genome.fa.s23.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  202  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59828910--59829359	194	2.3	193	85	2	580	40	18	13	27	1.88
59839568--59839609	22	2.0	21	90	4	66	26	7	0	66	1.17
59840203--59840231	12	2.3	13	94	5	51	75	0	0	24	0.80
59845873--59845915	20	2.2	19	83	4	50	46	0	9	44	1.35
59846882--59846911	14	2.1	14	100	0	60	23	6	20	50	1.71
59847378--59847424	25	1.9	25	91	4	78	42	12	25	19	1.86
59862647--59862695	24	2.1	23	85	11	64	34	14	14	36	1.86
59863821--59863875	23	2.4	23	82	11	60	49	3	0	47	1.19
59867799--59867841	18	2.3	19	80	15	54	62	2	0	34	1.08
59869077--59869116	19	2.1	19	95	0	71	30	22	10	37	1.87
59874772--59874924	43	3.6	43	75	8	123	30	26	15	27	1.96
59877459--59877512	27	2.0	28	88	3	83	40	5	18	35	1.74
59886215--59886694	43	11.2	43	87	2	653	31	27	16	24	1.96
59886860--59886889	13	2.4	13	94	5	53	53	0	0	46	1.00
59886860--59886889	6	4.8	6	92	8	51	53	0	0	46	1.00
59890011--59890868	106	8.1	106	83	8	1000	32	12	12	42	1.80
59889928--59890910	215	4.5	216	86	6	1348	32	11	13	42	1.80
59890720--59891081	187	2.0	184	94	2	636	30	12	11	45	1.78
59891593--59891702	14	7.7	14	68	18	57	37	31	0	30	1.64
59891648--59891703	22	2.5	22	74	5	60	39	32	0	28	1.57
59891883--59891942	15	3.9	15	68	12	50	33	45	0	21	1.52
59891883--59891942	23	2.6	23	91	0	102	33	45	0	21	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59891883--59891935	8	6.9	8	80	6	65	32	47	0	20	1.51
59891884--59891946	8	8.2	8	78	5	51	36	42	0	20	1.52
59892176--59892288	44	2.6	44	77	12	108	35	38	0	24	1.62
59892278--59892313	15	2.5	15	95	4	65	33	41	0	25	1.55
59892499--59892573	15	4.9	15	70	14	55	32	44	1	22	1.62
59892516--59892566	8	6.6	8	80	6	61	31	49	0	19	1.49
59892516--59892573	23	2.5	23	91	0	98	32	46	0	20	1.51
59892520--59892577	8	7.6	8	78	5	50	36	41	0	22	1.54
59892594--59892636	15	2.9	15	89	3	61	37	39	0	23	1.55
59891678--59893016	631	2.1	616	95	2	2378	41	28	2	27	1.68
59892915--59892943	15	1.9	15	100	0	58	37	41	0	20	1.53
59892909--59892945	15	2.6	14	87	8	56	35	43	0	21	1.53
59893290--59893448	41	3.9	40	93	4	246	29	32	18	19	1.95
59899237--59899271	3	11.7	3	100	0	70	31	0	0	68	0.90
59899733--59899777	14	3.2	14	80	0	54	53	8	4	33	1.52
59899749--59899833	43	2.0	41	82	11	100	50	4	8	36	1.53
59899907--59899967	22	2.9	22	87	4	81	54	0	8	37	1.31
59899917--59899976	10	5.9	10	76	16	52	58	0	5	36	1.20
59899916--59899967	20	2.5	21	87	6	70	57	0	5	36	1.23
59899969--59900029	26	2.4	25	77	20	65	65	4	3	26	1.28
59900300--59900436	40	3.5	40	82	1	141	40	21	18	19	1.92
59901214--59901258	14	3.0	15	80	9	56	22	0	33	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59901926--59901974	14	3.4	14	83	5	71	22	0	36	40	1.54
59901929--59901967	7	5.4	7	81	6	51	25	0	35	38	1.56
59901921--59901985	29	2.3	30	76	10	73	24	0	33	41	1.55
59901983--59902029	17	2.8	17	96	3	87	19	0	48	31	1.49
59902616--59902665	24	2.1	25	85	7	68	58	8	6	28	1.51
59907114--59907259	43	3.4	42	80	7	159	22	15	28	32	1.95
59907135--59907284	43	3.5	42	81	7	160	24	15	31	29	1.95
59908070--59908110	5	7.6	5	94	5	55	82	0	0	17	0.66
59908069--59908110	6	7.5	6	94	5	63	83	0	0	16	0.65
59912419--59912488	35	2.0	35	94	0	122	27	18	24	30	1.98
59913071--59913150	25	2.9	27	76	10	83	60	0	3	36	1.15
59915801--59915849	8	5.9	8	83	4	62	71	2	4	22	1.13
59915803--59915849	17	2.8	16	81	12	58	72	2	4	21	1.12
59915801--59915860	8	6.8	9	79	11	54	70	1	3	25	1.12
59915844--59915927	29	2.8	30	75	12	91	59	1	4	34	1.26
59915779--59915923	10	15.4	9	68	16	57	61	1	4	33	1.24
