genome.fa.s23.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  28  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9016151--9016320	66	2.6	66	84	3	191	12	27	18	41	1.87
9021690--9021990	9	36.0	9	64	19	107	30	2	19	47	1.62
9021712--9021990	16	17.8	16	66	16	86	30	2	18	48	1.61
9021750--9021901	25	6.1	25	76	6	121	34	1	19	44	1.62
9021717--9021990	41	7.0	41	76	13	236	31	2	18	47	1.61
9021748--9021896	75	2.0	74	92	5	246	34	2	18	45	1.61
9021770--9021977	25	8.3	25	72	5	150	30	2	19	47	1.62
9021993--9022270	121	2.3	121	95	1	495	45	6	9	38	1.61
9022299--9022387	18	4.8	18	79	14	101	41	0	12	46	1.41
9022301--9022405	31	3.5	31	71	21	100	42	0	13	43	1.43
9022432--9022505	27	2.7	27	85	4	96	43	4	9	43	1.56
9022344--9022478	40	3.6	38	78	8	116	40	3	12	42	1.60
9026098--9026198	7	14.0	7	68	17	55	36	42	0	20	1.53
9026099--9026198	14	6.9	15	71	14	66	36	43	0	21	1.53
9026099--9026178	22	3.6	22	75	9	83	36	43	0	20	1.52
9026862--9026912	8	5.9	8	82	15	57	15	1	1	80	0.89
9026868--9026920	27	2.0	27	88	7	81	13	3	1	81	0.92
9026876--9026918	19	2.3	19	91	0	68	13	2	2	81	0.89
9026865--9026919	11	4.7	12	74	17	53	14	1	1	81	0.85
9027301--9027341	21	2.0	20	85	4	55	39	41	0	19	1.52
9028252--9028490	41	5.8	41	86	0	316	32	26	21	19	1.97
9028833--9028871	19	2.1	19	85	9	53	53	0	2	43	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9029984--9030008	13	1.9	13	100	0	50	88	0	0	12	0.53
9034346--9034388	20	2.3	18	81	14	52	41	0	4	53	1.21
9038193--9038236	19	2.3	19	88	0	61	56	27	2	13	1.49
9040810--9041208	90	4.4	90	90	5	647	50	10	9	30	1.67
9040805--9041195	187	2.1	186	93	3	664	50	9	9	30	1.67
9041513--9041564	17	3.1	17	94	0	86	38	7	1	51	1.42
9041951--9042012	19	3.2	18	79	20	72	51	14	12	20	1.75
9041950--9042010	20	3.1	20	78	21	74	52	14	13	19	1.74
9042918--9043008	44	2.1	44	91	0	146	52	7	7	31	1.58
9048899--9048941	16	2.6	17	85	7	54	58	2	4	34	1.32
9050546--9050585	20	2.0	20	90	0	62	50	12	10	27	1.72
9052021--9052160	40	3.5	40	74	6	133	31	24	17	27	1.97
9053121--9053155	3	11.7	3	100	0	70	65	0	0	34	0.93
9054440--9054493	26	2.1	26	96	0	99	29	20	24	25	1.99
9061617--9061651	14	2.5	14	90	0	52	25	5	5	62	1.40
9063319--9063400	40	2.0	40	100	0	164	15	24	26	32	1.95
9064209--9064349	60	2.3	60	85	9	198	24	17	14	43	1.86
9064805--9064883	31	2.5	31	85	0	104	49	12	11	26	1.75
9065726--9065752	6	4.5	6	100	0	54	85	0	0	14	0.61
9068241--9068386	21	7.7	20	74	16	125	46	0	52	0	1.10
9068248--9068428	18	10.2	17	74	17	106	48	0	50	0	1.09
9068286--9068439	3	51.3	3	75	5	105	45	0	53	0	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9068263--9068339	33	2.3	33	88	4	111	51	0	48	0	1.00
9068242--9068439	15	13.6	15	75	11	126	47	0	51	0	1.08
9068239--9068439	24	8.4	24	78	8	169	47	0	51	0	1.08
9072255--9072436	91	1.9	94	82	10	230	33	10	19	36	1.86
9073001--9073056	29	1.9	29	85	7	78	62	5	8	23	1.45
9073222--9073285	27	2.3	28	86	2	85	21	21	3	53	1.60
9073845--9073908	28	2.2	29	83	2	76	48	3	25	23	1.65
9078962--9078999	20	1.9	20	88	0	58	28	0	5	65	1.14
9089399--9089427	15	1.9	15	100	0	58	17	13	13	55	1.70
9099883--9099922	20	2.0	20	100	0	80	40	15	15	30	1.87
9102868--9102924	14	4.4	12	78	12	51	77	1	3	17	1.00
9102867--9102924	22	2.6	22	84	10	66	77	1	3	17	0.99
9108957--9109267	43	7.3	43	80	2	313	27	31	15	25	1.96
9108963--9109178	85	2.5	86	84	2	265	26	33	15	24	1.95
9109544--9109634	43	2.1	43	85	2	121	42	9	10	36	1.73
