genome.fa.s23.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  50  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15263196--15264153	321	3.0	319	85	4	1272	31	20	24	23	1.98
15263392--15264089	139	5.1	139	80	6	670	31	20	25	23	1.98
15263227--15264461	44	27.3	44	70	7	638	31	19	24	24	1.98
15269128--15269153	13	2.0	13	100	0	52	30	7	15	46	1.74
15271088--15271128	20	2.0	20	90	9	66	14	14	4	65	1.42
15272079--15272113	7	5.0	7	86	13	54	68	0	17	14	1.21
15272079--15272129	21	2.4	21	84	12	61	66	0	17	15	1.25
15273486--15273828	44	7.8	44	66	10	180	30	18	23	27	1.98
15273430--15273884	132	3.4	132	90	0	721	29	18	24	28	1.98
15273776--15273991	107	2.0	107	92	1	362	30	18	24	27	1.98
15275822--15275882	18	3.3	18	77	8	68	37	9	1	50	1.45
15275826--15275887	20	3.2	20	81	6	74	38	9	1	50	1.45
15275956--15275989	16	2.1	16	88	0	50	38	2	14	44	1.61
15283013--15283037	9	2.8	9	100	0	50	40	12	12	36	1.79
15288422--15288477	27	2.1	27	96	0	103	30	3	1	64	1.21
15288431--15288488	27	2.1	27	81	6	64	31	8	1	58	1.38
15290057--15290120	27	2.4	27	82	7	69	62	1	6	29	1.29
15290198--15290271	16	4.7	16	81	3	87	54	1	10	33	1.44
15290197--15290259	31	2.0	31	87	0	90	57	1	11	30	1.43
15292089--15292404	158	2.0	156	93	2	481	32	9	15	41	1.80
15301526--15301764	125	1.9	123	88	3	354	28	15	23	33	1.95
15302958--15302997	20	2.0	20	85	9	55	50	10	5	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15303745--15303778	15	2.3	15	90	5	52	67	5	0	26	1.13
15303965--15304006	22	1.9	22	90	0	66	33	0	33	33	1.58
15303978--15304036	30	2.0	30	93	0	100	33	0	35	30	1.58
15304008--15304084	22	3.5	22	89	1	120	38	0	27	33	1.57
15307352--15307405	22	2.5	22	72	6	56	42	20	0	37	1.52
15313231--15313466	50	4.7	50	81	6	230	24	27	21	26	1.99
15315304--15315355	23	2.2	24	86	6	72	57	17	0	25	1.40
15319240--15319273	16	2.1	16	88	0	50	50	14	17	17	1.79
15321676--15321723	17	3.0	17	77	19	50	18	0	6	75	1.01
15321686--15321728	17	2.4	19	84	7	63	18	0	6	74	1.04
15321758--15321958	99	2.0	100	90	2	316	46	3	2	47	1.33
15322877--15322926	26	2.0	24	84	7	64	40	4	6	50	1.46
15323341--15323392	10	5.4	10	76	17	56	67	1	3	26	1.18
15325615--15325701	31	3.0	31	65	23	80	54	2	16	27	1.54
15327030--15327088	26	2.2	28	76	17	70	47	30	0	22	1.51
15328049--15328092	14	3.2	14	81	15	56	2	11	6	79	1.01
15328253--15328300	24	2.1	21	88	11	69	43	2	0	54	1.12
15328253--15328291	12	3.4	11	80	13	51	46	2	0	51	1.14
15337096--15337170	31	2.4	31	90	0	123	52	12	18	17	1.75
15339728--15339767	21	1.9	21	89	0	62	50	7	10	32	1.64
15340310--15340355	24	1.9	24	81	0	56	45	2	2	50	1.26
15343520--15343564	22	2.0	22	91	0	72	26	0	6	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15352381--15352416	17	2.1	17	100	0	72	36	0	36	27	1.57
15355243--15355298	23	2.5	22	82	2	67	51	1	10	35	1.47
15356553--15356626	31	2.3	32	84	6	89	51	1	14	32	1.51
15356910--15356977	9	7.3	9	70	6	55	25	4	2	67	1.23
15358068--15358106	7	5.9	7	88	5	55	0	25	0	74	0.82
15358163--15358212	12	4.5	11	79	18	50	64	6	2	28	1.28
15358163--15358218	22	2.6	22	83	8	71	62	5	1	30	1.28
15362939--15363033	25	3.9	25	68	10	79	20	26	21	32	1.97
15371581--15371744	63	2.6	63	80	1	168	29	25	19	26	1.99
15373612--15373659	15	3.1	15	77	14	53	41	0	2	56	1.11
15373612--15373673	30	2.0	31	81	9	74	46	0	1	51	1.10
15373686--15373825	67	2.1	69	93	2	239	60	4	3	32	1.33
15375257--15375293	14	2.9	14	84	15	53	40	0	0	59	0.97
15375257--15375306	12	4.1	13	85	15	63	42	0	0	58	0.98
15375262--15375308	22	2.0	22	92	8	76	42	0	0	57	0.98
15375269--15375323	23	2.4	22	84	6	65	43	3	1	50	1.30
