genome.fa.s23.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  160  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48601010--48601049	18	2.2	18	86	0	53	17	30	7	45	1.76
48601592--48602459	22	40.0	22	80	7	884	44	29	0	25	1.60
48601878--48601959	27	3.2	27	78	16	111	41	36	0	21	1.54
48601878--48601978	21	4.2	26	67	24	78	42	34	0	22	1.54
48602171--48602228	15	3.5	15	73	24	53	44	32	0	22	1.53
48602193--48602228	15	2.4	15	100	0	72	44	30	0	25	1.54
48605635--48606198	125	4.5	125	86	4	742	29	23	16	30	1.96
48605636--48606198	252	2.2	249	87	2	781	29	23	16	30	1.96
48610536--48610573	19	2.0	19	94	0	67	55	0	21	23	1.44
48614254--48614320	33	2.0	33	91	0	107	37	31	14	16	1.89
48615570--48615607	19	2.0	19	94	0	67	55	0	21	23	1.44
48627663--48628072	44	9.7	43	69	16	176	23	20	23	32	1.98
48627649--48628060	87	4.9	85	70	15	271	24	21	22	32	1.98
48627562--48628072	127	4.0	127	90	1	731	24	21	22	31	1.98
48627648--48628072	43	10.0	43	68	14	238	24	20	22	32	1.98
48629378--48629442	7	9.6	7	82	12	82	10	12	1	75	1.12
48629713--48629820	45	2.4	45	98	0	207	19	28	17	34	1.95
48639605--48639990	194	2.0	194	91	1	630	35	22	7	34	1.82
48652692--48652758	31	2.2	31	88	0	98	47	7	13	31	1.70
48657037--48657104	23	3.1	23	76	18	81	52	0	2	44	1.16
48657039--48657103	20	2.9	22	80	15	71	53	0	3	43	1.16
48657039--48657123	43	2.0	44	81	6	102	52	1	3	42	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48657085--48657133	20	2.4	20	74	16	55	46	2	2	48	1.25
48658626--48658820	72	2.7	72	87	2	284	28	29	23	18	1.98
48658768--48659189	114	3.7	114	86	1	551	27	20	24	28	1.99
48658763--48659191	228	1.9	229	87	2	639	26	20	24	27	1.99
48659712--48659758	14	3.3	15	82	8	62	27	0	31	40	1.57
48659753--48659793	20	2.0	21	85	4	57	24	0	39	36	1.56
48659796--48659835	15	2.7	15	88	0	53	20	0	42	37	1.52
48660549--48660780	98	2.4	93	84	5	268	46	11	14	28	1.78
48661053--48661105	25	2.1	26	82	10	65	73	5	3	16	1.17
48661091--48661194	47	2.2	48	94	3	183	47	7	0	44	1.38
48665341--48665371	15	2.1	15	93	0	53	48	0	32	19	1.49
48665724--48665932	85	2.4	86	83	1	249	23	19	30	26	1.98
48665724--48665932	43	4.9	43	82	2	251	23	19	30	26	1.98
48673572--48673639	34	2.0	34	82	5	84	20	25	23	30	1.98
48681866--48681904	19	2.0	20	90	10	62	48	0	0	51	1.00
48681964--48682014	20	2.7	19	81	6	59	50	0	1	47	1.12
48681970--48682018	19	2.4	21	80	13	57	46	0	2	51	1.12
48689104--48689129	13	2.0	13	100	0	52	38	0	7	53	1.30
48692272--48692439	47	3.6	45	72	19	150	45	2	3	47	1.35
48692198--48692405	91	2.3	91	92	0	335	46	3	3	46	1.37
48692219--48692380	44	3.6	43	70	19	125	45	1	3	49	1.30
48692320--48692380	28	2.2	28	85	5	81	45	0	3	50	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48692459--48692655	65	3.2	65	71	19	222	42	4	5	48	1.44
48692421--48692936	119	4.4	118	91	5	793	43	3	5	48	1.40
48692541--48692575	18	2.0	17	88	5	52	45	0	0	54	0.99
48692777--48692832	17	3.3	18	74	20	50	42	0	0	57	0.99
48692781--48692822	15	2.9	15	82	10	52	47	0	0	52	1.00
48693163--48693225	16	3.9	16	85	0	81	23	31	3	41	1.70
48693156--48693220	32	2.0	32	93	0	112	21	32	4	41	1.74
48696733--48696774	20	2.1	20	86	8	59	35	4	19	40	1.72
48703186--48703236	23	2.2	23	96	0	93	37	21	11	29	1.89
48703329--48703369	6	7.2	6	82	17	52	82	14	2	0	0.76
48703329--48703369	11	3.7	11	90	9	66	82	14	2	0	0.76
48703832--48703888	20	2.9	20	81	2	62	82	3	10	3	0.91
48704781--48705261	44	11.3	43	69	13	228	29	20	23	26	1.99
48704825--48704985	87	1.8	86	82	10	202	27	21	23	27	1.99
48704954--48705167	87	2.4	87	78	7	211	29	18	25	26	1.98
48704765--48705137	131	2.8	131	90	0	584	29	20	24	26	1.99