9111297--9111323	13	2.1	13	100	0	54	18	22	37	22	1.95
9111684--9111771	25	3.2	25	64	27	61	46	10	2	40	1.50
9111675--9111776	33	3.3	33	65	29	98	47	8	1	42	1.46
9111657--9111774	58	2.0	58	98	0	227	43	8	3	44	1.51
9111672--9111761	28	3.1	28	64	17	76	45	8	2	43	1.47
9111672--9111763	30	3.1	30	67	17	93	45	8	2	43	1.47
9114147--9114380	83	2.8	81	81	5	279	29	15	14	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9114515--9114542	14	2.0	14	100	0	56	50	0	0	50	1.00
9114612--9114658	17	2.8	17	83	0	58	51	10	0	38	1.37
9114992--9115032	21	2.0	21	90	0	64	31	46	0	21	1.52
9115002--9115032	14	2.2	14	94	0	53	32	48	0	19	1.49
9115003--9115064	21	3.0	21	83	2	63	35	45	0	19	1.51
9115051--9115088	14	2.7	15	88	12	62	42	31	0	26	1.56
9115335--9115462	7	18.0	7	66	9	53	42	35	0	21	1.53
9115336--9115475	14	9.9	14	71	6	93	45	33	0	20	1.52
9115656--9115900	41	6.0	41	89	5	379	28	28	23	19	1.98
9115997--9116072	40	1.9	40	83	0	98	22	25	21	31	1.98
9119521--9119571	5	9.8	5	89	6	75	39	3	54	1	1.30
9126760--9126894	67	2.0	67	97	0	252	31	14	22	31	1.94
9127187--9127213	3	9.0	3	100	0	54	66	0	0	33	0.92
9134922--9134957	15	2.5	14	86	8	54	44	8	0	47	1.33
9140217--9140262	21	2.1	23	88	8	69	32	2	32	32	1.70
9142911--9142946	15	2.5	14	86	8	54	44	8	0	47	1.33
9145836--9145879	13	3.4	13	93	6	72	38	31	0	29	1.58
9146521--9146618	48	2.0	48	100	0	196	16	12	6	65	1.45
9155208--9155234	9	3.0	9	100	0	54	11	22	0	66	1.22
9155339--9155382	21	2.1	21	87	8	63	45	11	9	34	1.72
9157938--9158037	52	2.0	49	84	5	128	51	11	8	30	1.66
9158073--9158098	13	2.0	13	100	0	52	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9163543--9163594	26	2.0	25	85	3	68	59	19	0	21	1.38
9164431--9164481	22	2.3	23	83	10	61	70	7	0	21	1.12
9164431--9164481	23	2.2	23	82	6	59	70	7	0	21	1.12
9165953--9166050	33	2.9	33	84	7	108	36	22	10	30	1.87
9166265--9166420	41	3.8	41	89	6	235	28	22	20	28	1.98
9173592--9173689	33	2.9	33	84	7	108	36	22	10	30	1.87
9173904--9174059	41	3.8	41	89	6	235	28	22	20	28	1.98
9177060--9177090	3	10.7	3	93	6	55	0	35	0	64	0.94
9177060--9177115	20	2.8	19	84	12	69	1	33	0	64	1.04
9177307--9177351	9	4.6	10	81	13	58	17	0	11	71	1.14
9177310--9177347	19	2.0	20	89	5	60	18	0	7	73	1.06
9177833--9177900	10	7.0	9	78	15	57	70	1	1	26	1.04
9177832--9177895	29	2.2	28	83	10	76	70	1	1	26	1.05
9177845--9177895	9	5.4	10	80	17	56	70	1	1	25	1.08
9177844--9177900	19	2.9	18	82	10	60	70	1	1	26	1.07
9178091--9178128	18	2.1	18	85	9	51	65	2	0	31	1.06
9178381--9178420	5	8.0	5	88	0	53	17	0	42	40	1.49
9186602--9186645	19	2.3	19	88	0	61	29	11	2	56	1.46
9191838--9191910	27	2.7	27	86	0	92	31	1	1	65	1.09
9194692--9194729	19	2.0	19	89	0	58	47	13	7	31	1.71
9202063--9202403	169	2.0	169	90	0	529	38	17	11	32	1.85
9203836--9203869	2	17.0	2	100	0	68	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9212969--9213008	11	3.5	11	86	6	62	15	0	7	77	0.98
9212959--9213001	12	3.6	12	84	9	61	9	2	9	79	1.03
9212959--9213013	23	2.3	24	93	3	94	12	1	7	78	1.04
9214236--9214383	68	2.2	68	95	1	262	42	1	20	35	1.61
9215706--9215775	10	6.2	10	71	22	50	74	5	20	0	1.02
9216434--9216488	24	2.2	26	78	12	62	36	0	18	45	1.49
9219631--9219790	25	6.6	25	82	9	167	38	18	23	20	1.93
9223443--9223481	3	13.0	3	100	0	78	33	33	0	33	1.58
9230314--9230371	15	3.6	15	72	17	53	50	1	1	46	1.22
9230728--9230800	33	2.2	34	80	9	89	50	17	6	24	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218