genome.fa.s23.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  121  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36353453--36353902	27	17.3	27	73	11	241	39	20	18	22	1.93
36353453--36353844	54	7.6	54	71	12	277	38	20	19	22	1.94
36353475--36353675	102	2.0	103	87	1	296	37	21	19	21	1.95
36353643--36353687	22	2.0	22	100	0	90	26	26	22	24	2.00
36353565--36353900	81	4.3	80	74	10	275	39	20	18	21	1.92
36354054--36354104	26	2.0	26	92	0	84	19	21	23	35	1.96
36354207--36354323	28	4.2	28	89	0	180	23	22	22	32	1.98
36361624--36361648	12	2.1	12	100	0	50	36	0	24	40	1.55
36367386--36367606	27	8.2	27	81	6	241	19	16	22	41	1.90
36368217--36368259	12	3.6	12	75	12	52	23	44	0	32	1.54
36368767--36368811	21	2.1	22	83	4	56	53	0	6	40	1.27
36372145--36372183	19	2.1	19	85	0	51	51	5	12	30	1.62
36373467--36373504	18	2.1	18	90	0	58	42	21	15	21	1.89
36373816--36373882	9	7.4	9	87	0	89	25	7	22	44	1.78
36379944--36379980	19	1.9	19	94	0	65	21	29	2	45	1.65
36379941--36379987	19	2.5	19	80	13	60	21	29	2	46	1.63
36383648--36383707	25	2.4	25	100	0	120	21	15	21	41	1.89
36384342--36384379	20	1.9	20	89	10	60	55	5	21	18	1.62
36402082--36402163	39	2.1	39	97	0	155	35	13	24	26	1.92
36404256--36404362	33	3.3	34	65	22	95	35	14	21	28	1.93
36404251--36404378	63	2.0	63	100	0	256	37	15	20	26	1.92
36405656--36405682	5	5.4	5	100	0	54	40	18	18	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36413811--36413869	29	2.0	29	90	0	91	50	0	11	37	1.39
36413875--36413911	9	4.1	9	89	0	56	29	8	13	48	1.71
36419883--36420129	50	4.8	50	79	7	223	28	21	27	22	1.99
36423383--36423419	17	2.2	17	90	0	56	24	10	16	48	1.77
36431828--36431969	47	2.9	49	78	12	164	35	22	16	24	1.95
36439356--36439582	75	3.0	74	82	5	242	35	19	21	23	1.96
36439398--36439639	75	3.2	75	80	5	206	34	16	22	26	1.95
36441176--36441282	50	2.1	49	83	6	135	22	31	21	24	1.98
36448744--36448873	49	2.6	47	79	12	129	22	28	21	27	1.99
36448744--36448936	50	3.9	50	77	3	174	21	29	22	26	1.99
36458471--36458615	27	5.4	27	85	1	202	42	20	17	20	1.89
36458468--36458615	53	2.8	54	87	2	210	43	19	16	20	1.88
36458486--36458648	27	6.1	27	83	7	118	39	19	17	23	1.92
36461300--36461581	75	3.8	74	81	5	237	34	19	23	23	1.97
36461461--36461574	35	3.0	39	69	25	107	29	19	26	24	1.98
36463546--36463575	15	2.0	15	93	0	51	23	46	10	20	1.80
36473326--36473423	50	1.9	51	83	6	128	28	21	15	34	1.94
36473480--36473563	26	3.3	25	71	18	66	45	11	10	32	1.75
36479044--36479088	17	2.7	17	89	3	65	28	33	17	20	1.95
36481633--36481678	24	1.9	24	95	0	83	26	8	4	60	1.44
36490982--36491401	43	9.7	42	84	4	464	28	28	16	25	1.97
36491440--36491501	30	2.0	32	84	12	85	43	4	3	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36491483--36491548	35	1.9	34	84	9	89	54	1	3	40	1.25
36491635--36491718	43	2.0	43	87	0	123	45	11	10	32	1.75
36497373--36497401	15	1.9	15	100	0	58	44	34	0	20	1.52
36497648--36497685	13	3.0	13	84	3	51	47	2	2	47	1.30
36498283--36498433	40	3.8	38	79	10	153	21	23	20	34	1.97
36500827--36500916	27	3.3	27	85	3	117	31	40	18	10	1.84
36503773--36506511	750	3.6	760	77	8	2512	29	23	16	30	1.96
36511409--36511442	15	2.3	15	89	0	50	50	11	0	38	1.39
36529337--36529376	19	2.1	19	85	0	53	45	0	5	50	1.23
36529552--36529586	8	4.2	8	96	3	61	37	0	0	62	0.95
36531906--36532062	28	5.6	28	75	1	127	24	23	17	34	1.96
36533311--36533335	12	2.1	12	100	0	50	64	8	20	8	1.46
36534926--36534983	25	2.3	25	90	0	89	20	25	13	39	1.90
36537670--36537783	41	2.8	41	86	4	158	28	27	20	24	1.99
36546151--36546264	41	2.8	41	86	1	165	27	27	20	25	1.99
36546928--36546978	2	26.0	2	76	11	52	45	3	3	47	1.40
