genome.fa.s23.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  181  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54387060--54387114	28	2.0	28	92	0	92	21	45	21	10	1.82
54389066--54389117	22	2.3	23	86	6	70	30	9	13	46	1.75
54389115--54389164	25	2.0	25	84	7	66	28	4	4	64	1.30
54390453--54390495	9	4.9	8	79	20	50	72	2	0	25	0.97
54400856--54400963	44	2.5	44	87	3	148	32	29	14	23	1.94
54401316--54401453	66	2.1	65	83	5	170	14	24	19	41	1.89
54404912--54404942	16	2.0	15	93	6	53	77	3	0	19	0.90
54405290--54405314	8	3.1	8	100	0	50	64	24	12	0	1.27
54410048--54410092	22	2.0	23	82	4	56	60	2	0	37	1.09
54421304--54421359	24	2.3	25	78	12	62	50	0	0	50	1.00
54425834--54425880	21	2.2	22	92	3	78	21	19	38	21	1.94
54430634--54430675	21	2.0	20	86	13	59	28	7	4	59	1.44
54430820--54431004	63	2.9	63	79	0	172	46	12	9	31	1.74
54437372--54437412	21	2.0	21	90	0	64	19	29	21	29	1.98
54441617--54441660	23	1.9	22	82	17	54	47	11	4	36	1.60
54445415--54445449	18	1.9	18	100	0	70	34	14	17	34	1.90
54458061--54458362	144	2.1	144	90	2	473	34	19	22	23	1.96
54460301--54460929	217	2.9	215	89	3	945	34	18	16	31	1.93
54460301--54460935	326	1.9	327	94	0	1112	33	18	15	31	1.93
54460301--54460935	109	5.8	109	90	1	963	33	18	15	31	1.93
54460986--54461016	16	1.9	16	93	0	53	54	6	16	22	1.64
54462059--54462091	14	2.3	15	89	5	50	87	3	0	9	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54464038--54464086	24	2.1	23	84	3	62	46	4	2	46	1.33
54466462--54466534	21	3.5	21	69	3	58	21	24	32	20	1.97
54466840--54467117	139	2.0	139	99	0	547	39	22	14	23	1.91
54470229--54470269	14	2.7	16	85	7	59	34	0	2	63	1.08
54471854--54472213	42	8.4	42	83	8	424	31	20	23	25	1.98
54472660--54472727	21	3.2	21	87	0	91	1	41	20	36	1.62
54473780--54473975	41	4.7	41	75	7	148	37	27	14	20	1.91
54476447--54476499	18	2.9	18	72	10	54	26	1	1	69	1.09
54479386--54479702	159	2.0	159	88	2	467	33	15	15	35	1.89
54481201--54481239	18	2.2	18	95	0	69	35	23	7	33	1.83
54481495--54481533	3	13.0	3	94	0	69	33	2	0	64	1.08
54481998--54482042	24	1.9	23	86	4	63	31	53	0	15	1.43
54489000--54489431	143	3.0	143	96	0	792	40	9	20	28	1.83
54493743--54493816	37	2.0	37	100	0	148	45	18	16	18	1.85
54494010--54494168	82	1.9	82	98	0	309	36	23	6	33	1.82
54505561--54505648	20	4.3	20	80	2	95	46	9	5	38	1.59
54505561--54505648	40	2.1	41	83	4	106	46	9	5	38	1.59
54505568--54505682	60	1.9	60	84	7	153	46	13	6	33	1.69
54506005--54506089	42	2.0	42	97	0	161	41	21	12	24	1.88
54513013--54513042	6	5.0	6	100	0	60	16	16	16	50	1.79
54514884--54514909	12	2.2	12	100	0	52	65	0	0	34	0.93
54515617--54515652	14	2.6	14	90	0	54	27	25	8	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54518632--54518680	21	2.3	21	92	0	80	34	2	4	59	1.28
54519121--54519164	21	2.0	22	82	4	54	59	4	4	31	1.38
54519329--54519363	3	11.7	3	93	0	61	68	2	0	28	1.04
54519789--54519841	19	2.7	19	73	2	52	35	3	7	52	1.48
54528890--54528931	6	7.0	6	83	0	57	16	16	19	47	1.83
54535239--54535278	16	2.5	16	95	0	71	35	35	5	25	1.78
54535999--54536071	9	7.7	9	79	11	74	24	5	26	43	1.75
54536005--54536052	20	2.4	20	92	0	78	25	4	27	43	1.72
54536017--54536070	20	2.8	20	91	5	85	22	7	27	42	1.80
54536407--54536470	26	2.6	24	77	18	60	60	4	4	29	1.37
54537979--54538013	19	1.9	17	88	11	52	22	11	0	65	1.24
54539847--54539899	17	2.8	18	80	13	63	62	0	0	37	0.96
54544334--54544629	43	6.9	43	80	3	319	26	24	20	28	1.99
54544334--54544629	86	3.5	85	84	2	353	26	24	20	28	1.99
54544922--54544978	21	2.7	21	91	0	96	0	42	19	38	1.51
54548642--54549376	366	2.0	366	100	0	1470	29	22	15	32	1.95
