genome.fa.s23.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  128  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38977022--38977103	29	2.8	30	66	17	73	31	8	12	47	1.71
38985597--38985636	20	2.0	21	90	5	64	25	0	17	57	1.40
38985598--38985641	20	2.2	20	84	8	54	25	0	18	56	1.41
38986120--38986189	29	2.5	28	88	4	104	28	0	18	52	1.45
38986127--38986187	29	2.1	29	96	0	113	26	0	18	55	1.42
38988661--38988811	27	5.6	27	81	7	171	29	28	15	26	1.96
38998497--38998539	19	2.3	19	96	4	79	39	13	4	41	1.66
38999292--38999321	12	2.5	12	88	0	51	6	23	40	30	1.80
39005750--39005805	16	3.5	16	92	0	85	41	3	33	21	1.70
39005787--39005921	46	3.0	46	92	2	220	28	5	30	35	1.79
39009937--39010030	45	2.1	45	91	0	152	31	24	18	25	1.97
39010027--39010222	51	3.9	50	78	4	205	30	28	17	23	1.97
39012762--39012795	16	2.1	17	88	5	52	41	20	0	38	1.53
39015045--39015231	51	3.7	51	77	5	182	26	16	25	32	1.96
39015237--39015331	45	2.1	45	90	0	154	27	18	23	30	1.98
39020959--39021102	51	2.8	51	81	2	173	25	18	25	31	1.97
39021097--39021187	45	2.0	45	89	0	137	26	17	24	31	1.97
39039880--39039983	46	2.3	46	86	3	138	37	20	15	26	1.92
39039880--39040025	46	3.2	46	80	7	136	34	20	17	27	1.95
39042208--39042298	40	2.3	40	84	0	128	30	19	15	34	1.93
39051382--39051411	2	15.0	2	92	0	51	0	0	46	53	1.00
39053118--39053260	50	2.8	50	80	4	171	23	18	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39053113--39053289	51	3.5	50	79	4	212	23	16	27	31	1.96
39059996--39060043	25	1.9	25	95	0	87	22	25	16	35	1.95
39064941--39064979	17	2.3	17	90	0	60	35	20	5	38	1.75
39077843--39077871	13	2.1	14	93	6	51	34	20	0	44	1.52
39084123--39085593	502	3.0	501	94	1	2549	34	21	15	29	1.94
39088488--39088527	20	2.0	20	90	0	62	72	5	7	15	1.24
39094732--39094823	37	2.5	37	83	1	114	19	15	26	39	1.91
39106704--39106748	19	2.4	19	96	3	83	46	8	15	28	1.76
39110131--39110192	27	2.2	28	94	2	108	53	4	0	41	1.22
39110122--39110197	27	2.8	26	79	15	84	51	5	1	42	1.33
39111155--39111220	34	1.9	34	90	0	105	42	12	7	37	1.71
39112368--39112404	17	2.2	17	90	9	58	10	16	2	70	1.27
39116119--39116163	23	2.0	23	87	8	67	64	4	0	31	1.13
39116109--39116165	21	2.7	20	72	20	53	61	7	0	31	1.23
39116412--39116459	25	1.9	25	82	0	60	27	4	2	66	1.21
39120689--39120741	19	2.8	18	83	8	61	30	7	0	62	1.23
39120746--39120788	18	2.4	17	81	11	50	46	2	2	48	1.27
39120750--39120794	19	2.3	20	81	14	58	40	2	4	53	1.33
39120949--39120983	18	1.9	18	100	0	70	51	11	17	20	1.75
39123404--39123436	17	1.9	17	93	0	57	51	0	0	48	1.00
39134272--39134369	27	3.5	28	90	2	135	26	13	28	31	1.94
39134300--39134382	27	3.0	27	87	5	96	30	12	25	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39134272--39134383	28	4.0	27	83	6	98	28	12	25	33	1.92
39151344--39151511	31	5.3	31	67	11	99	42	7	3	47	1.48
39156566--39156737	51	3.4	50	80	7	163	41	12	14	31	1.83
39156628--39156724	50	1.9	51	91	2	160	40	13	15	30	1.86
39157567--39157731	46	3.6	46	86	4	219	42	16	19	21	1.89
39157700--39157914	45	4.8	45	91	1	326	34	17	22	25	1.96
39157838--39158040	45	4.5	45	80	7	178	42	16	21	19	1.89
39157700--39157962	90	2.9	90	85	3	244	36	17	22	23	1.94
39157700--39157947	135	1.8	135	83	5	331	36	17	22	23	1.94
39165972--39166104	72	1.9	71	90	4	214	23	18	23	35	1.96
39168125--39168173	24	2.0	25	84	11	66	63	8	6	22	1.44
39168369--39168426	8	6.8	8	76	21	55	81	3	3	12	0.95
39169819--39169855	17	2.2	17	90	0	56	16	0	10	72	1.10
39170011--39170192	89	2.1	86	83	5	222	30	19	17	32	1.95
39169980--39170466	45	10.8	45	70	12	140	30	22	16	30	1.96
39170210--39170466	44	5.7	44	72	11	207	31	23	16	28	1.96
