genome.fa.s23.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  208  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61737221--61737263	11	3.8	12	80	20	56	41	0	32	25	1.56
61737705--61737778	36	2.1	36	97	0	139	24	17	10	47	1.79
61738195--61738242	14	3.4	15	75	18	50	45	4	4	45	1.41
61744059--61744108	17	2.7	20	78	18	70	10	0	44	46	1.37
61748697--61748746	17	2.7	20	78	18	70	10	0	44	46	1.37
61749483--61750703	614	2.0	606	92	3	2004	30	16	20	32	1.95
61758259--61758284	4	6.5	4	100	0	52	50	23	0	26	1.50
61759794--61759912	51	2.3	51	80	8	134	38	18	3	39	1.67
61760726--61760867	39	3.8	39	77	21	160	33	2	0	64	1.11
61760793--61760827	18	2.0	18	94	5	63	34	2	0	62	1.10
61760754--61760838	29	3.0	29	87	5	120	34	3	0	62	1.12
61770336--61770364	8	3.6	8	100	0	58	55	0	20	24	1.44
61790938--61790995	25	2.4	23	80	5	62	67	5	5	22	1.31
61791413--61791451	19	2.1	19	90	9	62	38	0	0	61	0.96
61791415--61791465	19	2.5	20	81	9	59	43	1	0	54	1.11
61793491--61793524	17	2.0	17	94	0	59	44	50	0	5	1.26
61798121--61798154	17	2.0	17	94	0	59	44	50	0	5	1.26
61811678--61811718	21	2.0	21	90	0	64	19	29	21	29	1.98
61822045--61822089	18	2.5	18	100	0	90	44	4	26	24	1.72
61826319--61826420	4	25.5	4	100	0	204	50	24	0	25	1.50
61827801--61827936	51	2.7	50	77	8	123	38	20	5	35	1.75
61828026--61828103	36	2.2	36	100	0	156	32	7	19	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61828826--61828858	11	2.8	12	86	9	50	18	0	0	81	0.68
61835411--61835875	45	10.5	44	69	10	263	31	18	24	26	1.97
61835332--61835873	89	6.1	87	85	6	503	31	18	24	25	1.97
61835332--61835874	179	3.1	178	82	6	583	31	18	24	25	1.97
61836119--61836149	14	2.2	14	100	0	62	51	6	29	12	1.65
61837042--61837074	11	2.8	12	86	9	50	18	0	0	81	0.68
61843769--61843808	21	2.0	20	85	5	53	52	5	2	40	1.37
61843786--61843850	28	2.4	27	79	5	78	56	1	3	38	1.24
61861600--61861717	46	2.6	46	100	0	236	32	22	17	27	1.96
61861593--61862423	44	18.7	44	71	11	312	31	19	21	27	1.98
61861641--61861934	130	2.2	131	81	5	344	29	21	22	27	1.99
61861600--61862114	44	11.7	44	75	8	322	29	20	22	26	1.99
61861643--61862247	87	6.9	87	72	10	306	29	19	22	27	1.98
61861643--61862202	218	2.6	217	94	2	944	30	20	22	27	1.98
61862169--61862433	142	1.9	142	87	1	397	32	18	20	29	1.96
61885289--61885340	25	2.2	23	80	16	61	28	3	9	57	1.48
61887313--61887343	14	2.2	14	100	0	62	29	22	19	29	1.98
61897869--61897902	4	8.5	4	100	0	68	50	23	0	26	1.50
61899574--61899679	41	2.6	41	92	0	176	31	24	20	23	1.98
61900735--61900767	17	2.0	17	88	5	50	15	15	9	60	1.58
61904022--61904143	23	5.3	23	79	0	127	32	22	18	25	1.97
61904029--61904140	46	2.4	46	86	0	143	33	23	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61905785--61905921	51	2.7	51	76	8	127	37	19	5	37	1.74
61906491--61906552	32	1.9	32	83	6	81	43	11	8	37	1.70
61906624--61906667	20	2.3	18	84	7	52	27	0	6	65	1.17
61909295--61909345	24	2.1	24	88	0	75	50	11	1	35	1.50
61910570--61910636	34	1.9	35	84	3	91	44	13	8	32	1.75
61919899--61919946	16	2.8	17	71	9	53	37	12	2	47	1.53
61924541--61924576	4	9.0	4	100	0	72	50	25	0	25	1.50
61931849--61931888	14	2.7	15	84	7	55	45	2	0	52	1.14
61934263--61934406	72	2.0	72	100	0	288	25	20	19	34	1.96
61946255--61946440	73	2.5	73	96	0	345	40	23	6	29	1.79
61946441--61946475	3	11.7	3	100	0	70	68	0	0	31	0.90
61950694--61950833	73	1.9	73	100	0	280	40	25	5	27	1.78
61952908--61953110	46	4.3	48	88	7	265	35	14	21	28	1.92
61952842--61953110	98	2.7	98	93	0	457	34	14	22	28	1.93
61953074--61953219	37	4.0	37	93	1	242	36	16	21	24	1.94
61953923--61953948	3	8.7	3	100	0	52	69	0	0	30	0.89
