genome.fa.s23.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  37  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11635427--11635497	35	2.0	35	100	0	142	28	15	22	33	1.95
11636899--11636947	21	2.3	21	85	0	80	20	26	34	18	1.95
11655221--11655306	43	2.0	43	93	0	145	38	4	12	44	1.64
11682496--11682679	91	2.0	91	100	0	368	47	23	8	20	1.78
11682901--11682948	5	9.6	5	100	0	96	39	18	0	41	1.51
11684791--11684823	17	1.9	18	88	11	52	48	0	9	42	1.35
11690079--11690111	12	2.8	12	100	0	66	18	24	0	57	1.40
11691024--11691130	47	2.3	47	88	1	162	30	14	22	31	1.94
11699021--11699055	18	2.0	17	88	5	52	34	0	5	60	1.21
11700074--11700138	3	21.3	3	76	14	62	61	4	1	32	1.26
11700074--11700137	11	5.9	10	76	20	58	62	4	1	31	1.25
11701754--11702646	132	6.8	132	86	3	1188	28	24	18	29	1.98
11701779--11702646	265	3.3	263	85	3	1160	28	23	18	29	1.98
11702278--11702470	44	4.4	44	69	10	126	26	24	18	30	1.98
11701779--11702646	397	2.2	397	87	2	1280	28	23	18	29	1.98
11707299--11707334	17	2.1	17	89	0	54	44	22	16	16	1.86
11708853--11708909	3	18.3	3	79	13	62	61	3	1	33	1.23
11708854--11708909	14	3.9	14	86	11	62	62	3	1	32	1.23
11726203--11726289	42	2.0	44	93	6	151	24	2	13	59	1.46
11728138--11728361	114	2.0	114	100	0	448	28	21	16	33	1.95
11730366--11730404	13	2.9	14	88	7	62	66	0	0	33	0.92
11730542--11730580	17	2.3	16	86	8	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11732677--11732728	26	2.0	26	100	0	104	34	15	34	15	1.89
11738659--11738746	43	2.0	43	100	0	176	21	21	15	40	1.90
11739407--11739652	50	4.8	50	85	3	294	23	29	20	26	1.99
11746321--11746361	12	3.2	12	80	12	55	48	0	7	43	1.30
11750593--11750690	43	2.3	43	94	0	169	26	28	16	28	1.97
11751063--11751130	21	3.2	21	89	0	100	7	47	13	32	1.70
11752962--11753180	25	8.4	25	71	21	112	35	0	15	47	1.53
11753015--11753195	16	11.1	16	78	12	181	34	0	15	49	1.49
11753030--11753194	49	3.4	51	79	12	173	34	0	15	49	1.49
11752962--11753189	9	26.2	9	73	15	169	35	0	15	47	1.52
11753343--11753423	12	7.2	12	68	20	50	40	0	13	45	1.44
11753466--11753526	25	2.4	25	86	5	79	34	1	18	45	1.59
11753465--11753534	9	8.2	9	72	15	51	34	1	17	47	1.56
11753606--11753640	17	2.1	16	94	5	61	40	17	8	34	1.80
11753701--11753742	22	1.9	22	95	0	75	45	2	4	47	1.36
11753697--11753915	83	2.5	89	84	13	319	47	6	5	40	1.53
11755395--11755557	83	1.9	86	82	8	210	34	19	15	30	1.93
11756426--11756459	15	2.5	13	86	13	50	44	35	0	20	1.52
11756656--11756750	49	1.9	49	81	8	113	51	22	3	23	1.62
11756780--11757049	115	2.4	111	87	4	380	25	22	20	31	1.98
11756963--11757233	93	2.9	92	90	3	420	23	22	20	33	1.97
11757142--11757569	114	3.8	114	84	1	552	26	22	17	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11757142--11757559	228	1.8	228	87	2	624	27	23	17	32	1.97
11763666--11763697	13	2.5	13	94	0	55	56	0	3	40	1.15
11770746--11770772	7	3.9	7	100	0	54	0	14	11	74	1.08
11773240--11773283	21	2.1	21	95	0	79	43	22	4	29	1.73
11777158--11777234	14	5.0	15	71	20	52	42	14	9	33	1.77
11777174--11777213	20	2.0	20	90	0	62	50	12	10	27	1.72
11777162--11777228	34	1.9	35	90	3	109	46	13	8	31	1.74
11781136--11781451	106	3.0	105	83	2	407	29	18	19	32	1.95
11782823--11782945	59	2.0	61	90	3	196	26	24	6	43	1.78
11782823--11782945	30	4.1	30	91	3	194	26	24	6	43	1.78
11787514--11787637	30	4.1	30	93	1	203	25	24	6	43	1.78
11787524--11787631	15	7.2	15	67	12	78	25	22	7	44	1.79
11788327--11788646	106	3.0	105	85	2	433	32	19	17	30	1.95
11793944--11793968	4	6.2	4	100	0	50	48	24	0	28	1.52
11794318--11794633	106	3.0	105	84	2	416	30	18	19	32	1.95
11796212--11796531	106	3.0	105	84	2	424	33	19	17	30	1.95
