genome.fa.s23.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  164  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49864607--49864719	42	2.7	42	88	0	163	21	19	30	29	1.97
49866195--49866258	27	2.4	27	84	2	76	51	3	4	40	1.38
49870671--49870764	26	3.7	26	75	2	75	38	22	21	18	1.93
49870670--49870753	26	3.3	25	79	3	87	35	22	22	19	1.96
49870973--49871264	27	10.8	27	87	2	349	22	18	19	39	1.92
49873251--49873287	5	7.4	5	93	0	65	62	2	0	35	1.10
49875522--49875566	6	7.7	6	87	5	56	26	0	0	73	0.84
49875519--49875566	17	2.8	17	87	3	60	27	0	0	72	0.84
49879157--49879190	17	2.0	17	88	11	52	23	0	5	70	1.09
49886245--49886278	15	2.4	14	90	5	50	79	0	5	14	0.91
49897939--49898130	10	19.4	10	70	19	95	67	0	31	0	0.98
49897997--49898129	6	20.0	6	72	15	59	70	0	27	0	0.97
49897955--49898091	41	3.4	40	84	10	181	69	0	29	0	0.94
49897955--49898131	79	2.2	78	81	12	193	68	0	29	0	0.98
49898028--49898129	6	15.8	6	73	15	62	72	0	26	0	0.91
49898453--49899248	159	5.1	153	75	14	749	51	7	10	29	1.64
49898454--49899251	316	2.5	316	93	1	1355	51	8	10	29	1.65
49904495--49904629	40	3.2	40	78	13	139	51	12	3	32	1.57
49912689--49912718	12	2.5	12	94	0	51	6	0	40	53	1.27
49913493--49913711	111	1.9	115	90	6	358	41	14	16	27	1.87
49917064--49917110	20	2.3	21	85	3	60	25	6	6	61	1.44
49919454--49919501	17	2.7	18	74	6	53	50	0	2	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49919782--49919817	17	2.2	17	95	5	65	75	5	0	19	1.00
49920607--49921036	205	2.0	212	84	5	568	31	23	18	25	1.98
49921575--49921669	46	2.1	46	95	0	172	42	23	2	32	1.66
49926160--49926282	22	5.4	22	64	21	74	37	25	2	34	1.69
49926182--49926260	24	3.4	24	67	19	76	40	24	1	34	1.63
49926147--49926287	46	3.1	46	100	0	282	40	23	2	34	1.67
49926375--49926417	22	2.0	21	90	4	68	20	2	25	51	1.60
49926685--49926714	15	2.0	15	93	0	51	63	0	3	33	1.11
49926922--49926959	20	1.9	20	94	0	67	34	0	7	57	1.28
49927473--49927517	19	2.4	19	84	0	63	33	42	2	22	1.66
49927865--49927889	12	2.1	12	100	0	50	40	0	8	52	1.31
49929052--49929092	21	2.0	21	95	0	73	26	17	51	4	1.65
49929510--49929895	43	9.0	43	87	1	486	28	18	29	23	1.98
49929455--49929877	86	4.9	86	85	1	215	29	17	28	23	1.97
49931759--49931944	51	3.7	50	84	2	210	27	26	18	26	1.98
49939373--49939503	50	2.6	51	82	3	158	27	28	16	27	1.97
49943023--49943056	17	2.0	17	88	0	50	41	0	14	44	1.45
49944351--49944434	43	2.0	43	90	0	132	32	17	13	36	1.88
49953830--49953925	34	2.7	35	77	9	97	40	19	8	31	1.81
49954463--49954652	78	2.5	76	80	5	195	40	17	4	37	1.70
49954798--49955148	78	4.5	78	94	1	616	44	12	3	39	1.61
49962320--49962356	19	1.9	19	100	0	74	54	0	24	21	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49962919--49962960	19	2.3	18	87	4	57	50	4	2	42	1.36
49964251--49964326	40	1.9	40	86	0	107	27	13	22	36	1.91
49977639--49977745	51	2.1	51	94	0	187	36	17	5	40	1.74
49977961--49978072	40	2.8	40	85	5	156	43	22	15	18	1.87
49977945--49978084	40	3.5	40	74	13	135	40	21	17	21	1.92
49978145--49978261	41	2.9	41	88	2	164	18	23	23	34	1.96
49979302--49979361	7	8.7	7	77	3	50	18	1	38	41	1.60
49979756--49979827	20	3.6	19	71	15	65	45	1	4	48	1.30
49979762--49979821	10	5.8	10	78	11	50	48	0	5	46	1.24
49981942--49981995	24	2.3	24	80	3	65	20	14	18	46	1.84
49984027--49984117	43	2.1	43	93	0	155	20	16	31	30	1.95
49999581--49999613	5	6.4	5	96	3	57	18	3	0	78	0.87
50004217--50004278	27	2.3	27	86	5	90	40	19	20	19	1.92
50004406--50004525	27	4.5	27	77	4	127	25	12	23	39	1.89
50004418--50004522	53	2.0	54	84	1	140	25	14	20	39	1.91
50009310--50009348	16	2.4	16	86	4	51	10	0	2	87	0.65