15375356--15375424	15	4.3	15	71	22	52	49	4	1	44	1.31
15375939--15375980	17	2.3	19	80	16	61	11	30	0	57	1.35
15375944--15375984	17	2.4	17	95	0	73	9	34	0	56	1.32
15388721--15388763	22	2.0	22	100	0	86	37	4	11	46	1.61
15392594--15392683	44	2.0	44	89	0	135	20	25	20	34	1.96
15396868--15396918	18	2.8	17	76	21	57	56	0	5	37	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15396868--15396927	19	3.2	19	81	9	79	58	0	5	36	1.20
15396876--15397047	21	8.4	20	70	16	86	56	1	3	38	1.27
15396971--15397049	21	3.7	21	83	6	88	53	2	3	40	1.33
15396866--15397036	10	16.9	10	66	14	66	56	1	4	37	1.29
15398039--15398077	19	2.0	19	85	5	51	64	5	0	30	1.15
15399301--15399347	12	3.8	12	81	13	51	76	17	0	6	0.98
15400600--15400643	19	2.4	17	85	14	61	29	2	0	68	1.02
15400831--15400875	3	14.3	3	90	9	72	31	0	2	66	1.04
15406458--15406507	25	2.0	25	100	0	100	32	16	16	36	1.90
15411198--15411225	7	4.0	7	100	0	56	14	14	14	57	1.66
15419976--15420073	34	2.9	34	81	3	99	40	17	13	28	1.87
15420364--15420494	28	4.7	27	80	8	86	54	3	17	24	1.57
15420364--15420413	26	1.9	26	92	8	84	56	0	22	22	1.43
15420397--15420490	29	3.2	28	81	8	107	57	4	12	25	1.54
15421805--15421849	23	2.0	23	82	8	56	35	4	0	60	1.17
15424323--15424437	59	1.9	59	87	0	167	36	19	14	29	1.91
15426002--15426433	67	6.5	66	79	6	356	23	23	15	36	1.94
15431572--15431868	50	5.8	50	81	3	256	27	19	28	24	1.99
15439127--15439213	24	3.7	24	85	1	122	44	4	29	20	1.71
15442363--15442415	24	2.2	24	93	0	88	18	26	18	35	1.95
15442371--15442442	24	3.0	23	82	12	74	18	26	20	34	1.95
15450692--15450768	33	2.3	34	86	8	113	45	5	23	25	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15451934--15452000	26	2.6	25	86	6	82	25	19	23	31	1.98
15453497--15453555	25	2.3	26	77	8	68	57	3	3	35	1.32
15457414--15457465	21	2.5	21	87	0	77	32	30	5	30	1.81
15461481--15461536	15	3.7	15	81	13	62	10	10	1	76	1.09
15461489--15461531	19	2.2	20	87	8	61	11	6	2	79	1.02
15462785--15462862	42	2.0	42	82	10	101	29	5	12	52	1.61
15465640--15465665	6	4.3	6	100	0	52	34	0	15	50	1.45
15466286--15466394	41	2.6	41	92	1	173	24	22	28	23	2.00
15469292--15469375	41	2.0	41	97	0	159	45	0	7	47	1.30
15470814--15470868	24	2.4	22	80	14	74	41	9	5	43	1.59
15470816--15470867	25	2.1	24	89	3	77	38	9	5	46	1.61
15471687--15471716	7	4.4	7	95	4	53	60	0	0	40	0.97
15479912--15480016	37	2.8	38	74	20	105	41	2	2	52	1.31
15479913--15479987	11	6.7	11	70	22	50	40	2	2	54	1.28
15479998--15480114	62	1.9	59	86	5	162	43	1	4	50	1.31
15487450--15487495	21	2.2	21	100	0	92	47	4	0	47	1.21
15488455--15488498	14	2.9	16	83	13	65	15	0	9	75	1.05
15488455--15488498	15	2.9	15	86	10	63	15	0	9	75	1.05
15489232--15489259	9	3.1	9	100	0	56	35	32	0	32	1.58
15494454--15494513	29	2.1	29	87	6	86	30	10	16	43	1.81
15496402--15496449	20	2.4	20	92	0	78	43	29	6	20	1.76
15496390--15496438	9	5.3	9	83	11	55	36	32	10	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15496411--15496454	11	4.2	11	82	11	56	50	27	4	18	1.66
15510229--15510290	22	2.7	22	80	5	70	50	3	1	45	1.27
15510269--15510312	20	2.4	17	80	20	61	50	4	2	43	1.35
15510273--15510311	20	2.0	20	100	0	78	51	5	2	41	1.38
15510303--15510422	59	2.1	59	90	1	197	41	5	9	44	1.58
15510488--15510531	22	1.9	24	86	9	65	59	2	2	36	1.23
15512605--15512647	18	2.4	18	88	0	59	20	25	9	44	1.81
15513021--15513141	59	2.1	59	87	3	172	31	3	9	56	1.47
15514275--15514335	30	2.0	30	87	0	86	19	32	32	14	1.92
15520650--15520674	9	2.8	9	100	0	50	84	8	0	8	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218