genome.fa.s23.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  120  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35903040--35903126	45	1.9	45	92	0	147	34	22	16	26	1.95
35903137--35903323	51	3.7	50	75	8	182	31	27	16	24	1.96
35903134--35903319	101	1.8	101	84	3	230	32	26	16	24	1.96
35903550--35903606	30	1.9	30	85	0	78	36	24	7	31	1.82
35909108--35909152	23	2.0	23	82	8	56	48	15	0	35	1.45
35910493--35910654	87	1.9	87	88	2	245	27	27	14	30	1.95
35911346--35911374	15	1.9	15	100	0	58	20	0	3	75	0.94
35912675--35912714	20	2.0	20	90	0	62	27	10	12	50	1.72
35912660--35912726	34	1.9	35	87	3	100	32	8	11	46	1.72
35918307--35918385	37	2.1	37	88	4	115	25	30	18	25	1.98
35918504--35919042	47	11.4	47	94	0	916	29	29	8	32	1.87
35926896--35926951	20	2.7	20	88	8	67	26	28	10	33	1.90
35926910--35926951	20	2.1	20	100	0	84	28	28	9	33	1.88
35934202--35934234	16	2.1	16	100	0	66	30	33	0	36	1.58
35935518--35935613	27	3.6	27	76	0	102	32	20	29	17	1.96
35935499--35935636	54	2.6	54	77	4	152	33	18	28	20	1.96
35938626--35938657	8	4.0	8	100	0	64	25	0	0	75	0.81
35941606--35941641	18	1.9	19	88	5	56	22	5	13	58	1.56
35945693--35945732	19	2.0	20	85	4	55	35	0	2	62	1.09
35947974--35948000	8	3.4	8	100	0	54	22	11	14	51	1.73
35965124--35965148	12	2.1	12	100	0	50	28	16	16	40	1.89
35973219--35973271	25	2.1	25	89	0	79	32	24	24	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35986529--35986598	37	1.9	37	82	8	90	54	24	10	11	1.66
35995541--35995966	47	9.1	47	95	0	683	28	30	9	31	1.88
35999376--35999556	40	4.6	40	78	4	172	24	26	22	26	2.00
35999364--35999556	80	2.4	80	80	7	198	24	26	22	25	2.00
35999862--35999939	29	2.7	29	84	7	97	28	33	14	24	1.94
35999922--36000022	43	2.4	42	96	3	186	26	35	14	22	1.93
36002009--36002437	47	9.1	47	85	7	539	28	30	9	31	1.88
36005778--36006039	40	6.6	40	87	3	307	26	28	20	24	1.99
36005778--36006039	119	2.2	119	82	4	314	26	28	20	24	1.99
36005778--36006039	79	3.3	79	84	4	307	26	28	20	24	1.99
36013728--36013990	40	6.6	40	87	3	316	26	28	20	24	1.99
36025570--36025661	44	2.1	44	97	0	175	50	4	15	30	1.63
36038718--36038770	25	2.1	26	83	16	67	41	0	35	22	1.54
36038793--36038817	7	3.6	7	100	0	50	32	0	52	16	1.44
36044980--36045022	21	2.0	22	86	4	61	53	0	0	46	1.00
36044989--36045030	21	2.0	21	85	0	57	54	0	0	45	0.99
36044982--36045052	25	2.7	26	74	22	67	46	0	0	53	1.00
36052419--36052456	17	2.3	17	90	4	60	57	13	0	28	1.36
36060355--36060384	9	3.3	9	95	0	51	33	16	33	16	1.92
36071291--36071330	18	2.2	19	86	4	55	7	20	5	67	1.34
36073393--36073474	25	3.3	24	80	11	78	31	21	23	23	1.98
36075874--36075920	18	2.6	19	73	10	53	8	14	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36076516--36076549	3	11.0	3	87	6	50	35	2	0	61	1.11
36083440--36083559	55	2.3	51	84	7	152	21	38	18	21	1.94
36093702--36093799	27	3.5	28	90	2	135	26	13	28	31	1.94
36093730--36093812	27	3.0	27	87	5	96	30	12	25	32	1.92
36093702--36093813	28	4.0	27	83	6	98	28	12	25	33	1.92
36101699--36101796	27	3.5	28	90	2	135	26	13	28	31	1.94
36101727--36101809	27	3.0	27	87	5	96	30	12	25	32	1.92
36101699--36101810	28	4.0	27	83	6	98	28	12	25	33	1.92
36106264--36106309	21	2.2	21	92	0	74	30	13	19	36	1.90
36107931--36108037	50	2.1	50	84	0	142	27	19	31	21	1.97
36108329--36108367	20	2.0	20	90	10	62	56	5	23	15	1.59
36120459--36120494	7	5.3	7	96	3	65	27	27	0	44	1.55
36122138--36122172	7	5.0	7	100	0	70	14	57	0	28	1.38
36128099--36128192	46	2.0	46	93	4	163	24	18	22	35	1.96
36128510--36128553	12	3.8	12	87	3	54	72	11	2	13	1.21
36128520--36128551	12	2.5	13	95	5	57	78	6	3	12	1.06
