genome.fa.s23.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  185  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55312474--55312710	120	2.0	120	95	0	429	51	3	1	42	1.29
55312596--55312917	108	3.1	107	90	5	482	52	4	1	41	1.30
55312660--55312927	99	2.6	98	87	9	337	51	5	1	41	1.33
55312474--55312756	120	2.3	118	89	5	350	52	3	1	42	1.29
55314366--55314464	50	2.0	50	91	0	162	35	11	12	41	1.78
55315951--55316128	38	4.9	36	69	15	116	43	2	5	49	1.37
55316111--55316144	17	2.0	17	100	0	68	41	0	0	58	0.98
55315841--55316155	108	3.0	106	91	5	502	43	1	4	50	1.33
55317301--55317338	4	9.5	4	83	11	51	73	0	5	21	1.02
55317456--55317490	12	2.9	12	91	0	61	45	0	11	42	1.40
55317588--55317663	37	2.1	35	82	4	89	47	1	13	38	1.51
55317799--55317850	26	2.0	27	84	3	70	63	5	1	28	1.28
55318502--55318535	10	3.3	10	88	8	50	88	5	2	2	0.70
55318997--55319034	16	2.4	16	95	0	67	26	34	2	36	1.71
55325252--55325302	25	2.0	24	88	7	75	39	0	1	58	1.09
55329335--55329393	29	2.0	29	83	0	73	64	5	0	30	1.15
55329998--55330074	14	5.0	15	71	20	52	42	14	9	33	1.77
55330014--55330053	20	2.0	20	90	0	62	50	12	10	27	1.72
55330002--55330068	34	1.9	35	90	3	109	46	13	8	31	1.74
55330966--55331002	20	1.9	18	89	10	56	37	10	10	40	1.75
55335246--55335314	2	34.0	2	94	2	120	49	0	47	2	1.16
55341947--55342031	43	2.0	43	90	0	134	34	14	23	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55353972--55354096	64	2.0	64	98	0	241	22	12	29	35	1.91
55354662--55354727	13	4.6	13	73	23	53	37	1	1	59	1.16
55354661--55354726	14	4.5	14	71	17	53	37	1	1	59	1.16
55354662--55354702	13	3.2	12	89	10	55	39	0	0	60	0.96
55355694--55355752	22	2.7	22	69	10	57	40	13	1	44	1.54
55356047--55356091	22	2.0	22	100	0	90	40	4	17	37	1.70
55360817--55360904	20	4.0	21	74	17	72	64	5	5	23	1.37
55361782--55361806	12	2.1	12	100	0	50	24	8	0	68	1.16
55362438--55362473	16	2.2	17	90	5	56	36	11	0	52	1.37
55362465--55362537	23	3.3	23	66	22	57	39	8	4	47	1.52
55362468--55362613	47	3.2	43	71	18	107	39	8	2	49	1.47
55362527--55362625	53	1.9	50	83	6	126	39	8	1	51	1.38
55362984--55363028	21	2.2	20	84	11	56	28	11	2	57	1.45
55363056--55363387	107	3.1	107	85	4	420	30	16	18	35	1.93
55366871--55367127	33	7.8	33	78	1	237	28	3	43	23	1.71
55366844--55367133	66	4.4	65	78	4	269	28	3	44	23	1.70
55366871--55367127	99	2.6	99	77	1	273	28	3	43	23	1.71
55371983--55372025	22	2.0	22	90	0	68	9	13	27	48	1.73
55372115--55372409	42	7.0	42	82	4	292	32	20	20	27	1.97
55372406--55372443	18	2.1	18	95	0	67	28	28	7	34	1.85
55372859--55372915	21	2.7	21	100	0	114	0	42	22	35	1.54
55372859--55372948	42	2.1	42	83	4	110	2	40	22	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55378404--55378596	9	22.8	9	75	12	149	31	3	18	47	1.64
55378397--55378553	25	6.3	25	78	5	131	31	3	19	46	1.65
55378397--55378562	16	10.4	16	71	17	98	31	3	19	46	1.65
55378402--55378579	50	3.7	50	80	9	160	31	2	19	46	1.65
55378465--55378579	41	2.8	40	88	5	133	31	1	19	47	1.59
55378403--55378596	25	7.7	24	80	6	99	31	3	18	46	1.64
55378700--55379054	87	4.0	86	79	12	402	48	4	4	42	1.43
55378767--55378827	17	3.5	18	69	22	58	52	4	0	42	1.23
55378915--55378947	15	2.2	15	94	0	57	54	3	3	39	1.31
55378962--55379106	52	3.0	46	90	9	154	46	4	5	44	1.46
55378962--55379023	21	3.0	21	70	23	51	48	4	4	41	1.46
55378981--55379106	52	2.4	52	100	0	252	46	3	4	45	1.43
55379023--55379104	24	3.2	24	67	29	71	43	3	6	46	1.46
55378804--55379241	229	1.9	229	98	0	849	48	4	5	41	1.47
55379144--55379176	15	2.2	15	94	0	57	54	3	3	39	1.31
55380205--55380581	195	2.0	188	90	7	606	34	12	33	19	1.90