50009309--50009334	9	2.9	9	100	0	52	7	0	0	92	0.39
50009315--50009349	13	2.8	13	86	4	54	11	0	5	82	0.82
50019421--50019557	40	3.5	40	76	7	129	39	22	18	18	1.92
50019597--50019873	41	6.8	40	81	5	286	20	22	23	32	1.98
50019597--50019873	123	2.2	122	82	5	326	20	22	23	32	1.98
50020755--50020797	14	3.0	15	83	16	56	25	0	34	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50021127--50021170	19	2.3	19	92	0	70	79	2	2	15	0.93
50021864--50021964	7	13.4	7	74	12	67	21	2	45	29	1.67
50021878--50021937	8	7.8	8	73	14	54	23	1	43	31	1.64
50021871--50021960	16	5.9	15	76	14	94	22	3	45	28	1.68
50021868--50021982	46	2.5	46	91	2	180	20	3	46	29	1.68
50021886--50021982	23	4.3	23	79	6	108	21	4	44	29	1.71
50021843--50021983	7	19.0	7	71	15	61	21	2	43	31	1.67
50025355--50025414	33	1.9	30	80	12	68	33	8	15	43	1.76
50025496--50025528	10	3.1	11	86	8	50	33	9	21	36	1.85
50025563--50025654	13	6.9	13	71	18	73	45	8	3	42	1.51
50025546--50025801	40	6.5	39	78	11	197	44	10	1	42	1.50
50025691--50025781	22	4.6	21	72	20	72	43	13	0	42	1.43
50025695--50025756	17	3.6	17	84	4	70	46	12	0	40	1.42
50025695--50025783	18	4.8	18	79	14	101	46	12	0	41	1.41
50025886--50025941	27	2.1	27	96	0	103	42	7	3	46	1.48
50025883--50026183	121	2.5	120	91	3	417	41	8	5	44	1.58
50026159--50026210	27	1.9	27	100	0	104	42	7	1	48	1.43
50026267--50026548	25	11.2	25	74	6	194	46	19	2	32	1.63
50026267--50026628	9	43.0	9	65	17	152	46	19	2	31	1.63
50026383--50026570	75	2.5	75	93	3	308	45	18	2	34	1.61
50026267--50026514	118	2.1	119	84	5	317	46	18	2	32	1.62
50032020--50032189	66	2.6	66	84	3	209	41	18	27	12	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50032171--50032272	21	4.9	21	76	0	87	38	15	40	5	1.72
50032580--50032830	86	2.9	86	85	2	326	25	15	29	29	1.95
50032594--50032911	43	7.4	43	73	6	178	24	19	28	27	1.98
50033030--50033073	22	2.0	22	95	0	79	43	27	20	9	1.82
50034555--50034606	15	3.5	15	76	10	61	13	13	44	28	1.82
50037695--50037877	29	6.3	29	83	0	204	22	28	13	36	1.91
50037693--50037872	87	2.1	87	89	0	270	22	28	12	36	1.91
50039715--50039919	43	4.8	43	86	3	288	29	32	17	20	1.96
50040120--50040178	18	3.3	18	63	13	50	40	10	6	42	1.65
50044243--50044274	16	2.0	16	100	0	64	31	18	18	31	1.95
50045062--50045097	14	2.5	14	95	4	63	36	41	2	19	1.66
50045971--50046018	18	2.7	17	90	6	69	43	0	6	50	1.27
50046457--50046574	41	2.9	41	87	0	173	29	28	18	22	1.98
50046548--50046603	29	1.9	29	92	0	94	37	26	23	12	1.90
50046507--50046644	70	2.0	70	88	5	208	32	26	21	19	1.97
50046577--50046678	41	2.5	41	88	0	150	30	27	20	21	1.98
50046466--50046678	111	1.9	111	86	0	300	30	27	20	20	1.98
50046726--50046847	40	3.1	38	77	6	118	23	19	18	37	1.94
50046771--50046848	40	2.0	40	89	0	120	21	20	23	34	1.97
50054823--50054973	71	2.1	72	91	2	243	30	29	16	23	1.96
50054893--50055115	104	2.2	103	92	2	367	31	31	18	17	1.95
50055444--50055507	30	2.2	29	81	10	76	29	28	6	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50055451--50055507	30	1.9	30	85	3	80	29	24	7	38	1.82
50062377--50062529	71	2.1	72	92	1	254	30	29	17	22	1.97
50062448--50062671	104	2.2	104	93	1	378	31	31	19	17	1.95
50063000--50063063	30	2.2	29	81	10	76	29	28	6	35	1.82
50063007--50063063	30	1.9	30	85	3	80	29	24	7	38	1.82
50064217--50064244	12	2.3	12	100	0	56	35	14	10	39	1.81
50064251--50064395	13	11.2	13	71	17	79	24	13	8	52	1.69
50064251--50064385	12	10.7	12	71	15	76	25	14	8	51	1.71
50065157--50065210	22	2.5	20	82	11	63	25	1	0	72	0.95
50066296--50066508	115	1.9	113	91	5	349	31	12	22	33	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218