36128593--36128627	14	2.4	14	90	4	52	65	5	8	20	1.40
36131805--36131860	28	2.0	28	96	0	103	19	14	41	25	1.89
36145086--36145139	25	2.1	26	86	10	76	31	3	1	62	1.23
36148101--36148146	24	1.9	24	81	0	56	43	8	4	43	1.55
36150064--36150122	19	3.2	19	70	18	61	30	10	11	47	1.73
36163567--36163673	50	2.1	50	86	3	153	18	32	22	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36163583--36163715	50	2.5	50	79	10	142	24	30	19	25	1.98
36168433--36168624	32	5.9	32	80	8	163	41	13	10	34	1.79
36168462--36168598	67	2.0	68	88	1	204	42	10	11	35	1.75
36175905--36176107	32	6.8	30	71	16	134	41	14	10	33	1.80
36175997--36176107	54	2.1	54	87	0	159	41	13	9	35	1.78
36176032--36176077	22	2.1	22	87	0	65	43	13	6	36	1.69
36175938--36176140	32	6.8	32	70	17	105	43	13	9	33	1.76
36183419--36184275	436	2.0	436	87	2	1229	35	22	13	28	1.92
36194738--36194780	20	2.2	20	86	0	59	23	23	18	34	1.96
36197942--36197989	25	2.0	24	83	4	60	18	25	18	37	1.94
36199606--36199695	25	3.6	25	77	3	92	30	21	22	26	1.99
36204498--36204617	60	2.0	60	90	3	188	31	25	19	24	1.98
36209456--36209750	50	5.8	50	81	4	308	22	26	23	27	1.99
36209508--36209750	98	2.4	102	82	8	280	21	27	23	27	1.99
36210919--36213203	723	3.2	702	88	4	3171	25	20	17	36	1.94
36218319--36219026	140	5.1	140	95	0	1240	45	5	8	40	1.58
36219002--36219148	75	2.0	75	86	4	208	29	15	9	44	1.78
36219946--36220179	43	5.4	44	74	8	119	44	20	14	20	1.87
36220025--36220222	43	4.6	43	74	3	148	40	22	15	21	1.90
36222922--36223054	50	2.7	50	80	0	167	21	26	22	30	1.99
36225931--36225962	12	2.7	12	100	0	64	43	6	0	50	1.27
36231243--36231512	134	2.0	135	99	0	533	32	22	14	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36231895--36232141	50	4.8	50	77	3	145	22	27	21	28	1.99
36233964--36234014	16	3.2	15	81	10	57	43	3	25	27	1.72
36248202--36248233	17	1.9	17	93	6	57	25	15	18	40	1.90
36250771--36250813	13	3.1	14	84	12	54	60	0	0	39	0.97
36254393--36254427	16	2.2	16	100	0	70	31	17	5	45	1.71
36259519--36259754	30	7.8	31	68	12	102	36	13	26	24	1.92
36259520--36259785	89	3.0	90	85	4	342	36	13	27	22	1.92
36259643--36259770	30	4.3	30	76	9	136	36	14	26	21	1.93
36264008--36264061	25	2.2	24	83	12	65	50	16	3	29	1.63
36265249--36265291	23	1.9	22	85	4	59	44	2	0	53	1.13
36275081--36275178	20	4.9	20	66	5	63	13	26	20	39	1.89
36287914--36287969	28	2.0	28	100	0	112	17	17	28	35	1.93
36294335--36294424	33	2.7	33	85	0	126	21	14	12	52	1.74
36294624--36294800	51	3.3	51	71	13	158	24	27	10	36	1.89
36294564--36294800	109	2.2	109	86	1	332	24	26	10	37	1.89
36296119--36296148	7	4.3	7	91	0	51	30	0	50	20	1.49
36299431--36299480	25	2.0	25	92	0	82	42	18	8	32	1.79
36301191--36301277	6	14.7	6	78	7	79	74	3	3	18	1.10
36313285--36313320	18	1.9	19	88	5	56	55	0	11	33	1.35
36317203--36317409	27	7.7	27	79	2	200	40	21	16	21	1.91
36317203--36317409	81	2.6	81	82	3	238	40	21	16	21	1.91
36318169--36318198	13	2.4	13	94	5	53	36	0	16	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36324245--36324436	50	3.8	50	83	2	233	20	29	22	27	1.99
36324248--36324435	100	1.9	100	85	0	259	19	29	22	27	1.98
36330068--36330263	50	3.9	50	85	0	248	22	29	22	26	1.99
36336818--36337009	50	3.8	50	86	0	258	20	30	22	26	1.98
36338759--36338926	27	6.2	26	86	4	183	44	20	15	20	1.87
36338759--36338927	81	2.1	81	82	6	209	43	20	15	20	1.87
36339095--36339171	26	3.0	26	88	0	118	15	19	28	36	1.92
36342453--36342743	50	5.8	49	81	4	307	20	28	23	27	1.99
36346183--36346215	16	2.0	17	94	5	59	30	33	0	36	1.58
36351101--36351199	25	4.0	25	77	7	103	32	20	23	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218