genome.fa.s23.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  140  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42765891--42766042	47	3.2	47	83	2	180	44	18	13	23	1.85
42766010--42766247	22	10.5	22	68	10	120	41	18	14	25	1.88
42766086--42766132	11	4.3	11	78	10	51	44	21	6	27	1.76
42765966--42766247	69	4.1	69	90	0	422	42	19	13	24	1.87
42766898--42766926	14	2.1	14	100	0	58	27	27	27	17	1.97
42775204--42775233	5	6.0	5	100	0	60	80	0	0	20	0.72
42777914--42777970	25	2.3	25	78	3	71	15	28	19	36	1.92
42785489--42785514	6	4.3	6	100	0	52	15	34	0	50	1.45
42789539--42789597	29	2.0	29	81	12	68	28	28	1	40	1.66
42793944--42794022	37	2.1	37	88	4	115	25	30	18	25	1.98
42794141--42794514	47	8.1	47	93	2	580	28	29	9	32	1.89
42794355--42794428	22	3.3	22	63	10	60	28	28	10	32	1.91
42794141--42794514	92	4.0	92	89	5	558	28	29	9	32	1.89
42798102--42798222	43	2.9	40	80	11	136	23	27	22	26	2.00
42798095--42798308	83	2.6	85	78	12	214	24	28	21	26	1.99
42798610--42798688	29	2.7	29	86	5	106	27	32	15	24	1.95
42798670--42798772	43	2.4	43	100	0	206	26	35	15	22	1.94
42798677--42798879	107	1.9	107	98	0	397	28	33	14	23	1.94
42798784--42798924	43	3.2	43	96	2	255	28	33	14	24	1.94
42800782--42800860	37	2.1	37	88	4	115	25	30	18	25	1.98
42800979--42801357	47	8.1	47	93	0	598	28	30	9	31	1.89
42815047--42815116	34	2.1	34	82	15	85	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42815086--42815140	24	2.3	25	78	12	62	54	0	1	43	1.10
42821420--42821477	30	1.9	31	85	3	82	37	8	5	48	1.56
42822101--42822133	14	2.4	14	90	5	50	57	0	6	36	1.23
42822398--42822520	31	4.1	31	77	9	94	39	12	10	38	1.77
42822405--42822478	31	2.4	31	88	2	105	39	13	10	36	1.80
42822823--42822867	23	2.0	23	100	0	90	22	4	22	51	1.66
42828198--42828229	15	2.1	15	94	0	55	21	3	6	68	1.26
42829937--42829984	12	4.1	12	75	24	57	50	2	0	47	1.12
42832114--42832186	26	2.8	27	85	6	96	39	6	20	32	1.79
42841965--42842031	29	2.3	29	78	0	71	22	14	19	43	1.87
42850131--42850169	3	13.0	3	100	0	78	33	0	0	66	0.92
42860476--42860508	17	1.9	17	100	0	66	12	15	18	54	1.71
42861237--42861304	21	3.2	20	70	25	59	23	11	22	42	1.86
42861227--42861325	43	2.3	43	84	3	137	27	14	17	41	1.87
42861876--42862019	47	3.1	47	68	18	131	45	3	2	48	1.34
42861846--42862060	91	2.4	90	90	4	342	46	4	3	45	1.38
42862053--42862266	59	3.7	58	72	12	197	43	2	2	50	1.29
42862167--42862196	15	1.9	16	93	6	53	43	0	6	50	1.28
42862067--42862356	120	2.4	120	97	0	544	44	2	3	49	1.32
42862028--42862356	120	2.7	127	86	10	454	45	2	3	48	1.33
42862140--42862327	61	3.1	61	70	11	197	44	2	4	48	1.35
42862188--42862222	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42862242--42862288	24	2.0	24	84	15	64	40	4	4	51	1.41
42862141--42862324	57	3.1	58	67	25	157	44	2	4	48	1.36
42862498--42862595	45	2.2	45	85	5	128	34	29	5	30	1.79
42870176--42870214	20	2.0	20	85	10	53	23	5	10	61	1.48
42871578--42871614	9	4.1	9	85	0	56	48	13	8	29	1.71
42871829--42871888	30	2.0	31	86	3	86	21	40	0	38	1.54
42884730--42885003	35	8.1	34	82	6	308	41	17	22	18	1.90
42884730--42885003	67	4.0	67	87	4	331	41	17	22	18	1.90
42884740--42885003	102	2.6	102	90	1	408	40	18	23	18	1.91
42885297--42885330	13	2.5	13	95	4	59	44	8	5	41	1.60
42889229--42889273	21	2.1	22	84	12	58	66	8	11	13	1.44
42892070--42892265	35	5.8	35	85	5	242	40	17	23	17	1.91
42892070--42892264	67	2.9	68	88	4	272	40	17	23	17	1.91
42892070--42892265	102	1.9	102	94	0	347	40	17	23	17	1.91
42892341--42892374	13	2.5	13	95	4	59	41	5	8	44	1.60
42892668--42892930	35	7.8	34	82	7	297	19	22	17	41	1.91
