genome.fa.s23.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  191  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56711733--56711945	86	2.5	86	83	5	234	33	8	15	41	1.79
56711928--56712024	40	2.4	40	79	5	97	29	6	14	49	1.67
56711969--56712053	40	2.1	40	85	8	111	30	4	12	51	1.60
56713099--56713148	18	2.8	18	78	0	55	26	8	2	64	1.32
56718039--56718270	43	5.4	42	87	4	261	24	15	27	32	1.95
56718039--56718278	129	1.9	127	83	5	313	24	14	27	33	1.94
56718039--56718280	86	2.8	86	85	4	314	23	14	27	34	1.94
56718122--56718299	86	2.1	86	82	0	221	25	16	25	32	1.97
56721981--56722039	25	2.3	25	91	2	91	27	10	22	40	1.85
56722793--56722832	14	2.9	14	88	0	53	57	20	2	20	1.52
56722906--56723086	89	2.0	90	95	2	328	33	13	16	36	1.88
56723492--56723532	20	2.0	20	86	9	57	51	9	0	39	1.35
56724492--56724582	44	2.1	44	91	0	146	47	2	6	43	1.41
56728836--56728883	25	1.9	25	95	0	87	22	10	16	50	1.76
56730528--56730748	38	5.8	38	82	6	234	14	20	29	35	1.92
56730541--56730748	76	2.7	75	86	5	258	14	19	29	36	1.92
56730722--56730764	16	2.7	16	100	0	86	11	11	32	44	1.77
56730528--56730748	114	1.9	114	86	3	311	14	20	29	35	1.92
56730620--56730864	130	1.9	130	85	5	343	13	20	28	37	1.90
56730763--56730854	38	2.4	38	83	3	114	14	22	29	33	1.93
56732847--56732891	6	7.7	6	82	5	56	2	15	2	80	0.92
56737626--56737692	26	2.6	25	81	9	82	40	10	16	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56749929--56749961	17	1.9	17	88	11	50	48	6	27	18	1.71
56750086--56750334	27	9.3	26	87	4	309	39	21	21	17	1.92
56750086--56750333	54	4.6	54	89	1	356	39	20	21	17	1.92
56750086--56750333	81	3.1	81	87	4	349	39	20	21	17	1.92
56750483--56750581	26	3.8	26	78	5	67	16	22	23	38	1.93
56750512--56750583	26	2.8	26	87	4	92	13	22	25	38	1.91
56761188--56761222	15	2.2	16	95	5	63	37	0	0	62	0.95
56761237--56761286	16	3.2	16	70	18	52	52	0	0	48	1.00
56761227--56761304	29	2.9	26	77	17	70	55	0	1	43	1.08
56770974--56771025	27	1.9	27	84	7	70	44	17	7	30	1.77
56799227--56799269	22	2.0	22	95	0	77	18	23	11	46	1.82
56802411--56802454	22	2.0	22	81	0	52	43	9	18	29	1.80
56808668--56808759	3	29.3	3	68	12	51	29	5	3	61	1.34
56808632--56808700	18	3.7	19	75	14	63	31	4	2	60	1.31
56812380--56812409	14	2.1	14	93	0	51	43	16	0	40	1.48
56815269--56815330	26	2.4	26	88	0	97	25	20	20	32	1.98
56822232--56822422	23	8.3	23	91	2	303	29	26	21	21	1.99
56825428--56825476	22	2.2	23	88	3	73	24	4	0	71	1.03
56840994--56841047	27	2.0	27	96	0	99	55	27	0	16	1.42
56845630--56845667	2	19.0	2	100	0	76	50	0	0	50	1.00
56849446--56849493	8	6.6	8	86	13	52	56	12	6	25	1.59
56849517--56849601	9	9.4	9	87	5	127	24	10	22	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56850170--56850203	12	2.8	12	86	0	50	38	35	26	0	1.57
56850264--56850551	43	6.7	43	79	5	210	27	30	17	24	1.97
56850260--56850487	86	2.7	86	82	2	271	26	31	17	24	1.97
56850327--56850562	86	2.7	87	83	4	275	29	30	16	23	1.96
56850264--56850557	129	2.3	129	79	3	315	27	30	17	24	1.97
56850744--56850802	27	2.2	27	78	3	66	62	0	6	30	1.21
56855450--56855521	30	2.4	28	78	17	74	44	6	1	47	1.38
56856890--56857040	40	3.9	39	79	9	132	19	21	21	37	1.95
56856914--56857040	40	3.2	40	79	12	140	18	23	22	35	1.96
56861020--56861099	24	3.5	23	70	13	65	37	17	17	27	1.92
56861038--56861147	24	4.7	23	78	10	109	39	20	17	23	1.92
56861031--56861119	46	1.9	46	88	4	135	39	19	15	25	1.91
56861837--56861972	41	3.3	40	77	7	132	33	24	14	27	1.94
56862923--56862952	14	2.2	13	94	5	51	6	6	3	83	0.90
56864253--56864289	16	2.4	16	82	8	51	37	5	0	56	1.22
