genome.fa.s23.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  104  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30159517--30159730	47	4.5	47	91	2	329	28	29	8	32	1.87
30159517--30159730	96	2.3	94	90	1	329	28	29	8	32	1.87
30163014--30163058	23	1.9	24	86	4	65	26	51	2	20	1.59
30169918--30169973	26	2.2	26	90	0	85	41	12	12	33	1.81
30176084--30176302	41	5.3	41	83	0	213	21	20	24	32	1.97
30176084--30176316	82	2.8	82	83	1	297	23	20	24	31	1.98
30181444--30181733	129	2.3	127	84	1	391	20	17	31	30	1.96
30181444--30181712	43	6.3	43	85	1	337	18	17	32	30	1.95
30182406--30182445	14	2.7	15	88	3	55	30	0	10	60	1.30
30182406--30182451	15	3.1	15	87	3	58	28	0	10	60	1.30
30184001--30184138	62	2.2	62	85	5	190	32	27	20	19	1.97
30185899--30186144	119	2.1	119	96	0	456	52	9	8	29	1.64
30187780--30187955	95	1.9	95	90	2	282	35	16	14	32	1.89
30191869--30191903	15	2.3	15	100	0	70	45	5	5	42	1.51
30193856--30193909	25	2.2	25	93	0	90	20	16	31	31	1.95
30194186--30194235	23	2.3	22	80	10	57	18	16	20	46	1.85
30199194--30199655	79	5.7	79	72	14	248	44	9	13	33	1.75
30199194--30199504	85	3.7	84	77	9	303	41	10	14	32	1.80
30200313--30200363	25	2.0	25	92	0	84	50	7	15	25	1.71
30200338--30200398	30	2.0	31	90	3	97	42	6	24	26	1.79
30204969--30205019	25	2.0	25	96	0	93	50	7	17	23	1.72
30204966--30205054	30	3.1	30	84	12	116	42	6	24	25	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30210121--30210156	18	1.9	18	88	5	54	58	2	0	38	1.13
30210131--30210196	30	2.2	29	82	15	80	56	0	0	43	0.99
30210262--30210287	9	2.9	9	100	0	52	42	0	0	57	0.98
30210747--30211576	416	2.0	416	98	0	1606	33	12	21	33	1.90
30221411--30221461	21	2.4	22	80	6	59	27	19	35	17	1.94
30222225--30222254	15	2.1	15	93	6	53	0	13	0	86	0.57
30222342--30222384	17	2.5	17	100	0	86	4	11	6	76	1.13
30222349--30222413	15	4.3	15	80	7	69	6	12	3	78	1.05
30222344--30222396	17	3.3	16	84	12	56	3	13	3	79	1.01
30223119--30223203	25	3.3	26	84	12	90	25	2	2	69	1.12
30223131--30223211	25	3.3	24	86	8	110	27	1	2	69	1.09
30223143--30223221	25	3.2	23	82	10	77	27	3	2	65	1.22
30223357--30223429	28	2.8	25	78	13	83	30	8	2	58	1.41
30226961--30226994	10	3.4	10	91	0	50	64	11	0	23	1.26
30235960--30236003	23	1.9	22	82	17	54	38	22	0	38	1.55
30236102--30236222	46	2.6	46	96	0	224	34	25	19	20	1.96
30236102--30236223	23	5.3	23	88	0	190	34	25	18	21	1.96
30237956--30238075	56	2.1	56	98	0	231	45	9	23	22	1.81
30239203--30239427	40	5.7	40	86	5	296	24	22	28	25	2.00
30239203--30239460	119	2.2	119	81	6	292	25	21	27	25	1.99
30247038--30247262	40	5.7	40	86	5	296	24	22	28	25	2.00
30247038--30247295	119	2.2	119	81	6	292	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30257651--30257882	115	2.0	117	84	3	308	27	14	22	36	1.93
30261092--30261506	47	8.7	47	93	2	688	32	8	29	29	1.87
30261092--30261506	96	4.4	95	95	1	692	32	8	29	29	1.87
30261624--30261701	36	2.1	37	88	2	113	24	19	30	25	1.98
30264393--30264423	16	1.9	16	93	0	53	45	12	12	29	1.80
30272631--30272746	27	4.3	27	78	6	110	22	22	13	41	1.89
30272631--30272745	53	2.2	53	87	1	158	22	22	13	40	1.89
30272660--30272746	27	3.3	27	82	9	115	21	21	13	42	1.88
30277719--30277799	42	1.9	43	89	2	128	25	22	35	16	1.94
30287102--30287126	13	1.9	13	100	0	50	8	0	24	68	1.16
30288101--30288309	114	1.8	113	88	2	292	42	4	13	39	1.66
30288647--30288796	41	3.7	41	89	1	212	28	17	28	26	1.97
30294473--30294497	13	1.9	13	100	0	50	8	0	24	68	1.16
30295578--30295610	12	2.8	12	90	4	50	36	3	9	51	1.49
30295472--30295675	112	1.8	112	94	0	363	41	4	14	39	1.66