48705086--48705669	128	4.6	128	87	2	754	33	21	20	24	1.97
48705243--48705604	44	8.5	41	66	15	155	34	22	18	24	1.96
48710391--48710519	66	2.0	66	93	3	224	24	21	21	32	1.98
48719234--48719347	43	2.7	43	73	1	113	27	28	15	28	1.96
48726332--48726374	21	2.1	21	86	4	61	27	6	0	65	1.18
48727276--48727322	20	2.4	20	86	10	62	40	2	34	23	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48727419--48727515	41	2.4	40	82	3	122	13	24	18	43	1.86
48733915--48733958	21	2.1	21	95	0	79	40	9	11	38	1.73
48733914--48733969	21	2.8	19	82	10	76	39	8	14	37	1.77
48733958--48734005	23	2.2	23	85	7	64	31	6	14	47	1.69
48734432--48734463	10	3.1	11	86	13	50	37	0	0	62	0.95
48734432--48734478	23	2.0	23	84	8	60	38	6	0	55	1.26
48737702--48737731	16	1.9	16	93	6	53	60	10	16	13	1.59
48739662--48739706	16	2.8	16	80	9	56	37	0	4	57	1.19
48741300--48741350	22	2.3	22	80	13	59	58	0	1	39	1.09
48741637--48741678	21	2.0	21	86	9	59	50	0	0	50	1.00
48749484--48749522	7	5.7	7	85	14	55	43	0	0	56	0.99
48749650--48749718	22	3.1	22	100	0	138	46	31	0	21	1.52
48749453--48749655	102	2.0	102	94	0	352	46	16	1	35	1.56
48749759--48749880	59	2.1	58	92	1	199	40	10	10	38	1.75
48752873--48753306	125	3.5	124	88	1	629	29	20	17	32	1.96
48753427--48753499	31	2.4	31	90	6	114	52	30	0	17	1.46
48758239--48758286	17	2.9	17	90	3	71	54	18	0	27	1.44
48764680--48764709	6	5.0	6	95	0	51	16	13	33	36	1.88
48783621--48783840	106	2.0	109	84	7	286	28	11	20	39	1.88
48786447--48786656	107	2.0	107	96	0	384	40	12	11	34	1.80
48787053--48787134	38	2.2	38	95	0	146	46	13	18	21	1.83
48790484--48790527	18	2.5	17	79	20	54	61	6	2	29	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48790801--48790861	30	2.0	31	87	3	88	34	1	47	16	1.56
48794143--48794203	30	2.0	30	100	0	122	29	3	22	44	1.69
48803458--48803539	31	2.7	31	79	9	89	31	19	3	45	1.68
48803458--48803525	30	2.2	30	84	7	84	32	20	2	44	1.67
48804310--48804338	14	2.1	14	100	0	58	34	13	6	44	1.71
48804696--48804720	11	2.3	11	100	0	50	60	8	8	24	1.52
48813192--48813284	30	3.2	29	71	11	84	23	17	9	49	1.76
48816147--48816233	30	2.9	31	77	3	79	29	21	5	42	1.76
48818082--48818171	44	2.0	44	81	8	103	57	4	6	31	1.44
48830098--48830132	16	2.2	16	89	0	52	54	0	25	20	1.45
48836837--48836876	21	1.9	21	90	10	64	27	5	20	47	1.70
48841072--48841213	70	2.0	70	95	0	257	29	15	17	37	1.91
48847204--48847228	11	2.3	11	100	0	50	84	0	0	16	0.63
48849699--48849739	21	2.0	21	85	9	57	53	4	2	39	1.35
48852543--48852600	31	1.9	31	89	3	91	36	10	6	46	1.65
48853070--48853190	43	2.8	43	96	0	215	32	28	19	19	1.96
48855829--48855879	16	3.4	16	68	15	54	27	39	23	9	1.86
48855823--48855882	29	2.1	29	100	0	120	28	41	20	10	1.84
48856995--48857052	3	19.3	3	76	0	53	32	3	5	58	1.37
48856997--48857040	15	2.9	15	86	0	61	31	2	4	61	1.28
48858875--48859022	14	9.9	14	67	17	50	36	42	2	18	1.62
48858937--48859030	7	12.9	7	70	12	55	36	45	2	15	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48858976--48859035	14	4.1	15	77	14	63	40	45	1	13	1.53
48858898--48859027	37	3.5	37	87	4	163	36	41	2	19	1.64
48858975--48859048	21	3.4	21	75	12	60	40	44	1	13	1.52
48859437--48859546	41	2.7	41	85	2	141	30	29	20	20	1.98
48859242--48859505	114	2.3	113	89	0	393	26	26	22	23	2.00
48859337--48859661	156	2.1	155	87	1	463	29	25	21	23	1.99
48859634--48859846	74	3.0	72	85	6	283	26	23	21	28	1.99
48859523--48859988	254	1.8	258	86	4	681	27	24	21	26	1.99
48859779--48860095	114	2.8	111	86	6	419	27	25	21	25	1.99
48861932--48861966	16	2.1	17	89	5	54	42	0	2	54	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218