59916071--59916123	27	2.0	26	85	10	72	43	3	0	52	1.19
59916429--59916515	10	8.8	10	67	16	56	65	2	2	29	1.17
59916429--59916470	22	1.9	22	90	0	66	71	2	2	23	1.10
59918667--59918708	19	2.3	19	87	4	59	76	7	2	14	1.10
59920141--59921655	132	11.5	132	92	0	2323	28	24	19	27	1.98
59920226--59921319	44	24.9	43	61	14	124	28	24	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59923002--59923044	7	6.1	7	86	10	61	13	16	2	67	1.33
59927709--59927750	19	2.3	19	87	4	59	76	7	2	14	1.10
59930199--59930270	3	24.0	3	100	0	144	66	0	0	33	0.92
59933270--59933314	17	2.6	18	76	16	51	44	0	20	35	1.51
59933798--59933890	3	30.3	3	74	14	75	27	2	6	63	1.30
59933956--59934012	24	2.3	24	78	6	60	38	5	3	52	1.41
59934140--59934179	15	2.7	15	80	0	53	27	0	2	70	1.01
59934073--59934181	13	8.1	13	69	11	60	29	5	0	64	1.22
59939742--59939786	24	1.9	23	81	4	54	37	11	4	46	1.60
59948260--59948437	42	4.4	42	78	13	212	33	28	15	22	1.94
59948346--59948470	33	3.5	33	75	17	124	35	28	16	20	1.94
59948301--59948475	75	2.3	75	93	0	287	32	28	17	22	1.96
59954686--59954736	23	2.3	23	87	12	72	41	0	0	58	0.98
59968431--59968470	19	2.1	19	86	9	55	60	10	0	30	1.30
59973207--59973268	19	3.1	19	70	20	63	17	17	17	46	1.84
59973191--59973268	41	1.9	41	94	0	138	17	16	20	44	1.86
59973623--59973758	40	3.4	39	79	4	137	35	22	22	20	1.96
59973795--59974066	41	6.7	42	83	5	303	23	20	23	31	1.98
59973795--59974032	78	3.0	80	85	5	291	24	20	22	32	1.98
59973794--59974060	119	2.2	119	82	6	322	24	19	23	32	1.98
59974163--59974213	26	2.0	26	84	0	66	60	3	9	25	1.45
59974474--59974507	14	2.3	15	90	5	52	35	0	29	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59974538--59974564	14	1.9	14	100	0	54	22	0	48	29	1.51
59974739--59974791	21	2.5	22	84	6	81	20	1	39	37	1.64
59975182--59975434	43	5.9	43	90	0	398	17	17	34	30	1.93
59975527--59975569	22	2.0	22	90	0	68	44	27	18	9	1.80
59989371--59989415	24	1.9	23	81	4	54	37	11	4	46	1.60
59990792--59990816	4	6.2	4	100	0	50	72	0	0	28	0.86
59995638--59995704	34	1.9	35	87	3	100	46	13	8	31	1.74
59996663--59996693	16	1.9	16	93	0	53	58	0	6	35	1.24
59996992--59997021	12	2.5	12	94	0	51	0	13	3	83	0.77
60002485--60002575	13	6.6	13	68	20	51	41	12	2	43	1.54
60002486--60002529	17	2.6	17	96	0	79	45	15	0	38	1.47
60002470--60002584	53	2.1	53	88	6	167	40	10	3	45	1.55
60002747--60003094	157	2.2	157	96	2	646	43	15	4	36	1.67
60003059--60003431	9	43.1	9	70	16	220	45	19	2	32	1.64
60003059--60003426	25	14.6	25	73	14	207	45	19	2	32	1.64
60003082--60003427	34	10.4	34	70	19	185	45	19	2	32	1.65
60003059--60003369	16	19.5	16	67	20	138	46	19	2	32	1.62
60003132--60003400	103	2.6	103	94	2	450	44	18	2	33	1.64
60008947--60009017	21	3.4	21	92	0	115	30	19	46	2	1.64
60009314--60009455	42	3.3	43	89	3	207	24	19	23	33	1.97
60018472--60018515	20	2.2	20	84	15	56	34	4	2	59	1.30
60023859--60023908	20	2.5	20	76	0	55	42	16	0	42	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60024151--60024215	33	2.0	33	100	0	130	23	9	9	58	1.58
60029203--60029392	97	2.0	97	83	8	244	26	16	8	47	1.75
60030277--60030764	46	10.7	46	85	4	659	25	15	25	33	1.95
60030277--60030764	225	2.1	225	88	2	717	25	15	25	33	1.95
60036730--60036770	21	1.9	21	85	5	55	7	17	9	65	1.44
60037211--60037262	23	2.3	23	81	15	72	36	0	0	63	0.95
60037211--60037262	22	2.4	22	84	12	72	36	0	0	63	0.95
60037224--60037271	23	2.1	23	84	7	62	39	2	2	56	1.23
60038098--60038162	28	2.2	28	76	12	69	36	1	3	58	1.23
60040884--60040956	33	2.2	33	92	0	119	50	8	2	38	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218