54550835--54551242	9	43.9	9	67	17	131	34	1	16	46	1.57
54550865--54551090	55	4.1	55	81	11	275	33	0	18	47	1.55
54550837--54551087	109	2.4	103	85	7	344	33	0	18	46	1.55
54552753--54552913	64	2.5	63	80	3	162	26	21	30	21	1.98
54552813--54552949	63	2.2	63	86	0	184	24	22	28	24	1.99
54555808--54555862	19	2.8	19	88	2	74	32	0	7	60	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54555833--54555880	19	2.6	19	83	9	55	29	2	2	66	1.14
54555938--54555985	18	2.7	18	83	6	53	29	4	0	66	1.10
54559928--54559968	21	2.0	21	90	0	64	19	29	21	29	1.98
54567333--54567362	13	2.2	13	94	5	51	0	20	3	76	0.92
54569536--54569585	25	2.0	25	88	7	75	22	32	18	28	1.97
54574035--54574084	25	2.0	25	84	7	66	22	32	16	30	1.95
54575731--54575776	17	2.8	16	74	6	56	32	15	8	43	1.77
54576567--54576643	33	2.3	32	80	10	84	14	41	25	18	1.88
54582354--54582380	11	2.5	11	100	0	54	25	0	0	74	0.83
54587308--54587415	11	10.4	11	69	26	58	59	0	3	37	1.15
54587340--54587404	30	2.1	30	86	13	89	61	0	3	35	1.12
54587282--54587431	81	1.9	81	88	5	232	62	0	2	34	1.15
54590738--54590784	19	2.5	19	76	13	51	31	4	2	61	1.27
54590806--54590863	30	1.9	30	82	6	73	24	3	1	70	1.12
54592399--54592433	2	17.5	2	100	0	70	48	0	0	51	1.00
54592573--54592602	13	2.4	12	94	5	51	36	0	0	63	0.95
54595030--54595222	41	4.9	40	82	6	223	23	20	26	29	1.99
54595031--54595222	78	2.4	79	82	2	242	23	20	26	29	1.99
54595598--54595639	14	2.9	15	82	6	52	16	0	47	35	1.47
54595569--54595639	14	4.9	15	71	11	51	19	0	45	35	1.51
54595775--54595814	21	1.9	21	89	0	62	20	0	37	42	1.52
54599693--54599785	43	2.2	43	84	3	116	31	9	27	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54602331--54602381	17	2.9	17	75	13	59	70	1	1	25	1.08
54603496--54603533	20	2.0	19	85	10	51	31	2	0	65	1.06
54606978--54607412	144	3.0	144	79	6	538	33	16	20	29	1.94
54610372--54610412	21	2.0	21	90	0	64	19	29	21	29	1.98
54613669--54613891	111	2.0	111	94	0	392	30	12	11	45	1.78
54617357--54617397	21	2.0	21	85	0	55	58	7	4	29	1.46
54622688--54622762	37	2.0	37	100	0	150	34	13	28	24	1.93
54633727--54633775	14	3.3	14	76	15	53	63	2	0	34	1.06
54633727--54633780	16	3.4	17	72	15	51	62	1	0	35	1.06
54633794--54633852	26	2.2	28	84	6	77	62	10	0	27	1.27
54633891--54634021	19	7.3	17	70	19	63	65	3	0	30	1.13
54633789--54634055	9	29.3	9	69	16	142	62	4	1	31	1.24
54633891--54634012	44	2.7	45	80	9	126	65	3	0	30	1.14
54633907--54634055	19	8.2	19	74	15	97	65	2	1	30	1.14
54633899--54634056	73	2.2	73	79	11	175	65	3	1	30	1.16
54635320--54635366	20	2.2	22	85	7	62	72	4	4	19	1.18
54636097--54636395	85	3.5	85	74	6	287	26	19	22	31	1.97
54636158--54636743	44	13.5	44	72	9	220	26	19	21	32	1.97
54636204--54636568	129	2.8	128	80	6	403	27	18	20	33	1.96
54636106--54636439	173	1.9	173	87	0	488	26	19	21	32	1.97
54636377--54636743	174	2.1	174	89	0	581	26	19	21	32	1.97
54636498--54636745	130	1.9	129	87	5	367	25	20	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54647561--54647623	31	2.0	31	96	0	117	47	19	9	23	1.78
54648817--54648864	17	2.9	17	84	3	62	54	4	8	33	1.50
54649003--54649053	3	16.7	3	83	4	66	62	1	1	33	1.17
54649673--54649719	20	2.2	22	85	7	62	72	4	4	19	1.18
54650253--54650542	9	31.4	9	67	18	125	62	3	1	32	1.22
54650279--54650542	10	26.4	10	63	20	72	63	3	0	32	1.18
54650375--54650419	17	2.6	17	82	6	56	68	2	2	26	1.12
54650390--54650504	44	2.7	44	76	14	114	65	2	0	31	1.12
54650391--54650542	19	8.2	19	71	19	83	65	2	0	30	1.11
54650353--54650536	86	2.2	86	78	10	191	63	3	1	32	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218