11799183--11799227	21	2.1	21	87	0	63	15	15	24	44	1.85
11799290--11799557	43	6.3	43	84	0	322	29	27	18	24	1.98
11799293--11799527	128	1.8	129	86	4	341	28	27	18	25	1.98
11803034--11803101	8	8.8	8	75	12	61	80	13	4	1	0.92
11803035--11803102	15	4.5	14	79	15	73	79	14	4	1	0.96
11803538--11803571	18	1.9	17	88	5	50	76	2	17	2	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11803537--11803589	24	2.3	23	86	3	70	77	3	16	1	1.01
11804487--11804546	24	2.5	24	80	0	75	38	10	21	30	1.86
11804835--11805503	100	6.7	100	85	3	852	31	21	21	24	1.98
11804836--11805468	50	12.7	50	67	6	311	31	21	21	24	1.98
11804835--11805503	199	3.4	198	84	3	873	31	21	21	24	1.98
11804835--11805503	299	2.2	296	87	3	939	31	21	21	24	1.98
11805509--11806132	40	14.9	43	78	11	570	32	23	20	23	1.98
11805509--11806008	82	6.0	82	84	8	670	32	23	21	23	1.98
11805557--11806182	129	4.9	129	85	5	698	33	22	20	23	1.98
11806429--11806462	17	1.9	18	88	5	52	47	11	29	11	1.76
11807965--11808008	21	2.2	21	88	11	67	43	18	0	38	1.50
11808546--11808854	106	2.9	108	82	1	381	29	18	19	32	1.95
11823194--11823337	21	6.9	21	70	3	65	42	17	22	17	1.89
11823189--11823337	42	3.5	42	83	3	165	42	17	22	16	1.88
11829674--11829723	26	1.9	26	95	0	91	50	12	14	24	1.76
11840420--11840467	19	2.5	19	96	0	87	50	4	6	39	1.47
11843745--11843828	31	2.8	31	76	7	75	25	14	8	52	1.69
11844598--11844767	63	2.7	63	93	0	277	38	16	15	30	1.89
11846066--11846146	42	1.9	42	97	0	153	28	27	20	23	1.99
11849718--11849751	16	2.1	16	89	10	52	29	0	0	70	0.87
11852184--11852282	21	4.7	21	80	0	90	17	23	16	43	1.87
11861675--11861773	23	4.3	23	84	5	146	31	25	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11863591--11863615	12	2.1	12	100	0	50	48	0	0	52	1.00
11863676--11863700	13	1.9	13	100	0	50	56	0	0	44	0.99
11866977--11867009	18	1.9	18	88	11	52	33	0	12	54	1.37
11868147--11868183	19	1.9	19	94	0	65	62	0	2	35	1.10
11869773--11869824	16	3.2	16	94	0	86	28	0	36	34	1.58
11869805--11869914	45	2.6	43	80	9	129	33	5	29	31	1.80
11870041--11870082	15	2.7	16	82	14	52	52	2	0	45	1.13
11870050--11870091	15	2.9	15	82	10	52	52	0	0	47	1.00
11870257--11870317	28	2.2	28	85	5	81	50	3	0	45	1.17
11870257--11870398	44	3.2	42	71	18	126	48	2	2	46	1.28
11870223--11870438	90	2.4	91	87	3	310	47	3	3	45	1.36
11878113--11878160	17	2.8	17	90	6	71	35	6	2	56	1.36
11878457--11878497	21	2.0	21	85	0	55	36	24	12	26	1.91
11887806--11887891	43	2.0	43	97	0	163	20	26	0	52	1.47
11887806--11887864	15	4.1	15	70	14	52	20	27	0	52	1.47
11887796--11887876	18	4.1	18	70	26	65	22	27	0	50	1.49
11888546--11888584	19	2.1	18	85	4	51	33	17	0	48	1.48
11889479--11889526	3	16.0	3	100	0	96	0	33	0	66	0.92
11892635--11892682	18	2.7	18	96	0	87	35	12	12	39	1.81
11893112--11893350	72	3.3	72	92	1	392	23	5	15	55	1.61
11895358--11895396	13	2.9	14	81	11	55	33	23	7	35	1.83
11895980--11896007	13	2.2	13	100	0	56	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11896813--11896881	30	2.3	30	87	5	95	31	10	27	30	1.90
11905047--11906361	133	9.9	133	89	2	1554	28	19	23	28	1.98
11906175--11906356	44	4.2	45	69	9	117	31	19	22	26	1.97
11926061--11926104	11	4.0	11	80	11	54	81	0	6	11	0.86
11929192--11929947	379	2.0	379	98	0	1467	34	19	14	31	1.92
11938832--11938879	18	2.6	18	78	15	53	29	6	0	64	1.18
11939865--11939966	49	2.1	49	84	0	132	22	26	6	44	1.78
11940531--11940567	9	4.1	9	85	0	56	48	13	8	29	1.71
11940920--11940980	17	3.4	17	76	15	52	24	27	0	47	1.52
11941101--11941147	17	2.8	17	79	20	62	36	2	6	55	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218