genome.fa.s23.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  156  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47366732--47366882	74	2.0	74	92	0	248	27	11	19	42	1.85
47367123--47367776	37	17.9	37	76	8	504	26	22	14	36	1.93
47367119--47367777	35	18.1	37	78	9	533	26	23	14	35	1.93
47367078--47367777	148	4.8	144	80	7	681	26	23	14	36	1.93
47370368--47370409	15	2.8	15	85	7	59	0	33	9	57	1.31
47375916--47375969	24	2.3	23	83	6	63	37	1	3	57	1.27
47377724--47377773	23	2.2	23	88	0	73	24	18	14	44	1.86
47390208--47390315	51	2.1	52	91	5	175	29	18	7	44	1.77
47399791--47399832	20	2.1	20	86	0	57	47	0	7	45	1.30
47400531--47400665	49	2.7	49	78	5	139	30	22	24	22	1.99
47408005--47408251	50	4.8	50	78	7	196	27	21	27	23	1.99
47408058--47408251	50	3.9	50	81	4	205	27	22	28	22	1.99
47413507--47413548	20	2.1	20	86	0	57	47	0	7	45	1.30
47413896--47413928	16	2.1	16	100	0	66	51	12	6	30	1.63
47419696--47419736	20	2.0	20	90	9	66	0	12	17	70	1.16
47426945--47427010	4	16.5	4	93	0	114	21	0	28	50	1.49
47441005--47441044	11	3.6	11	93	6	64	22	35	0	42	1.54
47442051--47442088	20	1.9	20	89	10	60	36	2	5	55	1.37
47442928--47442965	18	2.1	18	95	0	67	26	28	2	42	1.69
47443393--47443440	25	1.9	25	100	0	96	45	0	14	39	1.45
47443488--47444012	21	24.0	21	80	11	508	46	27	0	25	1.56
47443488--47444012	44	12.0	44	86	8	600	46	27	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47444079--47444146	27	2.6	25	72	20	66	44	4	1	50	1.31
47444017--47444260	116	2.1	117	90	3	386	40	8	6	44	1.61
47447269--47447620	125	2.8	124	93	1	578	32	22	15	29	1.95
47448204--47448235	14	2.3	14	94	0	55	12	15	0	71	1.14
47454096--47454188	42	2.2	42	88	0	150	25	26	8	38	1.85
47461531--47461741	117	1.8	117	88	2	325	24	11	21	42	1.86
47463484--47463581	44	2.2	44	80	8	112	32	26	16	24	1.96
47465151--47465326	33	5.3	33	77	6	135	27	4	46	21	1.70
47469240--47469313	32	2.3	32	80	0	85	31	8	16	44	1.76
47475799--47475861	26	2.3	26	83	5	72	41	1	0	57	1.08
47475800--47475997	59	3.3	58	70	20	183	41	1	3	54	1.25
47475843--47476020	59	3.0	59	68	15	148	42	1	3	52	1.30
47475781--47476020	120	2.0	120	95	1	437	42	2	3	51	1.31
47475935--47475993	26	2.3	25	85	8	82	40	0	1	57	1.09
47475948--47476003	15	4.0	15	73	17	57	44	0	0	55	0.99
47475856--47476039	41	4.6	40	67	23	109	41	2	3	52	1.31
47476220--47476272	21	2.5	21	90	0	79	32	37	7	22	1.82
47476746--47476826	27	3.0	26	70	21	67	38	2	1	58	1.20
47481456--47481513	26	2.2	26	96	0	107	41	25	13	18	1.88
47482389--47482438	21	2.5	20	80	9	57	12	4	22	62	1.46
47482508--47482532	12	2.1	12	100	0	50	40	16	8	36	1.77
47482931--47482970	11	3.5	11	89	3	53	32	27	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47483689--47483725	18	2.1	18	89	0	56	29	18	13	37	1.90
47486417--47486459	21	2.0	22	86	4	61	51	0	0	48	1.00
47487913--47487953	13	3.2	13	75	25	50	0	31	21	46	1.52
47490888--47490953	18	3.7	18	97	0	123	34	13	12	39	1.82
47491349--47491545	72	2.8	71	82	4	245	27	5	12	53	1.61
47493293--47493336	19	2.3	19	80	7	54	47	2	0	50	1.13
47493562--47493623	24	2.5	24	79	10	72	38	24	3	33	1.71
47493563--47493620	13	4.8	12	77	10	64	39	24	1	34	1.65
47502833--47502873	21	2.0	21	90	0	64	19	26	4	48	1.69
47511751--47511834	44	2.0	42	93	6	143	45	17	4	32	1.70
47517151--47517221	31	2.4	29	77	9	74	47	2	8	40	1.48
47523693--47523722	15	1.9	16	93	6	53	33	36	0	30	1.58
47524201--47524266	31	2.1	31	88	0	96	15	25	9	50	1.73
47524653--47524695	16	2.7	16	86	10	61	55	0	0	44	0.99
47525292--47525343	24	2.2	24	85	0	68	44	1	5	48	1.38
47528263--47528625	50	7.2	50	66	9	202	25	25	21	27	1.99