36546929--36546981	12	4.2	12	81	13	61	45	5	3	45	1.45
36551613--36551664	23	2.3	22	75	21	54	9	23	1	65	1.32
36556405--36556447	22	2.0	22	81	9	52	34	16	4	44	1.68
36570729--36570765	16	2.3	16	90	0	56	67	21	2	8	1.29
36573773--36573803	14	2.2	14	100	0	62	41	12	19	25	1.87
36577978--36578029	26	2.0	26	96	0	95	28	34	23	13	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36577946--36578211	104	2.6	102	89	3	397	30	31	19	18	1.96
36578547--36578604	30	1.9	30	85	0	80	31	22	8	37	1.84
36581278--36581309	3	10.7	3	100	0	64	31	0	0	68	0.90
36587316--36587341	3	8.7	3	100	0	52	30	0	0	69	0.89
36587633--36587760	43	3.0	42	74	21	138	30	28	17	23	1.97
36589563--36589657	47	2.0	47	91	0	154	18	24	22	34	1.96
36607609--36607673	30	2.2	30	100	0	130	36	12	27	23	1.90
36614046--36614151	48	2.2	48	87	0	149	16	13	28	41	1.86
36626056--36626239	101	1.8	102	88	3	282	25	17	26	31	1.97
36626052--36626238	51	3.7	50	75	9	191	25	17	26	31	1.97
36626244--36626338	45	2.1	45	94	0	163	27	17	23	31	1.97
36632927--36633150	39	5.7	40	85	7	255	24	22	28	24	2.00
36632928--36633150	40	5.6	40	85	7	235	24	22	28	24	2.00
36632980--36633183	79	2.6	79	84	5	218	25	21	27	24	1.99
36633815--36634436	311	2.0	311	100	0	1244	36	12	20	30	1.90
36635461--36635639	88	2.0	88	95	0	322	37	17	15	29	1.90
36644861--36644985	50	2.5	50	76	0	142	24	22	30	22	1.99
36645259--36645297	20	2.0	20	90	10	62	56	5	23	15	1.59
36646806--36646849	23	1.9	23	86	9	63	47	6	27	18	1.73
36652134--36652373	99	2.3	101	83	4	277	23	29	21	26	1.99
36652134--36652380	50	4.8	51	84	5	268	23	29	21	26	1.99
36655794--36655844	18	2.8	18	81	0	57	37	9	37	15	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36655804--36656018	6	36.8	6	72	5	136	33	14	31	20	1.92
36655870--36656029	15	10.3	15	80	4	122	33	15	30	20	1.93
36655813--36656029	39	5.6	39	79	4	170	34	14	30	20	1.92
36658094--36658206	39	2.9	39	93	1	183	29	19	30	20	1.97
36658148--36658206	20	3.0	20	69	11	59	25	18	33	22	1.96
36662162--36662386	43	5.3	42	78	5	150	40	18	20	20	1.91
36667821--36668082	27	9.7	27	82	2	303	45	19	16	18	1.86
36667821--36668082	81	3.2	80	84	4	339	45	19	16	18	1.86
36668479--36668541	28	2.2	28	97	0	117	19	23	26	30	1.98
36671378--36671431	28	2.0	27	96	3	99	24	18	25	31	1.97
36673196--36673236	18	2.3	17	87	8	55	73	2	2	21	1.07
36674694--36674805	44	2.5	45	77	1	118	26	20	15	37	1.92
36674831--36674930	51	2.0	51	89	0	155	27	22	19	32	1.97
36675100--36675185	43	2.0	43	93	0	145	32	25	11	30	1.91
36675154--36675804	51	13.0	51	78	7	582	28	25	16	29	1.97
36675091--36675776	148	4.6	148	78	7	596	29	24	16	29	1.96
36675022--36675803	199	3.9	197	82	5	825	29	24	16	29	1.96
36675529--36675803	101	2.7	103	81	4	344	28	24	17	29	1.98
36675239--36675841	148	4.0	150	75	11	450	29	25	16	29	1.96
36676920--36677037	46	2.5	47	87	6	166	13	27	18	39	1.89
36679473--36679507	15	2.3	15	90	0	52	0	20	0	80	0.72
36682022--36682064	19	2.3	19	84	8	52	41	6	20	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36684473--36684539	3	22.7	3	73	14	59	64	1	4	29	1.22
36684473--36684539	25	3.1	21	76	19	66	64	1	4	29	1.22
36684487--36684539	11	4.5	11	81	11	61	66	0	3	30	1.10
36697694--36697753	27	2.2	27	96	0	111	55	18	3	23	1.58
36701480--36701514	9	3.9	9	88	11	54	34	2	0	62	1.10
36701480--36701515	17	2.1	18	94	5	65	36	2	0	61	1.11
36705597--36705630	18	1.9	17	88	5	50	11	23	0	64	1.26
36720378--36720408	15	2.1	15	93	0	53	41	9	6	41	1.63
36723672--36723704	17	1.9	17	93	0	57	15	12	15	57	1.65
36730001--36730189	51	3.8	49	79	4	198	24	16	28	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218