genome.fa.s23.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  166  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50405780--50405843	25	2.6	25	78	9	60	50	3	3	43	1.33
50407088--50407135	21	2.3	21	79	10	55	70	0	6	22	1.09
50407214--50407248	10	3.5	10	84	0	52	65	2	0	31	1.07
50407214--50407267	22	2.6	20	82	5	63	64	7	0	27	1.20
50409361--50409649	44	6.6	44	73	8	189	27	20	22	30	1.98
50409915--50410911	46	21.7	46	86	4	1230	32	24	15	26	1.96
50409915--50410919	138	7.3	138	86	2	1383	32	25	16	26	1.96
50411790--50412108	97	3.1	105	81	10	368	49	8	15	27	1.72
50412373--50412443	18	3.9	18	82	15	85	0	16	1	81	0.76
50412373--50412443	30	2.4	30	83	9	83	0	16	1	81	0.76
50412373--50412443	23	3.0	24	80	17	85	0	16	1	81	0.76
50412371--50412442	15	5.0	15	78	13	71	0	18	1	80	0.78
50412373--50412423	5	10.8	5	83	8	63	0	17	0	82	0.67
50417199--50417228	10	3.0	10	90	0	51	63	0	0	36	0.95
50417199--50417242	20	2.2	20	87	0	61	61	6	0	31	1.22
50417676--50417727	9	6.0	8	78	12	50	69	1	1	26	1.10
50422143--50422234	39	2.3	39	78	9	98	39	22	22	15	1.92
50422259--50422580	41	7.9	41	75	5	276	17	24	23	34	1.96
50422260--50422563	82	3.7	82	85	1	378	17	23	23	35	1.95
50423103--50423140	15	2.5	15	86	0	58	21	0	42	36	1.53
50423939--50423980	21	2.0	21	95	0	75	45	0	7	47	1.30
50424287--50424326	17	2.3	18	87	8	57	47	12	5	35	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50424876--50424933	20	2.8	19	78	16	55	31	1	3	63	1.21
50424851--50424960	22	5.2	21	73	15	84	31	2	2	62	1.23
50424851--50424972	62	1.9	63	82	12	153	31	2	3	62	1.24
50425031--50425101	30	2.4	30	85	4	90	23	11	28	36	1.89
50425082--50425164	29	2.8	30	81	3	98	25	7	19	48	1.74
50433589--50434578	497	2.0	498	97	0	1892	30	25	13	31	1.93
50437139--50437166	2	14.0	2	100	0	56	0	50	0	50	1.00
50438115--50438157	18	2.4	18	80	7	52	65	2	2	30	1.18
50440268--50440379	61	2.0	54	86	13	154	38	7	12	41	1.70
50451931--50451962	16	2.1	15	94	5	55	9	0	0	90	0.45
50451932--50451961	10	2.9	10	95	5	51	10	0	0	90	0.47
50452347--50452385	14	2.8	14	84	0	51	33	5	0	61	1.18
50462826--50463026	41	4.9	40	81	5	224	35	25	19	18	1.95
50470684--50470725	16	2.8	16	89	7	61	54	0	4	40	1.21
50473447--50473490	21	2.1	21	86	0	61	29	18	22	29	1.97
50475916--50475940	13	1.9	13	100	0	50	36	0	0	64	0.94
50476033--50476067	12	3.0	11	91	8	52	77	0	22	0	0.78
50477229--50477314	21	4.0	23	72	13	74	18	22	23	36	1.95
50477554--50477599	24	1.9	24	86	0	65	43	2	19	34	1.63
50478293--50478336	18	2.4	18	81	7	54	40	0	4	54	1.21
50478853--50478952	38	2.6	37	73	16	96	29	4	5	62	1.35
50491647--50491737	44	2.1	44	89	4	139	46	10	13	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50493630--50493715	44	2.0	44	95	0	154	47	10	12	29	1.75
50498527--50498652	63	2.0	63	100	0	252	23	12	20	42	1.86
50510914--50510983	36	1.9	36	94	0	122	27	10	28	34	1.89
50515992--50516031	22	1.9	20	85	10	53	30	5	30	35	1.79
50521223--50521301	34	2.3	33	82	6	86	29	18	21	30	1.97
50521760--50521934	27	6.8	27	78	10	186	16	16	25	42	1.87
50521860--50521897	19	2.0	19	89	0	58	15	5	26	52	1.64
50521833--50521924	46	2.0	46	89	0	139	16	13	25	45	1.83
50521922--50521947	13	2.0	13	100	0	52	15	15	30	38	1.88
50532131--50532187	28	2.0	28	93	0	96	28	28	24	19	1.98
50532586--50532751	27	6.1	27	84	1	217	13	19	22	43	1.86
50533433--50533465	15	2.2	15	94	0	57	63	0	33	3	1.10
50544811--50544858	24	1.9	25	87	8	71	31	22	12	33	1.91
50547651--50547689	6	6.5	6	93	0	69	28	0	20	51	1.48
50550168--50550212	20	2.3	20	96	3	83	31	35	17	15	1.92
50554095--50554141	18	2.5	20	72	10	53	36	0	6	57	1.24
