genome.fa.s23.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  173  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52326592--52326742	72	2.1	71	91	2	241	30	29	16	23	1.96
52326661--52326884	104	2.2	104	93	1	378	31	31	19	17	1.95
52327213--52327276	30	2.2	29	81	10	76	29	28	6	35	1.82
52327220--52327276	30	1.9	30	85	3	80	29	24	7	38	1.82
52332547--52332612	23	3.0	23	82	4	73	45	4	1	48	1.32
52332653--52332742	17	5.4	17	71	26	68	53	2	3	41	1.30
52342005--52342196	50	3.8	50	74	9	160	21	14	30	33	1.93
52342011--52342191	100	1.8	101	83	6	242	21	15	29	33	1.94
52342291--52342334	23	1.9	22	82	17	54	38	0	25	36	1.56
52346194--52346228	17	2.0	18	88	5	54	22	2	0	74	0.95
52349852--52349893	19	2.2	20	83	12	52	66	14	16	2	1.35
52351085--52351166	40	2.0	43	88	9	125	34	2	10	52	1.50
52355131--52355177	21	2.2	22	92	3	78	21	19	38	21	1.94
52358227--52358262	18	2.0	18	100	0	72	44	5	16	33	1.71
52362538--52362584	21	2.2	22	92	3	78	21	19	38	21	1.94
52365475--52365503	13	2.2	13	100	0	58	51	0	0	48	1.00
52366710--52366742	17	1.9	17	93	0	57	48	9	6	36	1.60
52366722--52366804	36	2.3	36	93	2	141	36	15	4	43	1.68
52374383--52374417	18	2.0	17	88	5	52	54	0	0	45	0.99
52374624--52374658	18	2.0	17	88	5	52	54	0	0	45	0.99
52374366--52375108	120	6.2	120	97	1	1373	48	5	2	43	1.40
52374366--52375108	239	3.1	239	97	0	1380	48	5	2	43	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52374366--52375108	359	2.1	361	96	1	1375	48	5	2	43	1.40
52378131--52378240	33	3.3	33	81	11	136	31	8	17	42	1.78
52378187--52378403	51	4.0	51	85	15	303	28	7	18	46	1.76
52378237--52378341	33	3.3	33	63	12	92	27	7	18	46	1.76
52378286--52378313	12	2.3	12	100	0	56	21	0	21	57	1.41
52378235--52378364	63	2.1	63	100	0	260	27	6	18	47	1.72
52378187--52378403	114	1.9	113	97	2	409	28	7	18	46	1.76
52378470--52378650	86	2.1	86	98	1	355	47	7	4	40	1.52
52382042--52382098	26	2.2	26	78	12	64	54	1	0	43	1.10
52383137--52383181	22	2.0	23	82	4	56	48	4	0	46	1.22
52383863--52384064	109	1.9	109	93	2	352	33	19	17	29	1.95
52384652--52384702	22	2.3	22	93	0	84	50	0	9	39	1.35
52384654--52384712	22	2.8	21	85	10	68	52	1	8	37	1.42
52386280--52386396	44	2.7	44	81	6	139	23	23	23	28	2.00
52386530--52386923	88	4.5	88	86	4	468	24	22	23	29	1.99
52386687--52386924	44	5.5	44	66	12	143	26	23	22	27	2.00
52394452--52394657	108	1.9	108	92	2	351	33	19	17	28	1.95
52395232--52395281	22	2.3	22	89	0	73	48	4	10	38	1.56
52395242--52395290	22	2.2	22	92	0	80	51	0	10	38	1.36
52395232--52395300	22	3.2	21	82	11	70	50	4	8	36	1.53
52397190--52397252	25	2.6	24	76	14	67	57	0	0	42	0.99
52397446--52397479	17	2.0	17	94	0	59	26	0	2	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52400933--52400964	16	2.0	16	100	0	64	31	12	6	50	1.65
52402203--52402236	17	2.0	17	94	0	59	44	14	5	35	1.70
52405473--52405518	24	1.9	24	95	0	83	52	19	0	28	1.47
52410036--52410069	17	2.0	17	100	0	68	23	17	17	41	1.90
52418806--52418907	25	4.1	25	83	7	127	21	31	16	30	1.96
52418816--52418921	50	2.1	50	87	0	149	21	30	17	30	1.97
52420026--52420059	17	2.0	17	100	0	68	5	23	23	47	1.73
52428293--52428335	22	1.9	22	85	4	59	53	4	0	41	1.21
52428632--52428671	20	2.0	20	85	0	53	32	20	2	45	1.64
52430117--52430157	15	2.7	15	84	0	55	65	14	14	4	1.42
52432707--52432768	26	2.4	26	83	5	72	58	11	1	29	1.42
52434375--52434412	19	2.0	19	85	10	51	42	0	15	42	1.47
52434868--52434913	17	2.7	17	96	0	83	67	8	6	17	1.39
52436205--52436312	23	4.9	23	76	7	73	18	17	25	38	1.92
52436251--52436298	21	2.3	21	92	0	78	14	27	29	29	1.95
52437582--52437743	28	5.8	28	74	7	130	24	17	3	54	1.58