47528147--47528625	101	4.8	100	87	2	622	27	24	20	27	1.99
47528625--47528842	88	2.5	88	94	0	382	25	27	22	24	1.99
47529874--47529924	15	3.5	15	87	12	63	13	17	0	68	1.21
47529874--47529925	22	2.4	22	90	9	81	15	17	0	67	1.24
47529874--47529925	7	7.3	7	80	20	63	15	17	0	67	1.24
47530426--47530476	10	4.7	11	81	9	52	3	3	9	82	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47530424--47530484	11	5.7	10	79	9	59	3	4	8	83	0.89
47533748--47533775	8	3.5	8	100	0	56	75	0	0	25	0.81
47533853--47533884	3	10.3	3	93	6	55	65	0	0	34	0.93
47535468--47535946	101	4.8	100	86	3	579	26	24	20	28	1.99
47535534--47535946	50	8.2	50	68	6	235	26	24	20	29	1.99
47535945--47536468	88	6.0	88	93	0	859	26	26	20	25	1.99
47537195--47537247	15	3.4	15	76	5	52	39	0	1	58	1.09
47537185--47537247	17	3.7	17	77	6	56	36	0	3	60	1.13
47540353--47540403	15	3.5	15	87	12	63	13	17	0	68	1.21
47540353--47540404	22	2.4	22	90	9	81	15	17	0	67	1.24
47540353--47540404	7	7.3	7	80	20	63	15	17	0	67	1.24
47543775--47543803	12	2.3	13	94	5	51	55	0	13	31	1.39
47543775--47543804	13	2.3	13	94	0	51	56	0	13	30	1.37
47554018--47554087	33	2.1	33	81	5	79	62	11	14	11	1.54
47558847--47558877	14	2.2	14	94	0	53	41	3	25	29	1.71
47561282--47561394	48	2.4	48	81	0	136	30	22	15	31	1.95
47561377--47561572	96	2.0	96	84	1	250	27	22	16	33	1.96
47563758--47563835	39	2.0	39	87	0	111	41	24	6	28	1.79
47566013--47566063	25	2.0	25	81	7	59	21	17	27	33	1.96
47589526--47589586	24	2.6	24	78	17	65	40	0	6	52	1.27
47590977--47591060	40	2.1	40	97	0	159	29	10	10	48	1.72
47596275--47596316	17	2.5	17	80	3	50	40	4	0	54	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47602479--47602528	23	2.1	24	82	17	61	38	4	8	50	1.51
47604674--47604707	7	4.9	7	96	0	59	17	0	23	58	1.38
47608280--47608450	55	3.1	55	61	20	129	45	8	10	36	1.69
47608844--47608887	7	6.1	7	92	7	63	56	0	0	43	0.99
47608845--47608883	8	5.1	8	90	9	64	51	0	0	48	1.00
47608844--47608883	15	2.7	15	88	11	64	52	0	0	47	1.00
47616841--47616955	54	2.1	54	81	0	131	21	22	26	28	1.99
47618443--47618624	63	2.9	63	81	2	188	26	19	24	29	1.99
47628829--47628867	14	2.7	15	84	15	55	64	0	28	7	1.21
47630267--47630322	28	2.0	28	100	0	112	42	3	17	35	1.67
47647283--47647320	19	2.1	19	90	5	60	65	2	0	31	1.06
47655838--47655863	13	2.0	13	100	0	52	53	15	7	23	1.67
47663285--47663382	45	2.2	45	81	3	108	42	8	20	28	1.80
47663376--47663417	6	6.8	6	97	2	75	52	0	30	16	1.44
47665274--47665314	13	3.2	13	74	19	50	29	14	24	31	1.95
47665262--47665340	25	3.2	24	72	13	79	25	16	24	34	1.95
47665272--47665354	25	3.3	25	77	11	98	28	14	21	34	1.93
47685058--47685149	14	6.6	13	67	18	51	39	1	2	57	1.18
47685084--47685197	55	2.1	53	87	6	158	42	0	3	53	1.18
47706111--47706146	18	2.0	18	100	0	72	22	22	33	22	1.97
47710628--47710808	25	7.3	25	70	10	129	36	25	12	25	1.91
47720344--47720504	74	2.2	73	97	1	304	44	36	1	17	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47720344--47720504	73	2.2	68	87	11	196	44	36	1	17	1.60
47720664--47720712	8	5.9	8	84	15	64	85	2	12	0	0.68
47720662--47720709	25	2.0	25	91	4	80	85	2	12	0	0.69
47720662--47720716	25	2.1	26	86	6	76	85	3	10	0	0.72
47727146--47727213	25	2.7	25	75	8	66	25	17	26	30	1.97
47732997--47733070	20	3.7	20	82	13	82	22	1	0	75	0.88
47733018--47733062	4	11.8	4	86	13	60	26	0	0	73	0.84
47733002--47733068	15	4.5	14	82	14	73	23	0	0	76	0.79
47733245--47733293	21	2.5	20	87	9	66	16	6	4	73	1.19
47749115--47749276	50	3.3	50	84	1	209	38	22	13	24	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218