42892668--42892930	67	3.9	66	84	9	309	19	22	17	41	1.91
42899950--42900141	40	4.8	39	83	4	249	26	28	20	25	1.99
42899949--42900141	80	2.4	80	92	0	332	26	28	20	24	1.99
42902593--42902637	20	2.1	22	84	12	58	13	11	8	66	1.44
42906959--42906992	13	2.5	13	95	4	59	41	5	8	44	1.60
42907291--42907559	35	8.0	34	82	6	307	18	21	17	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42907286--42907549	102	2.6	102	90	1	408	18	22	17	40	1.91
42907286--42907559	67	4.0	68	88	4	333	18	21	17	41	1.90
42910189--42910222	13	2.5	13	95	4	59	41	5	8	44	1.60
42910516--42910789	35	8.1	34	81	7	299	18	21	17	41	1.90
42910516--42910779	102	2.6	102	89	1	399	18	22	17	40	1.91
42910516--42910789	67	4.0	68	87	4	333	18	21	17	41	1.90
42912348--42912413	28	2.3	28	92	2	105	40	12	22	24	1.88
42912402--42912634	29	8.0	29	75	6	132	36	12	27	23	1.91
42912459--42912531	30	2.5	30	86	6	96	35	6	30	27	1.83
42912489--42912614	59	2.1	59	82	5	157	38	11	26	24	1.89
42912348--42912565	117	1.9	115	88	1	328	37	11	27	23	1.90
42912346--42912619	117	2.4	116	80	4	327	37	12	26	24	1.90
42912407--42912635	88	2.6	87	73	9	212	36	13	27	22	1.91
42912515--42912633	59	2.0	58	85	1	157	37	13	26	22	1.91
42916222--42916286	32	2.0	32	93	0	112	61	4	0	33	1.16
42916627--42916697	22	3.3	22	70	7	74	43	12	19	23	1.86
42916626--42916725	42	2.4	42	93	0	164	45	15	18	22	1.85
42916649--42916717	20	3.3	20	68	7	57	46	17	15	20	1.84
42916638--42916705	22	3.2	22	67	23	63	45	14	19	20	1.85
42925373--42925496	25	5.0	25	69	14	96	31	20	23	25	1.98
42925373--42925496	50	2.5	50	82	3	153	31	20	23	25	1.98
42931368--42931441	20	3.8	19	75	10	69	14	28	21	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42931407--42931452	20	2.3	21	77	11	60	23	23	17	34	1.96
42932358--42932391	18	1.9	18	88	5	52	32	17	0	50	1.47
42939170--42939233	6	10.3	6	72	24	53	15	3	3	78	1.01
42939170--42939249	25	3.1	26	94	5	144	16	3	3	76	1.08
42945744--42945838	47	2.0	47	100	0	190	36	6	27	29	1.81
42945872--42945914	22	2.0	21	82	13	52	60	2	4	32	1.30
42946791--42946962	45	3.9	43	74	9	141	41	14	22	20	1.89
42947051--42947152	44	2.3	44	91	0	159	18	15	23	42	1.89
42950427--42950469	11	3.9	11	84	0	59	41	4	6	46	1.51
42957701--42958077	60	6.3	60	78	3	382	19	22	26	31	1.98
42957701--42958077	180	2.1	180	80	5	433	19	22	26	31	1.98
42960357--42960485	49	2.6	48	72	14	120	17	15	35	31	1.91
42966481--42966513	14	2.4	14	94	0	57	75	3	0	21	0.93
42983498--42983689	63	3.1	62	84	0	240	25	24	29	20	1.99
42987141--42987218	29	2.7	28	84	11	104	25	15	30	28	1.96
42987171--42987497	173	1.9	174	93	0	566	30	14	24	31	1.94
42995275--42995352	29	2.7	28	82	11	95	25	14	30	29	1.94
42995305--42995629	171	1.9	174	91	1	539	30	13	24	31	1.94
43000706--43000836	63	2.1	63	83	0	163	25	25	25	22	2.00
43000738--43000969	63	3.7	63	78	5	229	25	23	28	23	2.00
43015516--43015572	15	3.8	15	73	13	55	61	0	3	35	1.13
43015516--43015569	23	2.3	24	79	20	62	62	0	3	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43016709--43016832	43	2.9	43	82	1	160	29	16	16	38	1.90
43016981--43017109	25	5.2	25	87	0	150	32	6	24	36	1.81
43016981--43017139	75	2.2	75	82	5	200	33	7	23	34	1.83
43017205--43017249	19	2.6	18	86	10	58	35	22	13	28	1.92
43017565--43017718	45	3.4	45	78	0	148	33	11	21	33	1.90
43017567--43017718	22	6.8	22	71	7	83	33	11	21	32	1.90
43018281--43018323	17	2.5	17	88	0	59	27	2	18	51	1.59
43018335--43018372	17	2.2	17	86	9	51	23	10	21	44	1.83
43020332--43020516	51	3.7	50	78	6	194	29	27	18	24	1.98
43020331--43020514	101	1.8	101	88	3	280	30	26	18	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218