56868300--56868350	18	2.8	18	78	0	57	33	7	17	41	1.79
56868269--56868350	36	2.3	36	80	4	85	30	7	19	42	1.78
56868992--56869099	51	2.1	51	86	3	146	28	11	17	42	1.83
56868992--56869099	17	6.4	17	69	4	74	28	11	17	42	1.83
56871745--56872025	123	2.3	126	90	3	437	30	15	20	33	1.94
56873229--56873260	15	2.1	15	94	0	55	31	28	15	25	1.96
56875114--56875220	23	4.2	23	73	21	79	31	0	21	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56875113--56875304	29	6.9	29	86	9	267	29	0	25	45	1.54
56875290--56875340	21	2.4	22	75	15	52	41	3	5	49	1.45
56877478--56877533	25	2.2	25	81	15	62	60	7	0	32	1.24
56877624--56877690	31	2.2	31	94	0	116	65	0	1	32	1.02
56877724--56877773	22	2.3	22	93	6	84	36	0	34	30	1.58
56884335--56884372	20	1.9	20	94	0	67	39	0	26	34	1.57
56890077--56890116	21	1.9	21	84	0	53	30	2	15	52	1.55
56892600--56892634	4	8.8	4	100	0	70	48	0	0	51	1.00
56893530--56893655	61	2.1	61	87	3	182	26	26	26	20	1.99
56895285--56895626	170	2.0	170	99	0	675	25	19	28	26	1.98
56901782--56901809	6	4.7	6	100	0	56	67	0	0	32	0.91
56908121--56908168	19	2.6	18	86	6	60	58	8	0	33	1.28
56910198--56910242	17	2.6	17	82	0	54	46	13	11	28	1.77
56911077--56911256	24	7.7	23	80	7	175	21	14	30	33	1.93
56914786--56914832	24	1.9	24	82	4	58	6	10	2	80	0.96
56919325--56919372	19	2.6	18	86	6	60	58	8	0	33	1.28
56931140--56931188	20	2.3	21	79	13	55	67	6	2	24	1.24
56932084--56932127	22	2.0	22	90	0	70	70	2	9	18	1.24
56933661--56933695	14	2.4	15	90	4	54	71	2	0	25	1.00
56933691--56933792	30	3.4	31	83	5	122	29	22	3	44	1.71
56934179--56934250	3	24.0	3	76	16	53	72	0	27	0	0.85
56934180--56934246	7	9.3	7	75	16	57	73	0	26	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56934180--56934250	10	6.5	11	75	16	67	73	0	26	0	0.84
56934179--56934238	24	2.5	24	92	7	97	70	0	30	0	0.88
56934179--56934245	24	2.8	24	88	6	75	71	0	28	0	0.86
56934180--56934251	11	6.2	12	79	20	73	73	0	26	0	0.83
56934183--56934251	17	3.9	17	76	12	59	73	0	26	0	0.83
56934328--56934366	14	2.8	13	85	14	51	84	12	2	0	0.72
56934516--56934582	11	6.0	11	82	3	71	80	0	19	0	0.71
56934516--56934584	22	3.1	22	78	12	79	79	0	20	0	0.73
56934931--56935283	17	19.6	18	69	19	157	34	12	10	42	1.78
56934909--56934987	34	2.3	34	86	6	106	27	15	10	46	1.77
56934919--56934972	16	3.2	16	75	14	56	35	14	9	40	1.78
56934918--56935430	17	29.3	17	67	19	148	34	11	11	42	1.77
56935074--56935275	35	5.7	34	76	11	158	32	12	12	42	1.80
56935409--56935461	20	2.6	20	78	3	70	43	9	7	39	1.65
56944566--56944666	30	3.4	30	80	9	102	29	22	3	43	1.71
56945040--56945111	3	24.0	3	78	16	62	69	0	30	0	0.89
56945043--56945071	10	2.9	10	100	0	58	62	0	37	0	0.96
56945040--56945085	13	3.7	13	81	18	62	63	0	36	0	0.95
56945369--56945419	9	5.6	9	75	11	50	82	0	17	0	0.67
56945367--56945423	20	2.8	20	82	7	71	80	0	19	0	0.71
56945367--56945417	11	5.1	10	80	13	52	80	0	19	0	0.71
56945367--56945421	14	3.9	14	73	4	56	81	0	18	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56945555--56945592	16	2.3	17	86	4	51	23	0	2	73	0.95
56945744--56946263	17	29.8	18	70	14	276	32	11	11	43	1.77
56945755--56945808	16	3.2	16	75	14	56	35	14	9	40	1.78
56945801--56945975	74	2.4	74	85	5	221	36	13	9	41	1.77
56945835--56945939	36	2.9	35	75	8	93	38	14	10	37	1.80
56945879--56945985	54	1.9	55	83	7	137	35	14	11	39	1.81
56945767--56946108	35	9.6	34	72	16	187	32	13	11	42	1.79
56946159--56946263	16	6.3	16	74	17	74	32	8	13	45	1.73
56947152--56947190	20	1.9	21	94	5	71	5	17	15	61	1.51
56948570--56948608	19	2.2	19	86	9	55	35	10	20	33	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218