851944--51852088	71	2.0	71	100	0	290	37	11	23	28	1.89
51853029--51853236	91	2.3	91	91	0	326	45	2	3	48	1.35
51853029--51853167	47	3.0	44	68	18	122	45	2	5	46	1.39
51853140--51853211	26	2.6	28	84	8	85	41	0	4	54	1.20
51853061--51853204	47	3.1	47	69	16	138	43	1	4	51	1.29
51853069--51853211	44	3.2	43	68	16	119	44	1	3	50	1.27
51853252--51853544	120	2.4	120	90	3	448	42	3	5	49	1.40
51853356--51853541	54	3.2	53	66	24	124	44	2	5	47	1.37
51853648--51853682	18	2.0	17	88	5	52	45	0	0	54	0.99
51853481--51853795	155	2.0	157	93	1	544	47	5	3	43	1.43
51853843--51853937	45	2.1	45	84	1	120	33	25	6	34	1.81
51853916--51853953	16	2.4	16	95	0	67	28	31	0	39	1.57
51856120--51856194	35	2.1	35	80	4	80	34	14	12	38	1.83
51857573--51857629	24	2.3	24	84	6	78	24	8	15	50	1.72
51858589--51858719	66	2.0	66	95	0	235	31	11	22	35	1.89
51858715--51858760	24	1.9	24	100	0	92	39	15	17	28	1.90
51859028--51859246	102	2.2	102	96	0	404	42	0	4	52	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51859115--51859180	26	2.4	28	78	19	75	43	0	1	54	1.09
51859129--51859403	118	2.3	119	96	1	498	43	0	4	52	1.25
51859231--51859263	17	2.0	16	94	5	57	42	0	0	57	0.98
51859334--51859450	48	2.7	40	72	20	101	44	0	3	52	1.18
51859547--51859636	45	2.0	45	85	6	121	37	24	3	34	1.72
51859615--51859652	16	2.4	16	95	0	67	26	34	2	36	1.71
51869993--51870044	20	2.7	20	82	14	65	63	5	0	30	1.18
51872588--51872627	3	13.3	3	94	0	71	65	0	2	32	1.06
51881342--51881377	16	2.2	17	90	5	56	11	0	2	86	0.68
51885268--51885415	37	4.0	37	96	0	260	38	12	20	28	1.89
51889067--51889117	27	2.0	27	84	7	70	35	3	1	58	1.28
51890103--51890136	16	2.1	16	89	10	52	26	0	2	70	1.01
51893166--51893194	9	3.2	9	100	0	58	51	0	24	24	1.48
51897483--51897514	13	2.5	13	89	0	55	53	12	6	28	1.62
51897791--51897857	34	2.0	34	91	5	109	37	17	10	34	1.85
51901455--51901519	31	2.1	31	85	5	87	46	7	7	38	1.61
51906086--51906116	14	2.2	14	94	0	53	48	12	0	38	1.42
51907142--51907422	146	1.9	147	93	2	485	43	13	13	29	1.82
51909928--51909957	4	7.5	4	92	0	51	73	0	0	26	0.84
51911046--51911085	14	2.9	14	96	0	71	30	52	0	17	1.45
51911046--51911085	21	1.9	21	94	0	71	30	52	0	17	1.45
51911159--51911259	21	4.8	21	79	6	105	32	43	0	23	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51911194--51911266	7	10.4	7	96	0	101	31	45	0	23	1.53
51911556--51912236	114	6.0	114	94	0	1157	28	25	21	23	1.99
51913337--51913458	43	2.7	45	79	3	140	48	16	15	19	1.81
51914168--51914208	20	2.0	20	95	0	73	21	7	31	39	1.81
51921014--51921129	44	2.6	44	95	0	205	22	20	8	48	1.77
51923015--51923045	16	1.9	16	93	0	53	67	0	32	0	0.91
51927672--51927989	43	7.7	43	78	10	304	30	31	16	20	1.95
51929484--51929538	25	2.2	26	80	9	69	50	14	3	30	1.60
51939935--51940127	50	3.8	50	91	0	305	20	30	23	25	1.98
51940221--51940250	13	2.3	13	94	0	51	50	13	3	33	1.58
51943710--51943750	13	3.1	14	86	6	50	21	7	24	46	1.77
51943915--51943999	7	12.0	7	75	7	73	18	1	36	43	1.58
51945180--51945211	16	2.0	16	100	0	64	56	6	12	25	1.59
51946213--51946306	47	2.0	47	89	0	143	29	14	22	32	1.94
51946798--51947497	9	75.6	9	69	24	260	46	16	0	37	1.48
51946837--51946869	16	2.1	16	100	0	66	45	24	0	30	1.53
51946887--51947449	103	5.4	103	96	0	1000	46	15	0	37	1.48
51947390--51947465	16	4.8	16	72	15	77	43	23	0	32	1.54
51947581--51947616	19	1.9	18	94	5	63	47	11	2	38	1.54