61962449--61962567	51	2.3	51	80	8	143	36	17	5	41	1.72
61963269--61963312	19	2.5	17	82	17	54	22	0	2	75	0.92
61963403--61963448	22	2.2	20	88	7	65	56	0	0	43	0.99
61963413--61963444	14	2.3	14	94	0	55	53	0	0	46	1.00
61963403--61963453	20	2.4	22	87	6	70	54	0	1	43	1.11
61967148--61967205	30	2.0	29	83	10	73	51	10	5	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61967597--61967635	19	2.1	18	90	4	60	25	0	5	69	1.09
61968329--61968371	22	2.0	23	81	9	54	13	48	18	18	1.80
61973116--61973172	9	6.4	9	89	4	80	40	24	8	26	1.84
61973122--61973172	26	2.0	26	92	0	84	37	27	9	25	1.87
61973974--61974007	15	2.2	16	89	5	52	38	2	5	52	1.41
61975462--61975707	125	2.0	125	90	0	384	33	16	26	23	1.96
61979444--61979484	21	2.0	21	90	0	64	19	29	21	29	1.98
61982878--61982934	30	1.9	30	92	0	96	45	22	1	29	1.63
61983228--61983285	19	3.3	17	74	11	55	68	1	0	29	0.99
61983224--61983285	16	3.5	18	75	16	58	69	1	0	29	0.98
61983504--61983641	9	15.1	9	70	22	92	34	2	1	61	1.20
61983504--61983641	36	3.8	36	74	15	124	34	2	1	61	1.20
61983520--61983641	54	2.3	51	77	16	122	33	3	1	61	1.22
61985706--61985774	29	2.3	29	87	5	93	47	14	14	23	1.81
61990417--61990445	8	3.6	8	100	0	58	44	0	0	55	0.99
61990620--61990671	23	2.2	24	83	10	72	57	0	1	40	1.10
61991832--61991867	13	2.4	16	73	26	51	13	5	11	69	1.34
61991839--61991866	13	2.2	13	100	0	56	14	7	14	64	1.48
61997040--61997072	10	3.3	10	91	8	50	51	0	6	42	1.26
62002980--62003005	4	6.5	4	100	0	52	50	23	0	26	1.50
62004899--62005048	18	8.2	18	70	19	114	41	0	2	56	1.16
62004903--62004975	10	7.9	10	71	17	59	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62004901--62004978	26	2.9	27	79	11	88	43	0	0	56	0.99
62005207--62005300	44	2.1	44	86	4	125	34	29	5	30	1.80
62005282--62005334	16	3.3	16	97	0	97	20	33	5	39	1.76
62007739--62007773	17	2.0	18	88	5	54	28	0	0	71	0.86
62008893--62008945	24	2.2	24	89	0	79	49	9	3	37	1.53
62013186--62013370	101	1.8	102	89	3	293	24	17	27	30	1.97
62013186--62013370	51	3.7	50	81	6	196	24	17	27	30	1.97
62013292--62013372	26	3.2	26	65	28	73	22	14	29	33	1.94
62013392--62013578	42	4.7	41	71	20	137	22	18	26	33	1.97
62013394--62013542	76	2.0	76	90	1	237	20	19	26	32	1.97
62013469--62013622	44	3.6	42	82	7	168	20	18	27	33	1.96
62050849--62050886	19	2.1	18	90	9	60	15	15	42	26	1.87
62051406--62051440	3	11.7	3	100	0	70	34	0	0	65	0.93
62051875--62051928	22	2.4	23	75	3	56	31	9	7	51	1.61
62064259--62064894	99	6.4	99	92	0	1060	33	24	19	22	1.97
62064259--62064894	197	3.2	197	95	0	1128	33	24	19	22	1.97
62064259--62064894	296	2.1	296	92	0	1058	33	24	19	22	1.97
62066219--62066262	3	14.7	3	95	0	61	34	6	0	59	1.24
62066698--62066751	22	2.4	23	75	3	56	31	9	7	51	1.61
62068146--62068175	13	2.3	13	94	0	51	33	3	13	50	1.58
62068270--62068367	50	2.0	50	91	0	160	27	19	30	22	1.98
62068334--62068398	31	2.1	31	94	0	112	27	21	29	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62068284--62068448	81	2.0	81	91	2	269	26	20	30	22	1.98
62068365--62068544	50	3.6	50	84	3	227	25	22	29	22	1.99
62074137--62074319	82	2.2	82	81	2	217	34	22	14	28	1.93
62076216--62076280	32	2.1	32	85	5	89	52	3	21	23	1.61
62076242--62076373	63	2.1	63	88	2	194	49	6	16	28	1.69
62077993--62078069	38	2.0	38	97	0	145	51	6	12	28	1.65
62087264--62087326	19	3.3	19	73	8	65	30	22	23	23	1.99
62088064--62088169	53	2.0	53	100	0	212	37	13	5	43	1.67
62090677--62090902	62	3.7	59	81	5	227	18	27	27	26	1.98
62090677--62090902	124	1.8	124	85	3	321	18	27	27	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218