genome.fa.s23.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  155  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47125559--47125591	16	2.1	16	94	0	57	12	9	12	66	1.44
47125582--47125611	7	4.3	7	100	0	60	13	0	13	73	1.10
47126104--47126155	8	6.2	8	82	12	61	34	0	3	61	1.14
47128032--47128116	39	2.2	39	93	0	143	15	17	34	32	1.91
47130121--47130212	25	3.7	24	77	8	78	17	26	20	35	1.95
47130228--47130299	25	2.9	25	77	4	74	20	27	19	31	1.97
47130400--47130441	21	2.0	22	81	13	52	35	4	19	40	1.72
47131110--47131222	42	2.7	42	87	1	154	23	25	32	18	1.97
47154378--47154415	18	2.1	18	95	0	67	23	26	10	39	1.87
47154667--47154711	21	2.1	21	100	0	90	35	48	15	0	1.45
47157951--47158347	126	3.2	126	88	2	593	28	17	16	37	1.91
47158420--47158534	34	3.5	33	80	9	144	40	17	0	42	1.49
47158586--47158631	22	2.0	23	84	12	60	47	41	0	10	1.38
47159867--47160088	111	2.0	111	99	0	435	32	13	7	45	1.72
47165934--47166005	21	3.4	21	69	14	58	44	0	18	37	1.50
47165924--47166003	42	1.9	42	92	0	133	43	0	20	36	1.52
47173979--47174016	16	2.4	16	90	0	58	44	2	0	52	1.14
47176785--47176849	21	3.3	19	73	14	51	56	3	9	30	1.46
47178541--47178961	87	4.8	87	75	6	307	23	24	22	29	1.99
47178456--47178989	131	4.1	131	95	0	926	23	24	22	29	1.99
47178497--47178874	175	2.2	175	80	2	402	23	24	21	29	1.99
47178455--47179012	44	12.8	44	74	6	427	23	24	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47178953--47179369	46	9.3	45	74	8	294	28	22	20	29	1.98
47178928--47179597	44	15.0	46	71	9	350	26	22	20	29	1.99
47179029--47179597	134	4.3	134	84	4	638	26	22	21	29	1.99
47180822--47180873	7	7.7	7	77	16	56	15	13	0	71	1.15
47180819--47180873	20	2.7	21	83	5	78	16	14	0	69	1.20
47186522--47186586	21	3.3	19	73	14	51	56	3	9	30	1.46
47190329--47190551	91	2.5	89	84	7	281	37	21	7	33	1.82
47190580--47190624	19	2.4	19	88	7	65	62	0	2	35	1.08
47190912--47190977	10	6.9	10	72	10	50	40	1	0	57	1.08
47190912--47190976	19	3.4	19	78	18	64	40	1	0	58	1.07
47190988--47191039	10	5.3	10	75	13	54	21	3	0	75	0.97
47190990--47191039	19	2.6	19	90	9	75	22	4	0	74	0.99
47193310--47193348	18	2.1	18	85	9	51	46	7	0	46	1.31
47193318--47193357	19	2.1	19	86	9	55	45	7	0	47	1.31
47193667--47193704	19	2.0	19	85	10	51	47	10	2	39	1.52
47196675--47196740	23	3.0	23	72	17	59	48	3	7	40	1.47
47196717--47196748	12	2.4	14	85	15	50	43	0	9	46	1.35
47206876--47206944	29	2.4	29	78	9	79	37	10	18	33	1.85
47207628--47207766	32	4.4	32	86	0	181	37	20	21	20	1.95
47207941--47208013	24	3.0	24	75	0	65	41	23	12	23	1.88
47208054--47208157	27	3.9	27	76	0	109	25	19	20	34	1.96
47208055--47208187	54	2.5	54	79	0	131	24	18	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47208056--47208231	27	6.5	27	74	1	102	25	17	20	36	1.94
47209811--47210151	51	6.7	51	75	9	279	28	16	26	29	1.97
47209811--47210154	102	3.4	101	82	7	385	28	16	26	29	1.97
47217398--47217626	36	6.6	35	73	13	161	24	17	15	42	1.88
47217444--47217623	67	2.7	66	82	8	202	23	18	16	42	1.89
47217387--47217623	35	6.8	35	72	9	126	23	18	15	42	1.89
47221595--47221628	17	1.9	18	88	5	52	17	0	2	79	0.86
47222502--47222570	21	3.3	21	78	11	70	24	31	21	21	1.98
47229908--47229944	18	2.1	18	89	0	56	29	8	2	59	1.40
47234068--47234415	51	6.9	51	77	5	323	29	25	14	30	1.95
47234068--47234416	102	3.4	102	86	2	454	30	24	14	30	1.95
47235608--47235758	41	3.7	41	90	0	230	23	25	21	30	1.99
47235545--47235673	66	1.9	67	84	4	172	30	25	19	24	1.98
47241892--47241928	9	4.1	9	85	0	56	29	8	13	48	1.71
47241982--47242012	9	3.4	9	90	0	53	38	22	12	25	1.90
47243612--47243645	15	2.5	13	90	9	50	0	14	5	79	0.91
