genome.fa.s23.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  111  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32727643--32727742	20	5.1	20	75	6	105	10	29	21	40	1.85
32731125--32731166	20	2.0	21	86	13	61	64	2	2	30	1.19
32733255--32733322	35	2.0	33	83	13	84	26	4	4	64	1.31
32733690--32733727	19	2.0	19	94	0	67	28	10	0	60	1.30
32736500--32736531	13	2.4	13	94	5	55	84	0	15	0	0.63
32736498--32736531	15	2.3	15	94	0	59	85	0	14	0	0.60
32738826--32738882	18	3.2	18	92	0	96	24	22	29	22	1.99
32753776--32753932	43	3.7	43	80	1	181	31	24	15	28	1.96
32760561--32760624	27	2.4	26	84	2	83	39	12	17	31	1.87
32762276--32762303	14	2.0	14	100	0	56	21	35	14	28	1.92
32777510--32777540	11	2.8	11	90	0	53	32	0	0	67	0.91
32789988--32790028	17	2.3	18	87	4	57	51	0	21	26	1.48
32800630--32800659	15	1.9	16	93	6	53	16	16	6	60	1.56
32808889--32808984	48	2.0	48	83	0	120	43	19	22	13	1.86
32810278--32810604	44	7.4	44	84	0	393	29	22	26	21	1.99
32810272--32810604	88	3.8	88	91	0	531	30	21	25	21	1.98
32810636--32810886	88	2.9	88	93	1	414	25	23	26	23	2.00
32810626--32810845	44	5.0	44	64	11	128	25	23	25	24	2.00
32813821--32813928	43	2.6	42	84	11	125	48	15	19	16	1.82
32818002--32818026	3	8.3	3	100	0	50	68	0	32	0	0.90
32831954--32832098	45	3.2	46	81	4	125	40	13	20	25	1.90
32836656--32836883	32	7.2	32	80	4	212	35	22	22	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32836656--32836883	96	2.4	95	80	5	262	35	22	22	20	1.96
32836890--32836943	26	2.1	26	89	0	81	37	25	20	16	1.93
32836925--32836994	27	2.7	26	84	10	81	32	22	24	20	1.97
32837059--32837141	24	3.5	24	79	0	103	46	22	6	24	1.74
32837161--32837248	27	3.3	27	76	4	90	29	20	15	34	1.94
32837163--32837382	54	4.1	54	82	4	250	24	20	19	36	1.95
32837176--32837372	27	7.3	27	78	3	173	23	20	20	35	1.96
32857096--32857223	32	4.0	32	82	0	166	39	21	20	19	1.93
32857258--32857330	27	2.7	27	83	6	87	32	24	23	19	1.97
32857395--32857452	24	2.4	24	91	0	98	46	24	8	20	1.78
32857479--32857702	27	8.3	27	72	3	139	23	21	17	37	1.94
32857493--32857703	81	2.6	81	78	3	228	23	21	17	37	1.93
32857544--32857749	27	7.7	27	75	5	143	22	19	19	38	1.94
32857546--32857727	81	2.2	80	79	5	195	23	21	17	37	1.94
32857553--32857749	54	3.7	55	74	12	169	22	20	18	38	1.93
32861295--32861359	22	3.0	22	77	4	60	43	18	21	16	1.88
32861351--32861458	32	3.4	32	80	1	128	37	23	21	17	1.94
32861456--32861513	26	2.2	26	84	0	80	32	24	22	20	1.98
32861602--32861683	24	3.4	24	81	0	92	48	23	6	21	1.72
32861673--32861725	26	2.0	27	85	3	72	35	22	18	22	1.95
32861721--32861903	27	6.8	27	79	3	109	27	18	15	38	1.91
32861731--32861957	54	4.2	54	79	4	167	26	19	15	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32861705--32861957	81	3.1	80	82	8	266	26	20	16	37	1.93
32861801--32862037	27	8.8	27	84	2	273	24	18	18	37	1.93
32866801--32866853	20	2.7	20	77	11	54	35	13	26	24	1.92
32869812--32869951	40	3.5	40	70	8	117	32	22	15	30	1.94
32870834--32870890	25	2.3	23	80	11	60	0	21	5	73	1.02
32873931--32873992	8	8.0	8	78	10	58	54	1	1	41	1.19
32877720--32877781	27	2.3	27	78	10	65	46	1	1	50	1.20
32879478--32879509	15	2.0	17	88	11	50	43	18	0	37	1.51
32881773--32881800	3	9.3	3	100	0	56	32	32	0	35	1.58
32885712--32885775	14	4.3	15	76	7	60	40	0	0	59	0.97
32885754--32885808	29	2.0	28	83	13	71	49	0	5	45	1.25
32885737--32885792	29	1.9	29	85	0	76	50	0	0	50	1.00
32887276--32887412	68	2.0	69	88	1	204	29	6	8	55	1.54
32888300--32888349	16	2.9	17	77	8	57	6	14	4	76	1.13
32891436--32891460	7	3.6	7	100	0	50	88	0	12	0	0.53
32896974--32897060	23	3.8	23	96	0	165	42	5	28	22	1.77