51953107--51953304	87	2.3	87	84	6	251	39	16	30	13	1.87
51953260--51953325	21	3.1	21	82	0	78	33	12	45	9	1.73
51953635--51954062	43	10.1	42	88	2	513	22	21	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51954172--51954215	21	2.1	21	83	8	54	45	29	11	13	1.79
51957236--51957279	18	2.5	17	89	10	70	22	13	13	50	1.77
51957671--51957734	23	2.7	23	71	17	60	14	12	9	64	1.50
51962084--51962146	24	2.6	24	76	2	72	60	0	0	39	0.97
51962087--51962151	23	2.7	24	76	7	60	55	0	0	44	0.99
51965429--51965479	26	2.0	26	96	0	93	11	23	35	29	1.90
51965351--51965572	103	2.2	103	93	1	374	18	18	31	31	1.95
51965492--51965642	71	2.1	72	91	2	243	23	16	29	30	1.96
51972436--51972658	104	2.2	103	92	2	367	17	18	31	31	1.95
51972578--51972728	71	2.1	72	91	2	243	23	16	29	30	1.96
51979529--51979683	66	2.3	66	89	0	238	31	26	15	26	1.96
51979667--51979723	29	2.0	29	92	0	96	29	15	21	33	1.94
51979716--51979838	65	1.9	65	81	5	149	26	21	16	35	1.94
51979613--51979789	95	1.9	95	86	2	257	31	20	15	32	1.94
51982598--51982678	9	8.9	9	74	6	56	28	11	19	40	1.86
51982603--51982678	18	4.2	18	78	6	82	28	10	19	40	1.85
51982611--51982678	27	2.5	27	79	9	84	27	10	20	41	1.85
51983526--51983554	2	14.5	2	100	0	58	51	0	0	48	1.00
51983902--51983947	16	2.9	16	90	0	65	43	2	23	30	1.66
51984064--51984154	34	2.6	35	85	7	105	47	0	2	50	1.13
51984083--51984154	34	2.1	35	92	2	119	48	0	0	51	1.00
51984087--51984156	11	6.2	12	72	22	53	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51984097--51984155	23	2.6	23	81	7	68	44	0	0	55	0.99
51984107--51984158	12	4.4	12	73	22	56	44	0	0	55	0.99
51985952--51985987	19	1.9	19	88	5	56	13	11	0	75	1.06
51986246--51986314	31	2.2	31	97	0	129	39	17	11	31	1.85
51987819--51987861	23	2.0	21	86	9	59	58	4	30	6	1.45
51992763--51992805	23	2.0	21	86	9	59	58	4	30	6	1.45
52001457--52001496	13	3.1	13	85	0	53	27	10	22	40	1.86
52003077--52003131	27	2.0	27	96	0	101	38	9	3	49	1.52
52003696--52003730	12	2.8	12	91	4	52	42	11	8	37	1.72
52003764--52004011	123	2.0	122	97	1	471	41	7	19	31	1.79
52005891--52005929	9	4.5	8	82	17	51	69	0	0	30	0.89
52005890--52005927	17	2.1	17	90	9	58	65	0	0	34	0.93
52006407--52006445	21	1.9	20	84	5	51	30	2	0	66	1.05
52008485--52008539	23	2.4	23	96	0	101	34	12	21	30	1.91
52008598--52008643	9	5.1	9	94	0	83	45	13	10	30	1.77
52008997--52009042	18	2.6	17	80	19	51	21	32	0	45	1.52
52009669--52009694	5	5.2	5	100	0	52	19	19	19	42	1.90
52015654--52015855	32	6.6	32	73	15	133	27	3	17	51	1.62
52015659--52015855	91	2.2	91	95	0	349	27	3	17	51	1.62
52015702--52015852	59	2.5	59	77	11	153	26	4	17	51	1.64
52018072--52018180	44	2.5	44	81	3	103	19	16	11	52	1.74
52022605--52022661	28	2.0	29	93	6	98	42	1	0	56	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52022551--52022656	11	10.4	11	71	20	79	40	2	0	56	1.14
52026516--52026548	6	5.5	6	92	0	57	3	33	48	15	1.60
52026535--52026568	17	1.9	18	94	5	61	0	29	38	32	1.58
52030049--52030205	68	2.3	68	84	3	192	26	15	28	30	1.96
52030184--52030295	40	2.8	40	80	0	134	27	16	30	25	1.97
52030812--52030870	16	3.7	16	75	8	57	50	1	1	45	1.21
52030811--52030874	5	11.5	6	70	21	50	50	1	1	46	1.20
52035051--52035090	20	2.0	20	90	9	64	47	0	12	40	1.41
52036640--52037140	44	11.4	44	68	14	214	28	23	18	29	1.97
52036613--52037141	219	2.4	219	94	0	905	28	23	18	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218