47246595--47246645	23	2.5	20	75	25	52	9	13	0	76	1.02
47247219--47247383	62	2.7	61	80	2	186	19	23	30	26	1.98
47251953--47251997	23	2.0	23	86	8	65	33	11	20	35	1.88
47257588--47257658	20	3.5	20	81	12	90	26	2	16	53	1.57
47257576--47257658	20	4.2	19	73	19	64	27	3	16	51	1.61
47257576--47257658	41	2.1	38	86	6	112	27	3	16	51	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47257625--47257721	28	3.4	28	84	4	124	24	1	18	55	1.49
47257585--47257722	9	14.7	9	72	24	99	26	1	17	55	1.51
47258145--47258182	18	2.1	18	85	9	51	42	0	21	36	1.53
47263167--47263255	25	3.7	25	75	10	96	16	26	23	32	1.96
47263184--47263276	47	2.0	46	87	10	136	18	25	21	34	1.96
47263184--47263276	46	2.0	47	87	10	138	18	25	21	34	1.96
47266867--47266906	21	1.9	21	89	0	62	62	7	25	5	1.42
47267339--47267396	29	2.0	29	83	6	73	25	18	15	39	1.91
47267607--47267721	22	4.8	22	70	22	81	23	30	0	46	1.53
47267650--47267777	51	2.5	50	85	7	159	31	20	0	47	1.56
47269573--47269612	18	2.2	19	90	4	64	22	35	7	35	1.82
47270000--47270257	25	10.7	25	74	17	224	41	1	13	43	1.52
47270000--47270257	120	2.2	120	95	1	464	41	1	13	43	1.52
47270265--47270308	13	3.4	13	90	0	70	50	22	0	27	1.50
47270334--47270439	13	8.5	13	76	10	87	47	27	0	25	1.53
47270267--47270436	61	2.7	61	87	10	236	47	27	0	25	1.52
47270316--47270461	61	2.5	57	86	9	183	46	27	0	26	1.53
47270360--47271058	87	8.2	87	88	6	990	46	25	0	28	1.55
47270421--47271030	29	21.4	31	72	20	423	45	25	0	28	1.55
47270463--47270614	24	6.0	24	76	14	112	44	26	0	28	1.54
47270628--47270782	25	6.0	23	72	20	103	45	25	0	29	1.53
47270709--47270782	24	3.0	23	79	11	76	44	24	0	31	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47270541--47271058	255	2.0	255	89	5	730	45	25	0	28	1.55
47270796--47270869	24	3.0	23	79	11	76	44	25	0	29	1.54
47270903--47270956	25	2.2	24	87	9	74	44	29	0	25	1.54
47270970--47271057	29	3.5	24	72	15	79	45	23	1	29	1.60
47271004--47271067	23	2.8	23	80	0	74	46	21	1	29	1.61
47271064--47271288	116	1.9	116	88	3	337	38	9	10	41	1.72
47274315--47274667	126	2.8	125	87	1	501	32	22	15	29	1.95
47277185--47277264	39	2.1	39	97	0	151	16	23	13	46	1.83
47278731--47278762	16	2.0	16	93	0	55	21	18	31	28	1.97
47279187--47279233	22	2.1	22	92	0	76	19	31	0	48	1.49
47286179--47286210	11	2.9	11	95	0	55	31	0	0	68	0.90
47288828--47288855	10	2.8	10	100	0	56	67	0	0	32	0.91
47289226--47289266	21	2.0	21	85	0	55	34	0	0	65	0.93
47289363--47289592	89	2.7	86	80	11	238	35	11	19	33	1.88
47289453--47289620	84	2.0	83	85	5	223	34	10	19	35	1.86
47290727--47291608	248	3.6	247	88	3	1229	42	11	14	32	1.81
47303147--47303311	49	3.3	50	72	13	142	38	22	25	13	1.90
47303147--47303311	24	6.6	26	73	10	139	38	22	25	13	1.90
47307245--47307287	18	2.3	19	88	8	61	72	2	0	25	0.97
47307409--47307475	10	7.0	10	73	10	59	65	4	0	29	1.12
47307409--47307445	18	1.9	18	89	10	56	67	2	0	29	1.04
47307314--47307474	49	3.3	47	79	15	159	60	5	1	31	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47309968--47310008	20	2.0	21	86	9	59	36	14	9	39	1.79
47311263--47311434	50	3.4	52	85	7	214	41	12	13	31	1.82
47313621--47313656	18	2.1	18	89	5	56	16	11	13	58	1.63
47316230--47316311	40	2.0	40	92	0	137	40	18	14	26	1.89
47320137--47320209	19	3.7	19	76	20	71	61	0	4	34	1.15
47320214--47320242	15	2.0	15	93	6	51	58	0	6	34	1.25
47321645--47321686	21	2.0	21	100	0	84	14	9	19	57	1.64
47348137--47348178	21	2.0	21	85	0	57	42	16	4	35	1.69
47352990--47353177	51	3.7	50	82	3	207	31	27	15	25	1.96
47353091--47353123	14	2.5	13	90	9	50	39	27	9	24	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218