30296016--30296165	41	3.7	41	89	0	228	29	18	28	24	1.98
30301383--30301465	28	3.0	28	68	7	69	39	18	16	25	1.91
30309644--30309772	43	3.0	41	79	10	134	24	17	27	31	1.97
30313046--30313100	25	2.3	23	78	6	56	29	18	30	21	1.97
30316956--30317145	40	4.8	39	81	3	182	36	14	30	18	1.91
30317952--30317976	9	2.8	9	100	0	50	24	8	0	68	1.16
30327413--30327477	23	2.8	23	73	0	67	23	26	16	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30328077--30328146	9	7.8	9	91	0	95	38	27	11	22	1.89
30328082--30328146	18	3.6	18	95	0	121	38	27	12	21	1.89
30328082--30328146	27	2.4	27	92	0	112	38	27	12	21	1.89
30328225--30328268	18	2.4	18	84	0	61	11	2	43	43	1.53
30329301--30329328	11	2.5	11	100	0	56	35	0	0	64	0.94
30333069--30333101	17	1.9	17	100	0	66	36	3	6	54	1.41
30335930--30336615	342	2.0	342	90	1	1070	39	16	21	23	1.92
30337827--30338070	122	2.0	122	100	0	488	35	10	13	40	1.80
30341402--30341629	113	2.0	113	99	0	447	34	13	7	44	1.71
30342997--30343030	17	2.1	17	88	5	52	35	20	0	44	1.52
30346026--30346201	69	2.6	69	83	3	212	26	22	15	35	1.94
30354851--30354926	27	2.8	27	95	0	134	19	25	32	22	1.97
30355847--30355878	15	2.1	15	100	0	64	28	6	12	53	1.62
30362412--30362443	6	5.2	6	96	3	55	65	0	18	15	1.27
30362603--30362661	25	2.4	25	97	0	109	37	8	16	37	1.80
30363552--30363597	24	1.9	24	95	0	83	23	26	10	39	1.88
30364825--30364870	10	4.5	10	86	2	65	28	2	21	47	1.62
30371937--30371989	18	2.9	18	77	8	54	60	1	1	35	1.19
30372201--30372239	22	1.9	20	85	15	53	51	12	0	35	1.40
30372370--30372408	5	7.6	5	82	5	51	41	17	0	41	1.50
30382855--30382913	26	2.3	26	87	0	82	42	15	11	30	1.83
30389300--30389368	26	2.7	26	90	0	111	23	21	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30397517--30397557	20	2.2	18	86	8	55	48	0	2	48	1.14
30402171--30402225	22	2.4	23	90	6	85	58	3	0	38	1.16
30402242--30402279	17	2.2	17	95	0	67	71	0	0	28	0.87
30402232--30402262	10	3.0	10	95	4	53	77	0	0	22	0.77
30402219--30402303	27	3.0	28	84	5	118	65	0	1	32	1.00
30402221--30402309	28	3.2	27	83	12	117	69	0	1	29	0.95
30405269--30405316	15	3.1	15	77	19	53	33	6	0	60	1.22
30407174--30407204	12	2.6	12	89	0	53	25	0	0	74	0.82
30411157--30411222	25	2.6	25	85	0	87	24	33	31	10	1.89
30428835--30429731	453	2.0	453	93	0	1555	27	17	15	38	1.91
30432228--30432262	11	3.2	11	95	0	61	62	0	8	28	1.24
30433761--30433812	27	1.9	27	92	0	86	19	32	28	19	1.96
30433853--30433907	23	2.2	26	84	15	73	60	5	27	7	1.46
30433905--30433971	23	2.6	25	79	13	66	73	0	26	0	0.84
30433918--30433975	12	4.8	12	76	19	59	74	0	25	0	0.82
30433921--30433975	17	3.1	18	85	10	78	74	0	25	0	0.82
30440371--30440574	107	1.8	111	84	7	281	61	13	1	23	1.41
30440646--30440672	6	4.5	6	100	0	54	85	14	0	0	0.61
30441073--30441113	22	1.9	21	90	5	64	48	0	4	46	1.23
30441186--30441219	13	2.5	14	85	9	52	26	0	0	73	0.83
30442877--30442986	10	10.8	10	72	21	61	57	2	0	39	1.19
30442861--30442946	20	4.4	19	77	11	84	59	1	1	38	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30442861--30442946	31	2.9	30	83	13	106	59	1	1	38	1.13
30443932--30443976	19	2.4	19	88	3	65	33	2	4	60	1.29
30443866--30444130	9	28.0	9	71	19	132	35	1	2	60	1.20
30444001--30444080	30	2.7	30	88	9	112	28	1	2	67	1.11
30444357--30444404	5	9.6	5	86	0	60	45	2	12	39	1.54
30444673--30444708	6	6.0	6	100	0	72	16	0	33	50	1.46
30446790--30446844	18	2.8	19	71	17	51	23	5	20	50	1.68
30453273--30453502	96	2.4	96	86	2	311	38	3	18	39	1.68
30453535--30454077	126	4.3	126	88	0	775	32	18	22	27	1.97
30459503--30459531	11	2.6	11	100	0	58	37	0	31	31	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218