50557650--50557807	79	2.0	79	92	0	262	28	13	17	39	1.88
50558277--50558363	25	3.5	24	82	6	111	12	24	13	49	1.77
50558328--50558370	20	2.2	20	86	0	59	11	25	11	51	1.72
50558327--50558385	30	2.0	30	82	0	73	10	27	11	50	1.71
50559345--50559383	17	2.4	16	87	8	60	35	0	5	58	1.20
50559649--50559681	15	2.2	15	89	10	50	30	0	3	66	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50560448--50560530	32	2.5	34	81	9	93	34	16	7	40	1.76
50560630--50560660	6	5.2	6	100	0	62	0	67	0	32	0.91
50567288--50567321	13	2.7	13	90	4	52	2	14	5	76	1.09
50568365--50568497	27	4.9	27	84	0	140	42	18	19	19	1.90
50568359--50568497	54	2.6	54	84	0	179	41	18	19	20	1.90
50568672--50568773	26	3.9	26	77	0	105	15	18	25	40	1.90
50568901--50569002	30	3.5	28	78	10	96	22	25	23	28	1.99
50568908--50568997	30	3.0	30	81	0	108	22	26	22	28	1.99
50571421--50571536	43	2.7	42	83	10	153	26	28	19	25	1.99
50572434--50572490	28	2.0	28	86	6	80	40	5	0	54	1.23
50575777--50575880	21	5.0	21	80	9	106	13	21	19	46	1.84
50576017--50576064	21	2.3	20	82	3	60	45	4	25	25	1.71
50582574--50582614	18	2.3	19	80	16	52	65	12	0	21	1.25
50582696--50582754	30	2.0	30	89	0	91	59	13	3	23	1.50
50584779--50585056	27	10.3	27	81	5	294	17	17	19	45	1.86
50584780--50585056	81	3.4	80	86	5	353	16	17	19	45	1.86
50591481--50591520	22	1.9	20	85	10	53	45	7	5	42	1.54
50592156--50592212	28	2.0	28	89	0	87	26	24	24	24	2.00
50592545--50593076	27	19.9	27	80	6	462	17	17	20	44	1.86
50592544--50593085	81	6.8	81	80	5	571	16	16	21	45	1.86
50604362--50604445	24	3.5	24	67	6	71	10	8	52	28	1.65
50604507--50604577	36	2.0	36	85	0	97	19	5	54	19	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50604516--50604608	36	2.6	36	85	0	114	16	6	53	23	1.65
50604648--50604705	30	1.9	30	82	6	73	12	10	55	22	1.66
50604574--50604871	114	2.6	114	96	0	551	18	6	53	21	1.67
50604780--50604896	12	9.8	12	70	3	56	10	9	57	23	1.61
50604786--50604895	24	4.6	24	73	4	87	10	10	57	21	1.62
50604816--50604916	24	4.2	24	71	0	67	15	4	55	23	1.60
50604927--50604969	18	2.4	18	80	0	50	4	6	62	25	1.40
50604753--50605011	78	3.4	77	90	6	393	15	6	55	21	1.63
50604954--50605069	48	2.4	48	86	0	160	16	5	56	22	1.60
50605064--50605118	15	3.7	15	73	9	58	9	7	58	25	1.55
50605053--50605123	30	2.4	30	76	4	72	9	5	57	26	1.53
50605637--50605676	20	2.1	18	86	9	53	50	5	0	45	1.23
50607416--50607492	32	2.4	32	82	2	91	20	35	22	22	1.96
50608141--50608170	6	5.2	6	96	4	53	83	0	0	16	0.65
50608524--50608564	13	3.1	13	82	6	55	34	0	2	63	1.08
50610766--50610824	24	2.4	24	78	13	66	59	5	1	33	1.29
50611646--50611723	23	3.3	23	69	29	58	56	3	6	33	1.43
50612910--50612948	18	2.2	18	85	0	51	12	2	7	76	1.09
50613425--50613533	44	2.5	44	83	5	123	31	22	19	27	1.97
50615780--50615881	41	2.5	40	77	6	105	17	21	30	30	1.96
50616389--50616418	15	2.0	15	93	0	51	43	0	0	56	0.99
50616375--50616416	18	2.3	18	95	4	75	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50618240--50618320	42	1.9	43	84	2	110	29	29	12	28	1.93
50619460--50619497	12	3.3	12	89	7	53	0	21	0	78	0.74
50619478--50619518	9	4.3	10	81	12	50	7	9	0	82	0.83
50619457--50619486	6	5.2	6	96	4	53	0	30	0	70	0.88
50619503--50619556	27	2.0	27	92	3	92	22	1	5	70	1.18
50619512--50619566	27	2.1	27	89	3	85	21	0	10	67	1.21
50624701--50624796	23	4.1	23	70	21	67	57	3	5	34	1.37
50626164--50626195	8	4.2	8	84	15	50	53	9	0	37	1.34
50627081--50627149	7	9.4	7	75	12	50	62	1	2	33	1.19
50628254--50628313	27	2.2	28	87	3	86	45	1	0	53	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218