genome.fa.s23.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  163  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49321586--49321765	54	3.3	54	89	3	256	47	18	2	31	1.61
49321645--49321735	20	4.9	19	71	23	77	50	18	2	28	1.59
49321636--49321815	54	3.0	60	79	16	189	46	21	2	29	1.65
49321754--49321858	16	6.7	15	70	14	61	44	22	2	29	1.67
49321751--49321842	29	3.0	29	75	13	78	45	22	3	28	1.68
49321802--49321883	41	2.0	41	87	0	119	45	21	1	31	1.60
49321833--49321910	25	3.3	25	80	8	92	44	19	0	35	1.51
49323650--49323703	21	2.6	21	90	0	90	44	18	31	5	1.73
49324047--49324172	37	3.1	42	73	18	113	26	20	26	26	1.99
49325404--49325445	18	2.5	17	85	14	52	66	2	0	30	1.04
49325387--49325464	25	3.0	25	81	14	70	61	1	1	35	1.12
49326582--49326621	21	1.9	21	100	0	80	40	0	0	60	0.97
49326550--49326633	30	2.8	31	82	10	95	39	0	1	59	1.05
49329929--49329991	31	2.0	32	87	3	92	19	15	7	57	1.63
49330696--49330739	22	2.0	22	86	0	61	38	2	2	56	1.24
49337228--49337300	36	2.0	36	100	0	146	30	5	24	39	1.78
49350056--49350098	21	2.1	20	83	12	52	13	4	9	72	1.26
49360080--49360199	43	2.8	43	94	0	213	28	18	26	26	1.98
49362200--49362232	13	2.5	13	100	0	66	33	0	0	66	0.92
49383021--49383067	17	2.8	17	86	0	67	42	21	8	27	1.81
49637279--49637367	25	3.1	29	85	12	123	40	6	25	26	1.80
49641940--49642028	25	3.1	29	85	12	123	40	6	25	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49642173--49642197	2	12.5	2	100	0	50	0	48	0	52	1.00
49656286--49656340	24	2.3	24	100	0	110	20	27	3	49	1.65
49657335--49657401	23	2.9	23	97	0	125	20	31	4	43	1.72
49662268--49662304	14	2.7	15	84	16	53	51	0	13	35	1.41
49664441--49664542	17	5.9	17	73	2	60	44	18	6	30	1.76
49665189--49665238	18	2.8	18	76	11	57	48	14	4	34	1.62
49669120--49669242	49	2.4	51	76	9	126	64	0	4	30	1.18
49672313--49672654	50	6.9	50	83	1	375	23	29	19	27	1.98
49673941--49673985	24	1.9	24	95	4	83	31	20	4	44	1.71
49674627--49674705	39	2.0	40	97	2	151	12	10	10	67	1.43
49674629--49674720	39	2.4	39	83	8	134	13	9	7	69	1.36
49688008--49688064	22	2.6	22	78	10	80	15	12	14	57	1.65
49692502--49692547	20	2.3	20	92	0	74	52	15	4	28	1.61
49693813--49694061	50	4.8	50	83	3	273	21	30	22	25	1.99
49693812--49694061	100	2.4	103	86	5	326	22	30	22	25	1.99
49698347--49698392	20	2.3	20	92	0	74	52	15	4	28	1.61
49698355--49698398	20	2.2	20	83	0	52	52	9	4	34	1.54
49706310--49706346	18	2.1	18	89	0	56	24	2	0	72	0.97
49707143--49707333	103	1.9	103	85	2	267	31	14	25	28	1.95
49712138--49712195	22	2.6	22	81	7	64	43	17	1	37	1.59
49712151--49712210	19	2.9	19	80	9	57	40	16	5	38	1.71
49712425--49712514	35	2.6	33	81	14	103	50	13	2	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49718389--49718432	14	3.2	14	80	6	54	70	0	2	27	0.99
49718988--49719041	19	2.8	19	88	0	81	35	16	9	38	1.81
49719520--49719547	9	3.1	9	100	0	56	57	10	0	32	1.33
49719490--49719758	68	4.1	68	89	9	434	45	8	5	40	1.58
49719529--49719736	59	3.4	59	87	11	317	46	9	4	39	1.57
49719490--49719736	127	1.9	127	97	0	467	45	9	5	40	1.59
49719647--49719674	9	3.1	9	100	0	56	57	10	0	32	1.33
49719747--49719788	16	2.6	16	92	0	66	42	7	2	47	1.43
49719762--49719817	23	2.5	23	82	2	69	41	3	3	51	1.36
49719588--49719780	68	3.0	66	91	6	283	47	8	3	39	1.52
49720056--49720145	35	2.6	33	81	14	103	50	13	2	34	1.54
49720966--49721008	21	2.0	21	100	0	86	46	20	13	18	1.83
49725008--49725044	11	3.2	12	85	11	51	48	5	18	27	1.70
49725024--49725048	11	2.3	11	100	0	50	48	8	28	16	1.74
49726763--49726807	24	1.9	24	95	4	83	31	20	4	44	1.71
49727425--49727462	4	9.5	4	83	11	51	26	0	0	73	0.83