55380565--55380618	24	2.2	24	90	6	83	35	1	42	20	1.63
55381158--55381206	22	2.2	22	88	0	80	34	28	4	32	1.76
55381278--55381400	53	2.3	54	80	13	157	46	32	4	17	1.66
55381843--55382235	189	2.1	189	88	3	578	28	20	20	30	1.98
55386331--55386420	43	2.1	44	87	6	130	32	22	20	25	1.98
55386394--55386448	28	2.0	28	88	0	83	34	23	16	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55386356--55386490	71	1.9	71	85	8	186	33	22	20	23	1.97
55386427--55386540	42	2.7	42	81	6	124	30	21	24	23	1.99
55386967--55387038	21	3.4	21	86	0	90	4	44	16	34	1.67
55388063--55388322	25	10.4	25	78	7	235	37	1	16	44	1.57
55388127--55388596	9	54.7	9	70	18	222	39	0	15	44	1.53
55388127--55388276	34	4.5	34	76	15	161	35	2	18	44	1.61
55388071--55388366	98	3.0	98	92	4	461	37	1	16	44	1.57
55388194--55388345	34	4.3	35	73	16	118	38	1	16	43	1.56
55388329--55388361	16	2.1	16	100	0	66	30	0	24	45	1.53
55388296--55388507	50	3.9	50	74	20	203	42	0	15	41	1.50
55388072--55388596	25	20.9	25	67	21	153	38	0	15	44	1.53
55388225--55388596	34	11.2	33	69	19	113	40	0	15	44	1.50
55388291--55388538	115	2.2	115	91	3	394	41	0	14	43	1.49
55388381--55388618	81	2.9	78	83	10	248	39	0	15	44	1.52
55388525--55388557	16	2.1	16	100	0	66	30	0	24	45	1.53
55388407--55388596	43	4.4	43	73	13	156	41	0	15	43	1.46
55388583--55388627	22	2.1	21	91	4	72	40	2	13	44	1.56
55391259--55391314	16	3.5	16	80	7	69	23	7	3	66	1.33
55393603--55393727	63	1.9	66	82	6	157	54	4	6	34	1.47
55394505--55394537	15	2.3	15	89	5	50	36	0	6	57	1.23
55394540--55394586	20	2.3	20	85	7	60	65	4	0	29	1.11
55395309--55395390	38	2.1	39	95	2	148	62	0	3	34	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55395310--55395374	11	5.3	12	70	15	53	58	0	4	36	1.19
55401928--55401977	13	3.8	13	81	0	64	30	4	24	42	1.73
55403430--55403489	24	2.6	23	76	15	61	35	1	11	51	1.48
55405389--55405417	13	2.1	14	93	6	51	34	41	6	17	1.76
55407092--55407159	29	2.3	29	85	10	84	48	14	14	22	1.80
55409487--55409518	3	10.7	3	100	0	64	34	0	0	65	0.93
55409927--55409965	20	2.0	20	94	0	69	7	5	10	76	1.13
55411012--55411097	42	2.0	42	95	0	154	23	30	15	31	1.95
55416002--55416041	20	2.0	20	85	0	53	50	10	15	25	1.74
55417422--55417474	16	3.3	16	94	0	88	37	7	32	22	1.82
55417709--55417906	61	3.3	61	75	12	228	51	3	1	43	1.28
55417767--55417955	59	3.2	59	75	11	222	53	1	1	43	1.17
55417709--55417956	120	2.1	120	98	0	478	52	2	1	43	1.23
55417882--55417951	15	4.9	15	73	18	60	57	0	0	42	0.99
55420149--55420201	23	2.3	23	93	0	88	32	24	18	24	1.97
55420434--55420470	19	1.9	19	89	10	58	43	16	0	40	1.48
55429441--55429490	15	3.3	15	85	0	64	38	18	32	12	1.87
55432891--55432947	15	3.7	15	76	19	55	45	1	10	42	1.49
55432888--55432958	30	2.3	29	77	17	81	43	1	11	43	1.49
55434671--55434742	30	2.4	29	84	9	83	54	0	1	44	1.08
55435158--55435206	20	2.5	20	83	6	64	51	6	6	36	1.52
55437827--55438178	43	8.3	43	88	1	467	27	29	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55437827--55438161	85	3.9	84	87	2	456	27	29	17	25	1.98
55437827--55438178	128	2.8	129	87	1	476	27	29	17	25	1.97
55441085--55441198	57	2.0	57	87	3	167	27	22	14	35	1.94
55442728--55442764	18	2.0	19	89	5	58	37	43	0	18	1.51
55442990--55443032	20	2.2	20	87	8	61	48	20	0	30	1.50
55443791--55443950	41	3.9	41	90	1	250	28	27	23	20	1.99
55443993--55444121	40	3.3	39	78	6	143	22	20	20	35	1.96
55448377--55448460	42	2.0	42	97	2	161	33	5	2	58	1.35
55450523--55450598	37	2.1	37	97	0	143	32	2	43	21	1.66
55451684--55451743	28	2.1	28	100	0	120	55	0	6	38	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218