52444382--52444435	24	2.2	24	80	0	63	40	3	5	50	1.44
52445082--52445137	28	2.0	28	89	3	87	28	10	5	55	1.56
52445123--52445182	28	2.1	28	84	0	75	15	20	11	53	1.72
52447721--52447957	90	2.6	90	82	0	294	27	24	14	33	1.94
52448007--52448109	51	2.0	51	98	0	197	26	11	26	35	1.90
52448732--52448775	23	2.0	23	81	4	54	45	11	4	38	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52450855--52450968	58	2.0	58	92	0	192	34	7	16	41	1.78
52451279--52451348	29	2.5	28	84	6	88	47	5	1	45	1.35
52451745--52451787	20	2.1	21	87	8	63	41	0	4	53	1.21
52461069--52461262	96	2.0	97	98	1	381	32	15	12	39	1.85
52462954--52463371	109	3.8	109	91	1	660	34	18	16	29	1.93
52463402--52463446	21	2.2	21	88	11	67	60	2	8	28	1.39
52465615--52465806	44	4.4	44	68	18	148	28	24	17	29	1.97
52465483--52465809	131	2.5	131	95	1	575	29	23	17	29	1.97
52465896--52466174	49	5.7	49	71	5	195	23	20	23	32	1.97
52465845--52466424	50	11.7	50	69	4	294	23	21	22	32	1.98
52465829--52466436	99	6.1	99	86	0	707	23	20	22	33	1.97
52471702--52472209	253	2.0	254	94	0	901	19	31	13	35	1.90
52477885--52477986	49	2.1	49	100	0	204	45	24	11	18	1.83
52478502--52478927	109	3.9	109	89	1	640	35	19	15	29	1.92
52478953--52478997	21	2.2	21	88	11	67	60	2	8	28	1.39
52479113--52479155	18	2.3	18	80	11	52	69	11	4	13	1.33
52489320--52489349	15	2.0	15	93	0	51	0	0	16	83	0.65
52492421--52492453	15	2.1	16	88	5	50	63	3	6	27	1.32
52493944--52494006	33	1.9	33	90	0	99	33	23	19	23	1.97
52497211--52497247	18	2.1	18	89	0	56	8	18	32	40	1.80
52503922--52503962	22	1.9	22	90	5	66	34	7	7	51	1.58
52504031--52504065	17	2.0	18	88	5	54	60	2	0	37	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52504650--52504693	19	2.4	17	82	14	52	54	2	9	34	1.44
52505688--52505716	10	2.9	10	100	0	58	20	20	27	31	1.98
52518723--52518755	17	1.9	18	88	11	52	42	9	0	48	1.35
52520415--52520546	51	2.6	51	80	2	149	24	17	25	32	1.97
52520362--52520546	101	1.8	102	84	5	259	24	16	25	32	1.96
52520555--52520641	45	1.9	45	92	0	147	26	16	24	33	1.95
52526042--52526173	51	2.6	51	80	2	149	24	17	25	32	1.97
52525989--52526173	101	1.8	102	84	5	259	24	16	25	32	1.96
52526182--52526268	45	1.9	45	92	0	147	26	16	24	33	1.95
52531461--52531599	59	2.4	58	86	7	201	38	12	29	18	1.88
52531725--52531829	33	3.2	32	80	2	102	45	16	18	20	1.85
52537455--52537485	16	1.9	16	93	0	53	48	0	9	41	1.36
52539112--52539212	49	2.1	47	82	10	116	20	24	18	35	1.95
52541789--52541838	16	3.1	16	85	2	55	42	8	12	38	1.71
52541977--52542013	3	12.3	3	100	0	74	35	0	0	64	0.94
52542205--52542231	5	5.4	5	100	0	54	22	0	0	77	0.76
52542251--52542282	12	2.6	13	90	9	50	37	0	0	62	0.95
52551819--52551850	5	6.4	5	92	0	55	25	18	15	40	1.90
52564982--52565008	13	2.1	13	100	0	54	48	14	0	37	1.45
52569900--52570260	95	3.8	95	79	1	357	36	13	18	31	1.90
52570183--52570519	130	2.6	130	83	1	415	39	16	15	29	1.88
52574308--52574342	11	3.1	11	95	4	61	80	0	2	17	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52576861--52576907	19	2.4	18	83	13	58	34	10	4	51	1.56
52600527--52600572	22	2.0	22	84	12	58	78	4	4	13	1.05
52601123--52601176	21	2.6	21	85	5	74	68	3	0	27	1.06
52601139--52601197	11	5.2	11	71	20	50	76	1	0	22	0.88
52601139--52601200	27	2.3	27	78	13	65	77	1	0	20	0.85
52601139--52601200	18	3.6	17	75	12	56	77	1	0	20	0.85
52601145--52601199	14	3.9	13	83	7	56	76	1	0	21	0.88
52604319--52604428	57	1.9	57	88	0	166	39	1	21	37	1.64
52614200--52614237	18	2.2	17	86	9	51	21	7	2	68	1.28
52618376--52618420	21	2.0	23	87	8	67	51	2	0	46	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218