49727423--49727462	20	2.0	20	95	0	71	27	0	0	72	0.85
49728356--49728414	26	2.3	26	93	0	100	61	0	11	27	1.31
49729943--49730002	23	2.7	23	82	10	70	8	18	8	65	1.45
49731767--49731793	6	4.5	6	100	0	54	14	0	0	85	0.61
49734870--49735788	477	1.9	478	89	2	1407	30	12	26	30	1.93
49740837--49741177	171	2.0	171	91	1	549	27	18	18	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49745355--49745422	23	2.9	23	91	4	100	19	26	22	32	1.97
49748504--49748530	7	3.9	7	100	0	54	59	0	0	40	0.98
49748641--49748686	23	2.0	24	82	4	58	56	4	2	36	1.31
49752199--49752252	24	2.3	22	79	20	56	33	11	7	48	1.67
49753534--49753571	10	3.8	10	93	6	60	78	2	0	18	0.86
49756232--49756520	43	6.8	43	85	5	383	24	26	20	28	1.99
49756232--49756520	127	2.3	128	87	4	406	24	26	20	28	1.99
49756873--49756923	21	2.4	21	86	0	75	3	45	15	35	1.65
49759064--49759104	13	3.2	13	83	13	57	51	9	4	34	1.56
49759145--49759268	60	2.1	60	90	4	198	42	25	8	23	1.81
49760236--49760918	270	2.5	271	83	2	816	32	19	15	32	1.93
49761243--49761346	44	2.4	42	81	9	118	35	36	0	26	1.64
49761285--49761344	21	2.8	22	73	19	63	36	38	0	25	1.56
49768249--49768311	30	2.1	31	94	5	112	60	7	22	9	1.54
49768956--49769002	19	2.5	19	86	6	60	27	19	8	44	1.79
49771360--49771553	51	3.9	49	80	4	201	25	18	26	29	1.98
49771771--49771802	16	2.0	16	93	0	55	59	0	15	25	1.36
49777444--49777552	44	2.5	44	90	3	166	40	24	16	18	1.90
49777542--49777671	43	3.0	43	88	2	190	34	27	16	21	1.94
49778757--49779977	143	8.5	143	86	1	1518	30	20	21	27	1.98
49783437--49783511	38	2.0	38	81	5	89	37	14	13	34	1.85
49786652--49786704	25	2.1	25	89	0	79	15	5	15	64	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49788311--49788348	17	2.2	17	90	9	60	39	7	0	52	1.31
49788784--49789026	81	3.0	81	98	0	459	35	21	5	37	1.76
49789565--49789669	50	2.1	51	92	1	176	29	7	16	46	1.74
49793543--49793578	18	1.9	18	88	5	54	58	2	0	38	1.13
49793693--49793727	9	3.9	9	100	0	70	42	0	0	57	0.99
49797875--49797921	18	2.6	18	86	0	67	68	2	2	27	1.13
49798205--49798254	18	2.5	20	81	18	68	48	8	12	32	1.69
49798218--49798254	18	2.1	18	100	0	74	48	5	10	35	1.61
49799661--49799736	26	2.8	27	77	18	70	34	18	13	34	1.89
49803381--49803415	18	1.9	19	88	11	56	11	2	8	77	1.10
49804189--49804275	30	2.9	30	84	6	104	34	20	22	21	1.97
49804383--49804472	26	3.5	26	86	3	128	36	23	23	16	1.94
49804660--49804966	27	11.4	27	83	5	255	21	15	18	43	1.87
49804660--49804956	54	5.5	55	83	4	311	21	15	18	43	1.88
49804692--49804966	81	3.4	80	82	5	304	22	15	18	44	1.87
49804692--49804966	54	5.1	54	84	4	322	22	15	18	44	1.87
49808154--49808260	53	2.0	53	96	0	196	43	13	26	16	1.84
49808582--49808613	15	2.1	15	100	0	64	37	31	6	25	1.81
49814074--49814130	28	2.0	28	93	0	96	42	10	17	29	1.83
49819464--49819553	35	2.6	35	90	0	135	40	28	16	14	1.88
49821654--49821683	7	4.1	7	95	4	51	83	0	0	16	0.65
49853905--49854063	7	22.4	7	67	5	68	21	0	28	49	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49853967--49854007	22	1.9	21	90	5	64	12	0	31	56	1.36
49853982--49854029	15	3.3	15	79	5	62	18	0	27	54	1.44
49853979--49854063	36	2.4	36	86	4	109	18	0	30	50	1.47
49853975--49854020	22	2.1	22	83	0	56	15	0	30	54	1.41
49853974--49854051	29	2.7	29	80	4	86	17	0	30	51	1.46
49854001--49854073	36	2.0	36	89	5	112	23	0	28	47	1.52
49854040--49854086	22	2.2	21	88	3	67	27	0	19	53	1.45
49854004--49854088	36	2.4	36	84	4	100	24	0	24	50	1.49
49854690--49854918	113	2.0	113	85	3	309	39	17	21	21	1.92
49863313--49863338	12	2.2	12	100	0	52	11	15	15	57	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218