32897779--32898585	405	2.0	401	89	1	1247	42	15	15	26	1.86
32898845--32898884	20	2.0	20	85	5	53	22	30	12	35	1.91
32900580--32900718	43	3.2	42	79	5	143	61	5	2	30	1.31
32900625--32900688	33	1.9	33	87	6	94	64	6	1	28	1.27
32900858--32900910	20	2.7	21	82	8	58	32	0	5	62	1.19
32900846--32900895	19	2.7	19	75	6	50	36	0	4	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32907200--32907229	9	3.2	9	90	9	51	90	0	0	10	0.47
32907200--32907229	10	3.1	10	95	4	53	90	0	0	10	0.47
32908688--32909938	132	9.5	132	90	1	1784	27	25	19	27	1.98
32908688--32909938	396	3.2	395	92	1	1976	27	25	19	27	1.98
32912182--32912220	4	9.5	4	83	5	51	48	0	23	28	1.51
32926578--32926621	13	3.4	13	87	0	61	20	31	34	13	1.92
32927188--32927221	11	3.0	11	91	4	50	82	8	8	0	0.85
32928581--32928630	24	2.1	24	84	0	64	18	40	4	38	1.69
32945380--32945412	14	2.3	15	94	5	59	39	0	0	60	0.97
32951397--32951452	28	2.0	28	92	0	94	35	10	25	28	1.89
32954209--32954276	26	2.5	27	83	7	102	27	33	14	23	1.94
32954319--32954475	74	2.1	74	97	0	296	29	22	12	34	1.92
32955129--32955202	38	1.9	38	94	0	130	43	18	10	27	1.83
32962495--32962523	12	2.3	13	94	5	51	65	6	6	20	1.40
32964785--32964820	18	2.0	18	100	0	72	38	16	16	27	1.90
32966658--32966698	13	3.2	13	83	10	57	75	0	0	24	0.80
32970335--32970384	21	2.4	21	82	0	64	20	16	18	46	1.85
32970453--32970540	21	4.2	21	83	0	113	17	20	19	43	1.88
32970269--32970505	118	2.0	120	92	1	397	22	18	14	44	1.85
32970457--32970554	42	2.4	41	89	5	153	15	19	19	45	1.85
32976455--32976493	20	2.0	20	94	0	69	48	0	2	48	1.15
32976581--32976644	34	1.9	32	84	12	85	43	12	4	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32976614--32976651	14	2.7	15	88	8	53	42	15	2	39	1.61
32982991--32983031	21	1.9	22	85	5	57	43	4	19	31	1.72
32983321--32983345	12	2.1	12	100	0	50	36	8	0	56	1.29
32985247--32985676	212	2.0	212	97	0	815	30	15	18	35	1.92
32990111--32990135	3	8.3	3	100	0	50	32	36	0	32	1.58
32994471--32994531	32	1.9	31	90	3	95	37	4	19	37	1.74
32997991--32998033	20	2.2	20	91	0	68	60	9	9	20	1.55
32998569--32998705	54	2.5	54	90	2	204	24	33	18	22	1.97
33007963--33008260	75	4.0	75	79	4	298	36	22	20	20	1.95
33008018--33008146	40	3.4	38	74	15	122	40	20	17	20	1.92
33007989--33008106	35	3.2	35	71	15	103	36	22	22	19	1.95
33009135--33009188	28	1.9	28	96	0	99	25	27	11	35	1.90
33016801--33016957	50	3.1	49	80	3	179	42	18	10	28	1.83
33026702--33026753	18	2.7	19	85	5	61	55	3	1	38	1.29
33027143--33027226	39	2.2	37	81	12	98	42	1	2	53	1.21
33027195--33027243	25	2.0	25	84	8	64	42	4	0	53	1.20
33037196--33037256	25	2.4	26	78	15	65	40	3	4	50	1.40
33039094--33039161	27	2.5	27	78	0	73	20	27	17	33	1.95
33041438--33041497	25	2.4	25	97	0	111	28	10	21	40	1.85
33043276--33043553	68	4.1	68	95	0	488	45	8	5	41	1.57
33043542--33043583	16	2.6	16	92	0	66	42	7	0	50	1.30
33043557--33043618	23	2.7	23	82	2	72	48	1	0	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33045125--33045154	15	1.9	16	93	6	53	13	10	3	73	1.21
33045317--33045382	29	2.4	28	80	7	71	24	6	4	65	1.35
33046717--33046768	25	2.0	25	85	10	70	17	1	26	53	1.54
33046848--33046894	18	2.7	17	78	12	51	17	4	21	57	1.56
33051040--33051077	17	2.3	17	86	4	51	28	13	2	55	1.51
33054042--33054233	77	2.5	77	86	3	262	33	17	13	35	1.88
33054277--33054436	84	1.9	84	88	0	239	30	13	10	45	1.77
33054277--33054498	84	2.7	82	79	10	193	31	13	11	44	1.78
33066140--33066238	39	2.5	39	81	0	126	43	22	6	28	1.77
33070679--33070864	50	3.7	49	73	13	173	24	17	26	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218