39170068--39170421	136	2.6	136	86	0	483	31	21	15	31	1.94
39170250--39170558	92	3.4	91	73	11	299	32	22	15	30	1.95
39170208--39170617	181	2.3	181	89	0	615	31	21	16	30	1.95
39170224--39170508	85	3.2	84	72	12	264	32	21	16	28	1.95
39171554--39171593	17	2.3	18	91	4	64	0	12	2	85	0.71
39171553--39171603	14	3.5	13	82	17	57	1	13	1	82	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39171562--39171602	21	2.0	21	85	9	57	2	12	2	82	0.86
39171692--39171724	14	2.3	15	89	5	50	27	33	12	27	1.92
39174506--39174605	43	2.3	43	77	13	107	22	22	25	31	1.98
39175589--39175882	23	12.7	23	83	2	356	26	12	20	39	1.89
39184187--39184216	3	10.0	3	92	0	51	63	0	3	33	1.11
39184369--39184425	3	19.3	3	75	10	55	73	0	1	24	0.92
39184366--39184425	23	2.8	22	83	14	72	73	0	1	25	0.93
39184363--39184458	35	2.8	36	80	7	108	72	3	1	22	1.04
39184369--39184464	29	3.3	28	80	12	97	72	3	1	22	1.04
39184363--39184426	6	10.8	6	81	6	60	73	0	1	25	0.92
39184420--39184467	19	2.6	18	83	9	69	70	10	0	18	1.15
39185148--39185184	19	1.9	19	100	0	74	29	10	27	32	1.90
39188064--39188115	11	4.3	11	73	21	50	73	1	1	23	1.04
39189588--39189632	23	2.0	23	91	8	74	48	13	11	26	1.75
39191590--39191645	24	2.3	24	96	0	103	35	21	26	16	1.94
39191590--39191667	24	3.2	24	85	7	86	34	23	25	16	1.95
39197078--39197119	18	2.3	18	80	8	50	40	4	9	45	1.58
39200667--39200709	20	2.2	20	86	0	59	53	2	30	13	1.53
39211184--39211232	22	2.4	22	80	10	59	22	8	10	59	1.56
39219731--39219788	20	2.9	20	87	5	73	22	27	0	50	1.50
39228144--39228200	25	2.3	23	78	18	62	42	0	5	52	1.24
39231348--39231435	34	2.7	34	78	5	92	50	12	1	36	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39231448--39231544	41	2.3	41	83	3	122	43	30	1	24	1.61
39231878--39232048	86	2.0	86	96	0	315	42	10	9	37	1.73
39232205--39232375	86	2.0	86	97	0	324	41	10	10	37	1.74
39231789--39232451	327	2.0	327	98	0	1272	38	15	14	31	1.88
39235662--39235725	25	2.6	25	82	7	69	4	23	3	68	1.23
39235680--39235726	24	1.9	25	91	4	78	4	17	2	76	1.04
39250017--39250249	50	4.7	50	85	1	306	21	31	21	25	1.98
39250267--39250362	44	2.2	44	96	1	174	25	21	12	40	1.88
39250351--39250678	164	2.0	164	99	0	647	41	20	8	29	1.81
39254558--39254584	12	2.2	12	100	0	54	44	22	0	33	1.53
39256608--39256898	150	1.9	150	84	4	381	20	31	21	26	1.98
39256600--39256898	50	6.0	50	84	3	343	20	31	21	26	1.98
39261232--39261642	47	8.7	47	93	0	644	33	8	29	29	1.86
39261761--39261839	37	2.1	37	90	0	122	24	18	31	25	1.98
39266488--39266518	4	7.8	4	92	0	53	22	3	0	74	0.96
39269669--39269718	25	2.0	25	100	0	100	44	24	16	16	1.86
39272007--39272048	18	2.3	18	100	0	84	26	19	14	40	1.89
39276424--39276488	22	3.0	22	81	4	69	43	16	21	18	1.88
39276485--39276582	32	3.1	31	77	4	97	38	18	22	20	1.93
39276773--39276849	24	3.2	24	86	0	100	49	24	6	19	1.72
39276811--39276882	24	3.0	23	81	4	81	45	23	5	25	1.74
39276867--39276919	26	2.0	26	85	3	70	33	22	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39276866--39276931	26	2.5	26	77	0	69	33	22	15	28	1.94
39279567--39280095	131	4.0	131	79	3	524	33	15	12	37	1.86
39288461--39288510	19	2.4	22	83	12	70	20	6	8	66	1.40
39290790--39290828	19	2.1	19	85	9	53	51	5	5	38	1.46
39291430--39291494	28	2.3	29	76	10	73	50	4	1	43	1.32
39291509--39291544	18	2.1	18	89	5	56	50	0	0	50	1.00
39294931--39294960	13	2.3	13	94	0	51	6	10	16	66	1.41
39296551--39296604	18	3.0	18	74	15	58	27	9	37	25	1.87
39297557--39297776	102	2.2	102	94	0	386	41	1	5	50	1.36
39297493--39297675	64	3.1	58	69	20	162	42	2	4	50	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218